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Marco Salemi

university of florida

55H-index
353Paper Count
1.2WCitation Count
Published Papers 119
Publication Date
Genomic Diversity of Human Respiratory Syncytial Virus (HRSV) Type A in a Pediatric Cohort in the United States After the Onset of the COVID-19 Pandemic
err2026-07-30
err0
errOAAI
errLuciane Amorim Santos; Anastasia Castillo; Emanuele Gustani-Buss; Matt D. T. Hitchings; Peiyu Liu; Nicole Iovine; Melanie N. Cash; Jose L. Estrada; Laise de Moraes; Philippe Lemey; John Lednicky; John Glenn Morris, Jr.; Kathleen Ryan; Marco Salemi
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Consistency in causal reasoning for large language models in scenarios of HIV antiretroviral treatment, drug interactions, and side effects
err2026-05-27
err0
errOAAI
errMattia Prosperi; Simone Rancati; Yi Guo; Jingchuan Guo; Rotana M. Radwan; Marco Salemi; Jiang Bian; Balu Bhasuran; Eric F. Egelund; Jennifer Janelle; Preeti Manavalan; Nicole Maranchick; Simone Marini; Zhe He
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Exploring cooperation among social pathogens: a computational perspective
err2026-01-01
err0
PREAI
errRamirez-Mata, Andrea S.; Browne, Cameron; Doster, Ryan S.; Salemi, Marco; Magalis, Brittany Rife
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CholeraSeq: a comprehensive genomic pipeline for cholera surveillance and near real-time outbreak investigation
err2026-01-01
err0
PREAI
errTagliamonte, Massimiliano S.; Sharma, Abhinav; Riva, Alberto; Moir, Monika; Salemi, Marco; Baxter, Cheryl; de Oliveira, Tulio; Mavian, Carla N.; Wilkinson, Eduan
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Virome and Microbiome of Florida Bats Illuminate Viral Co-Infections, Dietary Viral Signals, and Gut Microbiome Shifts
err2025-11-19
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errOAAI
errJulia E. Paoli; Thanaporn Thongthum; Maclean Bassett; Jakob Beardsley; Massimiliano S. Tagliamonte; Melanie N. Cash; Jason Spertus Newman; Lisa M. Smith; Benjamin D. Anderson; Marco Salemi
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SARITA: a large language model for generating the S1 subunit of the SARS-CoV-2 spike protein
err2025-07-01
err3
errOAAI
errRancati, Simone; Nicora, Giovanna; Bergomi, Laura; Buonocore, Tommaso Mario; Czyz, Daniel M.; Parimbelli, Enea; Bellazzi, Riccardo; Salemi, Marco; Prosperi, Mattia; Marini, Simone
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Dynamic Networks of Methicillin-Resistant Staphylococcus aureus in Communities Drive Hospital Transmission
err2025-04-29
err0
errOAAI
errCohen, Scott A.; Tagliamonte, Massimiliano S.; Mavian, Carla; Iovine, Nicole M.; Zhai, Yuting; Jeong, Kwangcheol C.; Prosperi, Mattia; Tyndall, J. Adrian; Salemi, Marco; Morris Jr, J. Glenn
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Dengue and Other Arbovirus Infections among Schoolchildren, Haiti, 2021
err2025-02-01
err0
PREAI
errLouis, Rigan; Moquin, Tracey L.; Mavian, Carla; Barthelemy, Assonic; Pu, Ruiyu; Anderson, Benjamin; De Rochars, V. Madsen Beau; Long, Maureen T.; Salemi, Marco; Lednicky, John A.; Morris Jr, J. Glenn
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Coronavirus Disease 2019 Lineages in a Minimally Vaccinated Island Population: Genomic Epidemiology of Severe Acute Respiratory Syndrome Coronavirus 2 in Haiti
err2024-10-28
err0
PREAI
errMavian, Carla N.; Tagliamonte, Massimiliano S.; Bassett, Maclean; Alam, Meer T.; Cash, Melanie N.; Hitchings, Matt; Louis, Rigan; Riva, Alberto; Zainabadi, Kayvan; Deschamps, Marie Marcelle; Liautaud, Bernard; Rouzier, Vanessa; Fitzgerald, Daniel W.; Pape, Jean William; Morris, J. Glenn; Salemi, Marco
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Forecasting dominance of SARS-CoV-2 lineages by anomaly detection using deep AutoEncoders
err2024-10-24
err0
errOAAI
errRancati, Simone; Nicora, Giovanna; Prosperi, Mattia; Bellazzi, Riccardo; Salemi, Marco; Marini, Simone
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Phylodynamic Insights into Global Emergence and Diversification of the Tomato Pathogen Xanthomonas hortorum pv. gardneri
err2024-10-01
err2
PREAI
errJibrin, Mustafa O.; Sharma, Anuj; Mavian, Carla N.; Timilsina, Sujan; Kaur, Amandeep; Iruegas-Bocardo, Fernanda; Potnis, Neha; Minsavage, Gerald V.; Coutinho, Teresa A.; Creswell, Tom C.; Egel, Daniel S.; Francis, David M.; Kebede, Misrak; Miller, Sally A.; Montelongo, Maria J.; Nikolaeva, Ekaterina; Pianzzola, Maria J.; Pruvost, Olivier; Quezado-Duval, Alice M.; Ruhl, Gail E.; Shutt, Vou M.; Maynard, Elizabeth; Maeso, Diego C.; Siri, Maria I.; Trueman, Cheryl L.; Salemi, Marco; Vallad, Gary E.; Roberts, Pamela D.; Jones, Jeffrey B.; Goss, Erica M.
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Oral Cannabidiol Treatment Is Associated with an Anti-Inflammatory Gene Expression Signature in Myeloid Cells of People Living with HIV
err2024-08-01
err2
PREAI
errMarini, Simone; Huber, Amanda; Cash, Melanie N.; Salemi, Marco; Cook, Robert L.; Borsa, Paul; Mavian, Carla N.
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CSF1R inhibition depletes brain macrophages and reduces brain virus burden in SIV-infected macaques
errBRAIN
IF11.7
err2024-07-25
err0
errOAAI
errBohannon, Diana G.; Zablocki-Thomas, Laurent D.; Leung, Evan S.; Dupont, Jinbum K.; Hattler, Julian B.; Kowalewska, Jolanta; Zhao, Miaoyun; Luo, Jiangtao; Salemi, Marco; Amedee, Angela M.; Li, Qingsheng; Kuroda, Marcelo J.; Kim, Woong-Ki
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Bacterial DnaK reduces the activity of anti-cancer drugs cisplatin and 5FU
err2024-03-12
err0
errOAAI
errBenedetti, Francesca; Mongodin, Emmanuel F.; Badger, Jonathan H.; Munawwar, Arshi; Cellini, Ashley; Yuan, Weirong; Silvestri, Giovannino; Kraus, Carl N.; Marini, Simone; Rathinam, Chozha V.; Salemi, Marco; Tettelin, Herve; Gallo, Robert C.; Zella, Davide
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Seafood-Associated Outbreak of ctx-Negative Vibrio mimicus Causing Cholera-Like Illness, Florida, USA
err2023-10-01
err2
errOAAI
errAlam, Meer T.; Stern, Sarah R.; Frison, Devin; Taylor, Katie; Tagliamonte, Massimiliano S.; Nazmus, S. Sakib; Paisie, Taylor; Hilliard, Nicole B.; Jones, Riley G.; Iovine, Nicole M.; Cherabuddi, Kartik; Mavian, Carla; Myers, Paul; Salemi, Marco; Ali, Afsar; Morris, J. Glenn
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Ancestral Origin and Dissemination Dynamics of Reemerging Toxigenic Vibrio cholerae, Haiti
err2023-10-01
err4
errOAAI
errMavian, Carla N.; Tagliamonte, Massimiliano S.; Alam, Meer T.; Sakib, S. Nazmus; Cash, Melanie N.; Moir, Monika; Jimenez, Juan Perez; Riva, Alberto; Nelson, Eric J.; Cato, Emilie T.; Ajayakumar, Jayakrishnan; Louis, Rigan; Curtis, Andrew; De Rochars, V. Madsen Beau; Rouzier, Vanessa; Pape, Jean William; De Oliveira, Tulio; Morris, J. Glenn, Jr.; Salemi, Marco; Ali, Afsar
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Network typologies predict future molecular linkages in the network of HIV transmission
errAIDS
IF3.1
err2023-06-07
err5
errOAAI
errRich, Shannan N. N.; Cook, Robert L. L.; Mavian, Carla N. N.; Garrett, Karen; Spencer, Emma C. C.; Salemi, Marco; Prosperi, Mattia
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Machine Learning Prediction and Phyloanatomic Modeling of Viral Neuroadaptive Signatures in the Macaque Model of HIV-Mediated Neuropathology
err2023-04-13
err0
errOAAI
errRamirez-Mata, Andrea S.; Ostrov, David; Salemi, Marco; Marini, Simone; Magalis, Brittany Rife
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Molecular Basis of the Toxigenic Vibrio cholerae O1 Serotype Switch from Ogawa to Inaba in Haiti
err2023-02-14
err3
errOAAI
errPaisie, Taylor K.; Cash, Melanie N.; Tagliamonte, Massimiliano S.; Ali, Afsar; Morris, J. Glenn; Salemi, Marco; Mavian, Carla
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Molecular Epidemiology of HIV-1 Subtype B Infection across Florida Reveals Few Large Superclusters with Metropolitan Origin
err2022-12-21
err7
errOAAI
errRich, Shannan N.; Prosperi, Mattia C. F.; Dellicour, Simon; Vrancken, Bram; Cook, Robert L.; Spencer, Emma C.; Salemi, Marco; Mavian, Carla
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