Not logged in Cytoscape Web: bringing network biology to the browser Ono, Keiichiro; Fong, Dylan; Gao, Chengzhan; Churas, Christopher; Pillich, Rudolf; Lenkiewicz, Joanna; Pratt, Dexter; Pico, Alexander R.; Hanspers, Kristina; Xin, Yihang; Morris, John; Kucera, Mike; Franz, Max; Lopes, Christian; Bader, Gary; Ideker, Trey Share Save
A multi-scale map of protein assemblies in the DNA damage response Kratz, Anton; Kim, Minkyu; Kelly, Marcus R.; Zheng, Fan; Koczor, Christopher A.; Li, Jianfeng; Ono, Keiichiro; Qin, Yue; Churas, Christopher; Chen, Jing; Pillich, Rudolf T.; Park, Jisoo; Modak, Maya; Collier, Rachel; Licon, Kate; Pratt, Dexter; Sobol, Robert W.; Krogan, Nevan J.; Ideker, Trey Share Save
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DDOT: A Swiss Army Knife for Investigating Data-Driven Biological Ontologies Yu, Michael Ku; Ma, Jianzhu; Ono, Keiichiro; Zheng, Fan; Fong, Samson H.; Gary, Aaron; Chen, Jing; Demchak, Barry; Pratt, Dexter; Ideker, Trey Share Save
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Active Interaction Mapping Reveals the Hierarchical Organization of Autophagy Kramer, Michael H.; Farre, Jean-Claude; Mitra, Koyel; Yu, Michael Ku; Ono, Keiichiro; Demchak, Barry; Licon, Katherine; Flagg, Mitchell; Balakrishnan, Rama; Cherry, J. Michael; Subramani, Suresh; Ideker, Trey Share Save
Systems biology analysis reveals role of MDM2 in diabetic nephropathy Saito, Rintaro; Rocanin-Arjo, Anais; You, Young-Hyun; Darshi, Manjula; Van Espen, Benjamin; Miyamoto, Satoshi; Pham, Jessica; Pu, Minya; Romoli, Simone; Natarajan, Loki; Ju, Wenjun; Kretzler, Matthias; Nelson, Robert; Ono, Keiichiro; Thomasova, Dana; Mulay, Shrikant R.; Ideker, Trey; D'Agati, Vivette; Beyret, Ergin; Belmonte, Juan Carlos Izpisua; Anders, Hans Joachim; Sharma, Kumar Share Save
NDEx, the Network Data Exchange Pratt, Dexter; Chen, Jing; Welker, David; Rivas, Ricardo; Pillich, Rudolf; Rynkov, Vladimir; Ono, Keiichiro; Miello, Carol; Hicks, Lyndon; Szalma, Sandor; Stojmirovic, Aleksandar; Dobrin, Radu; Braxenthaler, Michael; Kuentzer, Jan; Demchak, Barry; Ideker, Trey Share Save
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A new reference implementation of the PSICQUIC web service del-Toro, Noemi; Dumousseau, Marine; Orchard, Sandra; Jimenez, Rafael C.; Galeota, Eugenia; Launay, Guillaume; Goll, Johannes; Breuer, Karin; Ono, Keiichiro; Salwinski, Lukasz; Hermjakob, Henning Share Save
PSICQUIC and PSISCORE: accessing and scoring molecular interactions Aranda, Bruno; Blankenburg, Hagen; Kerrien, Samuel; Brinkman, Fiona S. L.; Ceol, Arnaud; Chautard, Emilie; Dana, Jose M.; De Las Rivas, Javier; Dumousseau, Marine; Galeota, Eugenia; Gaulton, Anna; Goll, Johannes; Hancock, Robert E. W.; Isserlin, Ruth; Jimenez, Rafael C.; Kerssemakers, Jules; Khadake, Jyoti; Lynn, David J.; Michaut, Magali; O'Kelly, Gavin; Ono, Keiichiro; Orchard, Sandra; Prieto, Carlos; Razick, Sabry; Rigina, Olga; Salwinski, Lukasz; Simonovic, Milan; Velankar, Sameer; Winter, Andrew; Wu, Guanming; Bader, Gary D.; Cesareni, Gianni; Donaldson, Ian M.; Eisenberg, David; Kleywegt, Gerard J.; Overington, John; Ricard-Blum, Sylvie; Tyers, Mike; Albrecht, Mario; Hermjakob, Henning Share Save
Pyoderma Gangrenosum of the Eyelid: Report of Two Cases and Review of the Literature Saito, N.; Yanagi, T.; Akiyama, M.; Lin, H. Y.; Kasai, S.; Fujita, Y.; Yamane, N.; Inokuma, D.; Kase, S.; Ono, K.; Minakawa, H.; Shimizu, H. Share Save
Integration of biological networks and gene expression data using Cytoscape Cline, Melissa S.; Smoot, Michael; Cerami, Ethan; Kuchinsky, Allan; Landys, Nerius; Workman, Chris; Christmas, Rowan; Avila-Campilo, Iliana; Creech, Michael; Gross, Benjamin; Hanspers, Kristina; Isserlin, Ruth; Kelley, Ryan; Killcoyne, Sarah; Lotia, Samad; Maere, Steven; Morris, John; Ono, Keiichiro; Pavlovic, Vuk; Pico, Alexander R.; Vailaya, Aditya; Wang, Peng-Liang; Adler, Annette; Conklin, Bruce R.; Hood, Leroy; Kuiper, Martin; Sander, Chris; Schmulevich, Ilya; Schwikowski, Benno; Warner, Guy J.; Ideker, Trey; Bader, Gary D. Share Save
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