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Thomas J. Deerinck

University of California San Diego

71H-index
189Paper Count
2.2WCitation Count
Published Papers 52
Publication Date
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ChromEMT: visualizing and reconstructing chromatin ultrastructure and 3D organization in situ
errNATURE PROTOCOLS
IF16
err2024-11-29
err0
PREAI
errOu, Horng D.; Phan, Sebastien; Deerinck, Thomas J.; Inagaki, Akiko; Ellisman, Mark H.; O'Shea, Clodagh C.
errShare
errSave
Do Perineuronal Nets Stabilize the Engram of a Synaptic Circuit?
errCELLS
IF5.2
err2024-09-29
err0
errOAAI
errLev-Ram, Varda; Lemieux, Sakina Palida; Deerinck, Thomas J.; Bushong, Eric A.; Perez, Alex J.; Pritchard, Denise R.; Toyama, Brandon H.; Park, Sung Kyu R.; McClatchy, Daniel B.; Savas, Jeffrey N.; Whitney, Michael; Adams, Stephen R.; Ellisman, Mark H.; Yates III, John; Tsien, Roger Y.
errShare
errSave
A Cristae-Like Microcompartment in Desulfobacterota
errMBIO
IF4.7
err2022-12-20
err1
errOAAI
errMcGlynn, Shawn Erin; Perkins, Guy; Sim, Min Sub; Mackey, Mason; Deerinck, Thomas J.; Thor, Andrea; Phan, Sebastien; Ballard, Daniel; Ellisman, Mark H.; Orphan, Victoria J.
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errSave
A combined EM and proteomic analysis places HIV-1 Vpu at the crossroads of retromer and ESCRT complexes: PTPN23 is a Vpu-cofactor
errPLOS PATHOGENS
IF4.9
err2021-11-29
err1
errOAAI
errStoneham, Charlotte A.; Langer, Simon; De Jesus, Paul D.; Wozniak, Jacob M.; Lapek, John; Deerinck, Thomas; Thor, Andrea; Pache, Lars; Chanda, Sumit K.; Gonzalez, David J.; Ellisman, Mark; Guatelli, John
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errSave
Proximity proteomics in a marine diatom reveals a putative cell surface-tochloroplast iron trafficking pathway
errELIFE
IF0
err2021-02-16
err13
errOAAI
errTurnsek, Jernej; Brunson, John K.; Viedma, Maria del Pilar Martinez; Deerinck, Thomas J.; Horak, Ales; Obornik, Miroslav; Bielinski, Vincent A.; Allen, Andrew Ellis
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errSave
Synaptic Specializations of Melanopsin-Retinal Ganglion Cells in Multiple Brain Regions Revealed by Genetic Label for Light and Electron Microscopy
errCELL REPORTS
IF6.9
err2019-10-01
err22
errOAAI
errKim, Keun-Young; Rios, Luis C.; Le, Hiep; Perez, Alex J.; Phan, Sebastien; Bushong, Eric A.; Deerinck, Thomas J.; Liu, Yu Hsin; Ellisman, Maya A.; Lev-Ram, Varda; Ju, Suyeon; Panda, Sneha A.; Yoon, Sanghee; Hirayama, Masatoshi; Mure, Ludovic S.; Hatori, Megumi; Ellisman, Mark H.; Panda, Satchidananda
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errSave
Structural basis for delta cell paracrine regulation in pancreatic islets (vol 10, 3700, 2019)
errNATURE COMMUNICATIONS
IF15.7
err2019-09-11
err0
errOAAI
errArrojo e Drigo, Rafael; Jacob, Stefan; Garcia-Prieto, Concha F.; Zheng, Xiaofeng; Fukuda, Masahiro; Hoa Tran Thi Nhu; Stelmashenko, Olga; Martins Pecanha, Flavia Leticia; Rodriguez-Diaz, Rayner; Bushong, Eric; Deerinck, Thomas; Phan, Sebastien; Ali, Yusuf; Leibiger, Ingo; Chua, Minni; Boudier, Thomas; Song, Sang-Ho; Graf, Martin; Augustine, George J.; Ellisman, Mark H.; Berggren, Per-Olof
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errSave
Structural basis for delta cell paracrine regulation in pancreatic islets
errNATURE COMMUNICATIONS
IF15.7
err2019-08-16
err91
errOAAI
errArrojo e Drigo, Rafael; Jacob, Stefan; Garcia-Prieto, Concha F.; Zheng, Xiaofeng; Fukuda, Masahiro; Hoa Tran Thi Nhu; Stelmashenko, Olga; Martins Pecanha, Flavia Leticia; Rodriguez-Diaz, Rayner; Bushong, Eric; Deerinck, Thomas; Phan, Sebastien; Ali, Yusuf; Leibiger, Ingo; Chua, Minni; Boudier, Thomas; Song, Sang-Ho; Graf, Martin; Augustine, George J.; Ellisman, Mark H.; Berggren, Per-Olof
errShare
errSave
Age Mosaicism across Multiple Scales in Adult Tissues
errCELL METABOLISM
IF30.9
err2019-08-01
err95
errOAAI
errDrigo, Rafael Arrojo E.; Lev-Ram, Varda; Tyagi, Swati; Ramachandra, Ranjan; Deerinck, Thomas; Bushong, Eric; Phan, Sebastien; Orphan, Victoria; Lechene, Claude; Ellisman, Mark H.; Hetzer, Martin W.
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errSave
Direct Transfer of a Mycoplasma mycoides Genome to Yeast Is Enhanced by Removal of the Mycoides Glycerol Uptake Factor Gene gIpF
errACS SYNTHETIC BIOLOGY
IF3.9
err2019-01-15
err9
errOAAI
errKaras, Bogumil J.; Moreau, Nicolette G.; Deerinck, Thomas J.; Gibson, Daniel G.; Venter, J. Craig; Smith, Hamilton O.; Glass, John, I
errShare
errSave
Visualization of long-lived proteins reveals age mosaicism within nuclei of postmitotic cells
errJOURNAL OF CELL BIOLOGY
IF6.4
err2018-12-14
err78
errOAAI
errToyama, Brandon H.; Arrojo e Drigo, Rafael; Lev-Ram, Varda; Ramachandra, Ranjan; Deerinck, Thomas J.; Lechene, Claude; Ellisman, Mark H.; Hetzer, Martin W.
errShare
errSave
CDeep3M-Plug-and-Play cloud-based deep learning for image segmentation
errNATURE METHODS
IF32.1
err2018-08-31
err134
errOAAI
errHaberl, Matthias G.; Churas, Christopher; Tindall, Lucas; Boassa, Daniela; Phan, Sebastien; Bushong, Eric A.; Madany, Matthew; Akay, Raffi; Deerinck, Thomas J.; Peltier, Steven T.; Ellisman, Mark H.
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errSave
Subgroup Characteristics of Marine Methane-Oxidizing ANME-2 Archaea and Their Syntrophic Partners as Revealed by Integrated Multimodal Analytical Microscopy
errAPPLIED AND ENVIRONMENTAL MICROBIOLOGY
IF3.7
err2018-06-01
err29
errOAAI
errMcGlynn, Shawn E.; Chadwick, Grayson L.; O'Neill, Ariel; Mackey, Mason; Thor, Andrea; Deerinck, Thomas J.; Ellisman, Mark H.; Orphan, Victoria J.
errShare
errSave
Iron-specific Signal Separation from within Heavy Metal Stained Biological Samples Using X-Ray Microtomography with Polychromatic Source and Energy-Integrating Detectors
errSCIENTIFIC REPORTS
IF3.9
err2018-05-15
err2
errOAAI
errKatchalski, Tsvi; Case, Tom; Kim, Keun-young; Ramachandra, Ranjan; Bushong, Eric A.; Deerinck, Thomas J.; Haberl, Matthias G.; Mackey, Mason R.; Peltier, Steven; Castillon, Guillaume A.; Fujikawa, Nobuko; Lawrence, Albert R.; Ellisman, Mark H.
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errSave
Spines of the porcupine fish: Structure, composition, and mechanical properties
errJOURNAL OF THE MECHANICAL BEHAVIOR OF BIOMEDICAL MATERIALS
IF3.5
err2017-09-01
err21
errOAAI
errSu, Frances Y.; Bushong, Eric A.; Deerinck, Thomas J.; Seo, Kyungah; Herrera, Steven; Graeve, Olivia A.; Kisailus, David; Lubarda, Vlado A.; McKittrick, Joanna
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errSave
Electron microscopy using the genetically encoded APEX2 tag in cultured mammalian cells
errNATURE PROTOCOLS
IF16
err2017-08-10
err140
errOAAI
errMartell, Jeffrey D.; Deerinck, Thomas J.; Lam, Stephanie S.; Ellisman, Mark H.; Ting, Alice Y.
errShare
errSave
Activity-dependent trafficking of lysosomes in dendrites and dendritic spines
errJOURNAL OF CELL BIOLOGY
IF6.4
err2017-06-19
err137
errOAAI
errGoo, Marisa S.; Sancho, Laura; Slepak, Natalia; Boassa, Daniela; Deerinck, Thomas J.; Ellisman, Mark H.; Bloodgood, Brenda L.; Patrick, Gentry N.
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errSave
Proximity Biotinylation as a Method for Mapping Proteins Associated with mtDNA in Living Cells
errCELL CHEMICAL BIOLOGY
IF7.2
err2017-03-01
err105
errOAAI
errHan, Shuo; Udeshi, Namrata D.; Deerinck, Thomas J.; Svinkina, Tanya; Ellisman, Mark H.; Carr, Steven A.; Ting, Alice Y.
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errSave
Visualizing viral protein structures in cells using genetic probes for correlated light and electron microscopy (vol 90, pg 39, 2015)
errMETHODS
IF4.3
err2016-07-01
err0
PREAI
errOu, Horng D.; Deerinck, Thomas J.; Bushong, Eric; Ellisman, Mark H.; O'Shea, Clodagh C.
errShare
errSave
A split horseradish peroxidase for the detection of intercellular protein-protein interactions and sensitive visualization of synapses
errNATURE BIOTECHNOLOGY
IF41.7
err2016-05-30
err157
errOAAI
errMartell, Jeffrey D.; Yamagata, Masahito; Deerinck, Thomas J.; Phan, Sebastien; Kwa, Carolyn G.; Ellisman, Mark H.; Sanes, Joshua R.; Ting, Alice Y.
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errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
M
Michael Karin
H-index: 254 · Papers: 902
F
Fred H. Gage
H-index: 219 · Papers: 1.1K
J
John R. Yates
H-index: 188 · Papers: 1.5K
H
Hans Lassmann
H-index: 165 · Papers: 896
R
Roger Y. Tsien
H-index: 164 · Papers: 582
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