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The UCSC Genome Browser database: 2026 update Casper, Jonathan; Speir, Matthew L.; Raney, Brian J.; Perez, Gerardo; Nassar, Luis R.; Lee, Christopher M.; Hinrichs, Angie S.; Gonzalez, Jairo Navarro; Fischer, Clay; Diekhans, Mark; Clawson, Hiram; Benet-Pages, Anna; Barber, Galt P.; Vaske, Charles J.; Van baren, Marijke J.; Wang, Karen; Rodriguez, Yesenia Joanna Puga; Jenkins-Kiefer, Jaidan Ashlyn; Chalamala, Megna; Haussler, David; Kent, William James; Haeussler, Maximilian Share Save
Integrated analysis of molecular atlases unveils modules driving developmental cell subtype specification in the human cortex Nano, Patricia R.; Fazzari, Elisa; Azizad, Daria; Martija, Antoni; Nguyen, Claudia V.; Wang, Sean; Giang, Vanna; Kan, Ryan L.; Yoo, Juyoun; Wick, Brittney; Haeussler, Maximilian; Bhaduri, Aparna Share Save
The UCSC Genome Browser database: 2025 update Perez, Gerardo; Barber, Galt P.; Benet-Pages, Anna; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Fischer, Clay; Gonzalez, Jairo Navarro; Hinrichs, Angie S.; Lee, Christopher M.; Nassar, Luis R.; Raney, Brian J.; Speir, Matthew L.; van Baren, Marijke J.; Vaske, Charles J.; Haussler, David; Kent, W. James; Haeussler, Maximilian Share Save
Cell type mapping of inflammatory muscle diseases highlights selective myofiber vulnerability in inclusion body myositis Wischnewski, Sven; Thaewel, Thomas; Ikenaga, Chiseko; Kocharyan, Anna; Lerma-Martin, Celia; Zulji, Amel; Rausch, Hans-Werner; Brenner, David; Thomas, Leonie; Kutza, Michael; Wick, Brittney; Trobisch, Tim; Preusse, Corinna; Haeussler, Maximilian; Leipe, Jan; Ludolph, Albert; Rosenbohm, Angela; Hoke, Ahmet; Platten, Michael; Weishaupt, Jochen H.; Sommer, Clemens J.; Stenzel, Werner; Lloyd, Thomas E.; Schirmer, Lucas Share Save
The UCSC Genome Browser database: 2024 update Raney, Brian J.; Barber, Galt P.; Benet-Pages, Anna; Casper, Jonathan; Clawson, Hiram; Cline, Melissa S.; Diekhans, Mark; Fischer, Clayton; Gonzalez, Jairo Navarro; Hickey, Glenn; Hinrichs, Angie S.; Kuhn, Robert M.; Lee, Brian T.; Lee, Christopher M.; Le Mercier, Phillipe; Miga, KarenH; Nassar, Luis R.; Nejad, Parisa; Paten, Benedict; Perez, Gerardo; Schmelter, Daniel; Speir, Matthew L.; Wick, Brittney D.; Zweig, Ann S.; Haussler, David; Kent, W. James; Haeussler, Maximilian Share Save
GenArk: towards a million UCSC genome browsers Clawson, Hiram; Lee, Brian T.; Raney, Brian J.; Barber, Galt P.; Casper, Jonathan; Diekhans, Mark; Fischer, Clay; Gonzalez, Jairo Navarro; Hinrichs, Angie S.; Lee, Christopher M.; Nassar, Luis R.; Perez, Gerardo; Wick, Brittney; Schmelter, Daniel; Speir, Matthew L.; Armstrong, Joel; Zweig, Ann S.; Kuhn, Robert M.; Kirilenko, Bogdan M.; Hiller, Michael; Haussler, David; Kent, W. James; Haeussler, Maximilian Share Save
The UCSC Genome Browser database: 2023 update Nassar, Luis R.; Barber, Galt P.; Benet-Pages, Anna; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Fischer, Clay; Gonzalez, Jairo Navarro; Hinrichs, Angie S.; Lee, Brian T.; Lee, Christopher M.; Muthuraman, Pranav; Nguy, Beagan; Pereira, Tiana; Nejad, Parisa; Perez, Gerardo; Raney, Brian J.; Schmelter, Daniel; Speir, Matthew L.; Wick, Brittney D.; Zweig, Ann S.; Haussler, David; Kuhn, Robert M.; Haeussler, Maximilian; Kent, W. James Share Save
The dynseq browser track shows context-specific features at nucleotide resolution Nair, Surag; Barrett, Arjun; Li, Daofeng; Raney, Brian J.; Lee, Brian T.; Kerpedjiev, Peter; Ramalingam, Vivekanandan; Pampari, Anusri; Lekschas, Fritz; Wang, Ting; Haeussler, Maximilian; Kundaje, Anshul Share Save
Cross-regional homeostatic and reactive glial signatures in multiple sclerosis Trobisch, Tim; Zulji, Amel; Stevens, Nikolas A.; Schwarz, Sophia; Wischnewski, Sven; Ozturk, Mikail; Perales-Paton, Javier; Haeussler, Maximilian; Saez-Rodriguez, Julio; Velmeshev, Dmitry; Schirmer, Lucas Share Save
Human microglia states are conserved across experimental models and regulate neural stem cell responses in chimeric organoids Popova, Galina; Soliman, Sarah S.; Kim, Chang N.; Keefe, Matthew G.; Hennick, Kelsey M.; Jain, Samhita; Li, Tao; Tejera, Dario; Shin, David; Chhun, Bryant B.; McGinnis, Christopher S.; Speir, Matthew; Gartner, Zev J.; Mehta, Shalin B.; Haeussler, Maximilian; Hengen, Keith B.; Ransohoff, Richard R.; Piao, Xianhua; Nowakowski, Tomasz J. Share Save
The UCSC Genome Browser database: 2022 update Lee, Brian T.; Barber, Galt P.; Benet-Pages, Anna; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Fischer, Clay; Gonzalez, Jairo Navarro; Hinrichs, Angie S.; Lee, Christopher M.; Muthuraman, Pranav; Nassar, Luis R.; Nguy, Beagan; Pereira, Tiana; Perez, Gerardo; Raney, Brian J.; Rosenbloom, Kate R.; Schmelter, Daniel; Speir, Matthew L.; Wick, Brittney D.; Zweig, Ann S.; Haussler, David; Kuhn, Robert M.; Haeussler, Maximilian; Kent, W. James Share Save
User-friendly, scalable tools and workflows for single-cell RNA-seq analysis Moreno, Pablo; Huang, Ni; Manning, Jonathan R.; Mohammed, Suhaib; Solovyev, Andrey; Polanski, Krzysztof; Bacon, Wendi; Chazarra, Ruben; Talavera-Lopez, Carlos; Doyle, Maria A.; Marnier, Guilhem; Gruening, Bjoern; Rasche, Helena; George, Nancy; Fexova, Silvie Korena; Alibi, Mohamed; Miao, Zhichao; Perez-Riverol, Yasset; Haeussler, Maximilian; Brazma, Alvis; Teichmann, Sarah; Meyer, Kerstin B.; Papatheodorou, Irene Share Save
Modeling Human TBX5 Haploinsufficiency Predicts Regulatory Networks for Congenital Heart Disease Kathiriya, Irfan S.; Rao, Kavitha S.; Iacono, Giovanni; Devine, W. Patrick; Blair, Andrew P.; Hota, Swetansu K.; Lai, Michael H.; Garay, Bayardo, I; Thomas, Reuben; Gong, Henry Z.; Wasson, Lauren K.; Goyal, Piyush; Sukonnik, Tatyana; Hu, Kevin M.; Akgun, Gunes A.; Bernard, Laure D.; Akerberg, Brynn N.; Gu, Fei; Li, Kai; Speir, Matthew L.; Haeussler, Maximilian; Pu, William T.; Stuart, Joshua M.; Seidman, Christine E.; Seidman, J. G.; Heyn, Holger; Bruneau, Benoit G. Share Save
The UCSC Genome Browser database: 2021 update Gonzalez, Jairo Navarro; Zweig, Ann S.; Speir, Matthew L.; Schmelter, Daniel; Rosenbloom, Kate R.; Raney, Brian J.; Powell, Conner C.; Nassar, Luis R.; Maulding, Nathan D.; Lee, Christopher M.; Lee, Brian T.; Hinrichs, Angie S.; Fyfe, Alastair C.; Fernandes, Jason D.; Diekhans, Mark; Clawson, Hiram; Casper, Jonathan; Benet-Pages, Anna; Barber, Galt P.; Haussler, David; Kuhn, Robert M.; Haeussler, Maximilian; Kent, W. James Share Save
The UCSC SARS-CoV-2 Genome Browser Fernandes, Jason D.; Hinrichs, Angie S.; Clawson, Hiram; Gonzalez, Jairo Navarro; Lee, Brian T.; Nassar, Luis R.; Raney, Brian J.; Rosenbloom, Kate R.; Nerli, Santrupti; Rao, Arjun A.; Schmelter, Daniel; Fyfe, Alastair; Maulding, Nathan; Zweig, Ann S.; Lowe, Todd M.; Ares, Manuel Jr Jr; Corbet-Detig, Russ; Kent, W. James; Haussler, David; Haeussler, Maximilian Share Save
AMELIE speeds Mendelian diagnosis by matching patient phenotype and genotype to primary literature Birgmeier, Johannes; Haeussler, Maximilian; Deisseroth, Cole; Steinberg, Ethan H.; Jagadeesh, Karthik A.; Ratner, Alexander J.; Guturu, Harendra; Wenger, Aaron M.; Diekhans, Mark E.; Stenson, Peter D.; Cooper, David N.; Re, Christopher; Beggs, Alan H.; Bernstein, Jonathan; Bejerano, Gill Share Save
AVADA: toward automated pathogenic variant evidence retrieval directly from the full-text literature Birgmeier, Johannes; Deisseroth, Cole A.; Hayward, Laura E.; Galhardo, Luisa M. T.; Tierno, Andrew P.; Jagadeesh, Karthik A.; Stenson, Peter D.; Cooper, David N.; Bernstein, Jonathan A.; Haeussler, Maximilian; Bejerano, Gill Share Save
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