Not logged in Real-world effectiveness of perinatal RSV immunoprophylaxis: protocol for a test-negative case-control study Aparicio Llorente, Camila; Wats, Aanchal; Araujo, Barbara L.; Moniz Ganem, Julia; Oliva, Isabela O.; Xu, Hanmeng; Brodsky, Nina N.; Lucas, Carrie L.; Aronson, Paul L.; Grubaugh, Nathan D.; Breban, Mallery; Redmond, Seth; Shapiro, Eugene D.; Niccolai, Linda M.; Weinberger, Daniel M.; Oliveira, Carlos R. Share Save
Quantifying the spatiotemporal dynamics of the first two epidemic waves of SARS-CoV-2 infections in the United States Lopes, Rafael; Lan, Yu; Chitwood, Melanie H.; Klaassen, Fayette; Salomon, Joshua A.; Menzies, Nicolas A.; Warren, Joshua L.; Grubaugh, Nathan D.; Cohen, Ted; Swartwood, Nicole A. Share Save
Unexpected diversification of DENV2 genotype III in Colombia: New Insights and application of the globalized nomenclature Calvo, Eliana P.; Madronero, Leidy Johana; Hernandez, Lenny Marcela; Arturo, Jhann Andres; Pinzon, Hernando; Delgado, Felix Giovanni; Velandia-Romero, Myriam Lucia; Hill, Verity; Grubaugh, Nathan D.; Castellanos, Jaime Eduardo Share Save
A tiled amplicon protocol for culture-free whole-genome sequencing of M. tuberculosis from clinical specimens Kalinich, Chaney C.; Gonzalez, Freddy L.; Osmaston, Alice; Breban, Mallery I.; Distefano, Isabel; Leon, Candy; Coronel, Jorge; Tan, Grace; Crudu, Valeriu; Ciobanu, Nelly; Codreanu, Alexandru; Solano, Walter; Raez, Jimena; Sheen, Patricia; Zimic, Mirko; Allicock, Orchid M.; Chaguza, Chrispin; Wyllie, Anne L.; Brandt, Matthew; Weinberger, Daniel M.; Sobkowiak, Benjamin; Cohen, Ted; Grandjean, Louis; Grubaugh, Nathan D.; Redmond, Seth N. Share Save
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Epidemiology and severity risk factors of dengue virus infection during the 2023-2024 outbreak in Colombia Torres-Hernandez, Daniela; Grubaugh, Nathan D.; Murillo-Ortiz, Monica A.; Hurtado, Isabel C.; Hill, Verity; Breban, Mallery I.; Gomez-Zambrano, Mara; Lopez, Pio; Cantor, Erika; Davalos, Diana M.; Lopez-Medina, Eduardo Share Save
The Impact of Orthopoxvirus Vaccination and Mpox Infection on Cross-Protective Immunity Crandell, Jameson; Monteiro, Valter Silva; Pischel, Lauren; Fang, Zhenhao; Conde, Luciana; Zhong, Yi; Lawres, Lauren; Breban, Mallery; Vogels, Chantal; Grubaugh, Nathan; Aoun-Barakat, Lydia; Grifoni, Alba; Sette, Alessandro; Chen, Sidi; Yildirim, Inci; Vale, Andre; Omer, Saad; Lucas, Carolina Share Save
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Unravelling dengue serotype 3 transmission in Brazil: evidence for multiple introductions of the 3III_B.3.2 lineage Pereira, James Siqueira; Slavov, Svetoslav Nanev; Brcko, Isabela Carvalho; Ribeiro, Gabriela; de Souza, Vinicius Carius; Ribeiro, Igor Santana; De Lima, Iago Trezena T.; Borges, Gleissy Adriane Lima; Furtado, Katia Cristina de Lima; Chagas, Shirley Moreira da Silva; da Costa, Patricia Miriam Sayuri Sato Barros; Adelino, Talita emile Ribeiro; Iani, Felipe C. de Melo; Alcantara, Luiz Carlos Junior; Hill, Verity; Grubaugh, Nathan D.; Sampaio, Sandra Coccuzzo; Elias, Maria Carolina; Giovanetti, Marta; Lima, Alex Ranieri J. Share Save
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Dengue Outbreak Caused by Multiple Virus Serotypes and Lineages, Colombia, 2023-2024 Grubaugh, Nathan D.; Torres-Hernandez, Daniela; Murillo-Ortiz, Monica A.; Davalos, Diana M.; Lopez, Pio; Hurtado, Isabel C.; Breban, Mallery I.; Bourgikos, Ellie; Hill, Verity; Lopez-Medina, Eduardo Share Save
Analysis of Powassan Virus Genome Sequences from Human Cases Reveals Substantial Genetic Diversity with Implications for Molecular Assay Development Klontz, Erik H.; Chowdhury, Navid; Holbrook, Nolan; Solomon, Isaac H.; Telford, Sam R.; Aliota, Matthew T.; Vogels, Chantal B. F.; Grubaugh, Nathan D.; Helgager, Jeffrey; Hughes, Holly R.; Velez, Jason; Piantadosi, Anne; Chiu, Charles Y.; Lemieux, Jacob; Branda, John A. Share Save
North-south pathways, emerging variants, and high climate suitability characterize the recent spread of dengue virus serotypes 2 and 3 in the Dominican Republic Miguel, Isaac; Feliz, Edwin P.; Agramonte, Robinson; Martinez, Pedro V.; Vergara, Carlos; Imbert, Yvonne; De la Cruz, Lucia; de Castro, Nurys; Cedano, Odalis; De la Paz, Yamilka; Fonseca, Vagner; Santiago, Gilberto A.; Munoz-Jordan, Jorge L.; Peguero, Armando; Paulino-Ramirez, Robert; Grubaugh, Nathan D.; de Filippis, Ana Maria Bispo; Alcantara, Luiz Carlos Junior; Rico, Jairo Mendez; Lourenco, Jose; Franco, Leticia; Giovanetti, Marta Share Save
Combining genomic data and infection estimates to characterize the complex dynamics of SARS-CoV-2 Omicron variants in the US Lopes, Rafael; Pham, Kien; Klaassen, Fayette; Chitwood, Melanie H.; Hahn, Anne M.; Redmond, Seth; Swartwood, Nicole A.; Salomon, Joshua A.; Menzies, Nicolas A.; Cohen, Ted; Grubaugh, Nathan D. Share Save
Persistent SARS-CoV-2 infection: significance and implications Machkovech, Heather M.; Hahn, Anne M.; Wang, Jacqueline Garonzik; Grubaugh, Nathan D.; Halfmann, Peter J.; Johnson, Marc C.; Lemieux, Jacob E.; O'Connor, David H.; Piantadosi, Anne; Wei, Wanting; Friedrich, Thomas C. Share Save
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DengueSeq: a pan-serotype whole genome amplicon sequencing protocol for dengue virus Vogels, Chantal B. F.; Hill, Verity; Breban, Mallery I.; Chaguza, Chrispin; Paul, Lauren M.; Sodeinde, Afeez; Taylor-Salmon, Emma; Ott, Isabel M.; Petrone, Mary E.; Dijk, Dennis; Jonges, Marcel; Welkers, Matthijs R. A.; Locksmith, Timothy; Dong, Yibo; Tarigopula, Namratha; Tekin, Omer; Schmedes, Sarah; Bunch, Sylvia; Cano, Natalia; Jaber, Rayah; Panzera, Charles; Stryker, Ian; Vergara, Julieta; Zimler, Rebecca; Kopp, Edgar; Heberlein, Lea; Herzog, Kaylee S.; Fauver, Joseph R.; Morrison, Andrea M.; Michael, Scott F.; Grubaugh, Nathan D. Share Save
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