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Yang Zhang

carnegie mellon university

29H-index
101Paper Count
3.1KCitation Count
Published Papers 37
Publication Date
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Single-cell multiomics connects 3D genome and transcriptome alterations in Alzheimer’s disease
errScience
IF45.8
err2026-07-23
err0
PREAI
errYang Zhang; Xinyue Lu; Alexander K. Kunisky; Shahul Alam; Junjie Tang; Ruochi Zhang; Shike Wang; Han Zhang; Jude Baroudi; Walid Ichcho; Deyong Jia; Sahar Ghorbanikalateh; Sahel Ghorbanikalateh; Shihan Wang; David A. Bennett; Hansruedi Mathys; Zhijun Duan; Jian Ma
errShare
errSave
An integrated view of the structure and function of the human 4D nucleome
errNature
IF48.5
err2025-12-17
err0
errOAAI
errJob Dekker; Betul Akgol Oksuz; Yang Zhang; Ye Wang; Miriam K. Minsk; Shuzhen Kuang; Liyan Yang; Johan H. Gibcus; Nils Krietenstein; Oliver J. Rando; Jie Xu; Derek H. Janssens; Steven Henikoff; Alexander Kukalev; Willemin Andréa; Warren Winick-Ng; Rieke Kempfer; Ana Pombo; Miao Yu; Pradeep Kumar; Liguo Zhang; Andrew S. Belmont; Takayo Sasaki; Tom van Schaik; Laura Brueckner; Daan Peric-Hupkes; Bas van Steensel; Ping Wang; Haoxi Chai; Minji Kim; Yijun Ruan; Ran Zhang; Sofia A. Quinodoz; Prashant Bhat; Mitchell Guttman; Wenxin Zhao; Shu Chien; Yuan Liu; Sergey V. Venev; Dariusz Plewczynski; Ibai Irastorza Azcarate; Dominik Szabó; Christoph J. Thieme; Teresa Szczepińska; Mateusz Chiliński; Kaustav Sengupta; Mattia Conte; Andrea Esposito; Alex Abraham; Ruochi Zhang; Yuchuan Wang; Xingzhao Wen; Qiuyang Wu; Yang Yang; Jie Liu; Lorenzo Boninsegna; Asli Yildirim; Yuxiang Zhan; Andrea Maria Chiariello; Simona Bianco; Lindsay Lee; Ming Hu; Yun Li; R. Jordan Barnett; Ashley L. Cook; Daniel J. Emerson; Claire Marchal; Peiyao Zhao; Peter J. Park; Burak H. Alver; Andrew J. Schroeder; Rahi Navelkar; Clara Bakker; William Ronchetti; Shannon Ehmsen; Alexander D. Veit; Nils Gehlenborg; Ting Wang; Daofeng Li; Xiaotao Wang; Mario Nicodemi; Bing Ren; Sheng Zhong; Jennifer E. Phillips-Cremins; David M. Gilbert; Katherine S. Pollard; Frank Alber; Jian Ma; William S. Noble; Feng Yue
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errSave
DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks
errNature Communications
IF15.7
err2025-11-18
err0
errOAAI
errWenduo Cheng; Zhenqiao Song; Yang Zhang; Shike Wang; Danqing Wang; Muyu Yang; Lei Li; Jian Ma
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errSave
Nucleolus and centromere Tyramide Signal Amplification-Seq reveals variable localization of heterochromatin in different cell types
errCOMMUNICATIONS BIOLOGY
IF5.1
err2024-09-13
err0
errOAAI
errKumar, Pradeep; Gholamalamdari, Omid; Zhang, Yang; Zhang, Liguo; Vertii, Anastassiia; van Schaik, Tom; Peric-Hupkes, Daan; Sasaki, Takayo; Gilbert, David M.; van Steensel, Bas; Ma, Jian; Kaufman, Paul D.; Belmont, Andrew S.
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errSave
Haematococcus lacustris Carotenogensis: A Historical Event of Primary to Secondary Adaptations to Earth's Oxygenation
errLIFE-BASEL
IF3.4
err2024-04-30
err0
errOAAI
errQu, Cui Lan; Jin, Hui; Zhang, Bing; Chen, Wei Jian; Zhang, Yang; Xu, Yuan Yuan; Wang, Rui; Lao, Yong Min
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errSave
Computational methods for analysing multiscale 3D genome organization
errNATURE REVIEWS GENETICS
IF52
err2023-09-06
err13
errOAAI
errZhang, Yang; Boninsegna, Lorenzo; Yang, Muyu; Misteli, Tom; Alber, Frank; Ma, Jian
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errSave
Developmentally programmed early-age skin localization of iNKT cells supports local tissue development and homeostasis
errNATURE IMMUNOLOGY
IF27.6
err2023-01-09
err5
PREAI
errWang, Wei-Bei; Lin, Yang-Ding; Zhao, Luming; Liao, Chang; Zhang, Yang; Davila, Micha; Sun, Jasmine; Chen, Yidong; Xiong, Na
errShare
errSave
Integration of transcriptomic and metabolomic data reveals new tetraploid kiwifruit hybrids with enhanced nutrients
errLWT-FOOD SCIENCE AND TECHNOLOGY
IF6.6
err2022-12-01
err3
errOAAI
errZhang, Jing; Du, Kui; Xie, Yue; Zhang, Xin; Jiang, Wenqian; Li, Mingzhang; Shu, Peng; Wang, Jiayu; Zhuang, Qiguo; Wang, Hsihua; Liu, Mingchun; Zhang, Yang; Zhang, Zixin
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errSave
Nucleome Browser: an integrative and multimodal data navigation platform for 4D Nucleome
errNATURE METHODS
IF32.1
err2022-07-21
err13
errOAAI
errZhu, Xiaopeng; Zhang, Yang; Wang, Yuchuan; Tian, Dechao; Belmont, Andrew S.; Swedlow, Jason R.; Ma, Jian
errShare
errSave
Feeding activates FGF15-SHP-TFEB-mediated lipophagy in the gut
errEMBO JOURNAL
IF8.3
err2022-06-10
err9
errOAAI
errSeok, Sunmi; Kim, Young-Chae; Zhang, Yang; Kong, Bo; Guo, Grace; Ma, Jian; Kemper, Byron; Kemper, Jongsook Kim
errShare
errSave
CubeSense: Wireless, Battery-Free Interactivity through Low-Cost Corner Reflector Mechanisms
errextended abstracts of the
IF0
err2021-05-08
err1
PREAI
errYang, Xiaoying; Zhang, Yang
errShare
errSave
SPIN reveals genome-wide landscape of nuclear compartmentalization
errGENOME BIOLOGY
IF9.4
err2021-01-14
err57
errOAAI
errWang, Yuchuan; Zhang, Yang; Zhang, Ruochi; van Schaik, Tom; Zhang, Liguo; Sasaki, Takayo; Peric-Hupkes, Daniel; Chen, Yu; Gilbert, David M.; van Steensel, Bas; Belmont, Andrew S.; Ma, Jian
errShare
errSave
TSA-seq reveals a largely conserved genome organization relative to nuclear speckles with small position changes tightly correlated with gene expression changes
errGENOME RESEARCH
IF5.5
err2020-12-18
err63
errOAAI
errZhang, Liguo; Zhang, Yang; Chen, Yu; Gholamalamdari, Omid; Wang, Yuchuan; Ma, Jian; Belmont, Andrew S.
errShare
errSave
Intestinal FGF15/19 physiologically repress hepatic lipogenesis in the late fed-state by activating SHP and DNMT3A
errNATURE COMMUNICATIONS
IF15.7
err2020-11-24
err70
errOAAI
errKim, Young-Chae; Seok, Sunmi; Zhang, Yang; Ma, Jian; Kong, Bo; Guo, Grace; Kemper, Byron; Kemper, Jongsook Kim
errShare
errSave
Antagonism between splicing and microprocessor complex dictates the serum-induced processing of lnc-MIRHG for efficient cell cycle reentry
errRNA
IF5
err2020-07-16
err14
errOAAI
errSun, Qinyu; Hao, Qinyu; Lin, Yo-Chuen; Song, You Jin; Bangru, Sushant; Arif, Waqar; Tripathi, Vidisha; Zhang, Yang; Cho, Jung-Hyun; Freier, Susan M.; Jenkins, Lisa M.; Ma, Jian; Yoon, Je-Hyun; Kalsotra, Auinash; Lal, Ashish; Prasanth, Supriya G.; Prasanth, Kannanganattu, V
errShare
errSave
MicroRNA-210 Promotes Bile Acid-Induced Cholestatic Liver Injury by Targeting Mixed-Lineage Leukemia-4 Methyltransferase in Mice
errHEPATOLOGY
IF15.8
err2020-02-14
err24
errOAAI
errKim, Young-Chae; Jung, Hyunkyung; Seok, Sunmi; Zhang, Yang; Ma, Jian; Li, Tiangang; Kemper, Byron; Kemper, Jongsook Kim
errShare
errSave
Fasting-induced FGF21 signaling activates hepatic autophagy and lipid degradation via JMJD3 histone demethylase
errNATURE COMMUNICATIONS
IF15.7
err2020-02-10
err152
errOAAI
errByun, Sangwon; Seok, Sunmi; Kim, Young-Chae; Zhang, Yang; Yau, Peter; Iwamori, Naoki; Xu, H. Eric; Ma, Jian; Kemper, Byron; Kemper, Jongsook Kim
errShare
errSave
MOCHI enables discovery of heterogeneous interactome modules in 3D nucleome
errGENOME RESEARCH
IF5.5
err2020-01-06
err8
errOAAI
errTian, Dechao; Zhang, Ruochi; Zhang, Yang; Zhu, Xiaopeng; Ma, Jian
errShare
errSave
LncRNA-mediated regulation of SOX9 expression in basal subtype breast cancer cells
errRNA
IF5
err2019-11-05
err19
errOAAI
errTariq, Aamira; Hao, Qinyu; Sun, Qinyu; Singh, Deepak K.; Jadaliha, Mahdieh; Zhang, Yang; Chetlangia, Neha; Ma, Jian; Holton, Sarah E.; Bhargava, Rohit; Lal, Ashish; Prasanth, Supriya G.; Prasanth, Kannanganattu V.
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errSave
Sozu: Self-Powered Radio Tags for Building-Scale Activity Sensing
errproceedings of the
IF0
err2019-10-17
err48
errOAAI
errZhang, Yang; Iravantchi, Yasha; Jin, Haojian; Kumar, Swarun; Harrison, Chris
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errSave

Research Directions

The data has not been retrieved yet.
Co-authors
Cooperation Journals
D
David A. Bennett
H-index: 197 · Papers: 2.3K
P
Peter J. Park
H-index: 145 · Papers: 810
S
Steven Henikoff
H-index: 141 · Papers: 680
S
Shu Chien
H-index: 133 · Papers: 871
B
Bing Ren
H-index: 131 · Papers: 544
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