Not logged in Error-corrected flow-based sequencing at whole-genome scale and its application to circulating cell-free DNA profiling Cheng, Alexandre Pellan; Widman, Adam J.; Arora, Anushri; Rusinek, Itai; Sossin, Aaron; Rajagopalan, Srinivas; Midler, Nicholas; Hooper, William F.; Murray, Rebecca M.; Halmos, Daniel; Langanay, Theophile; Chu, Hoyin; Inghirami, Giorgio; Potenski, Catherine; Germer, Soren; Marton, Melissa; Manaa, Dina; Helland, Adrienne; Furatero, Rob; Mcclintock, Jaime; Winterkorn, Lara; Steinsnyder, Zoe; Wang, Yohyoh; Alimohamed, Asrar I.; Malbari, Murtaza S.; Saxena, Ashish; Callahan, Margaret K.; Frederick, Dennie T.; Spain, Lavinia; Sigouros, Michael; Manohar, Jyothi; King, Abigail; Wilkes, David; Otilano, John; Elemento, Olivier; Mosquera, Juan Miguel; Jaimovich, Ariel; Lipson, Doron; Turajlic, Samra; Zody, Michael C.; Altorki, Nasser K.; Wolchok, Jedd D.; Postow, Michael A.; Robine, Nicolas; Faltas, Bishoy M.; Boland, Genevieve; Landau, Dan A. Share Save
Global loss of promoter-enhancer connectivity and rebalancing of gene expression during early colorectal cancer carcinogenesis Zhu, Yizhou; Lee, Hayan; White, Shannon; Weimer, Annika K.; Monte, Emma; Horning, Aaron; Nevins, Stephanie A.; Esplin, Edward D.; Paul, Kristina; Krieger, Gat; Shipony, Zohar; Chiu, Roxanne; Laquindanum, Rozelle; Karathanos, Thomas V.; Chua, Melissa W. Y.; Mills, Meredith; Ladabaum, Uri; Longacre, Teri; Shen, Jeanne; Jaimovich, Ariel; Lipson, Doron; Kundaje, Anshul; Greenleaf, William J.; Curtis, Christina; Ford, James M.; Snyder, Michael P. Share Save
Balanced-strand sequencing for highly efficient duplex variant calling in circulating tumor DNA Widman, Adam; Cheng, Alexandre P.; Sossin, Aaron; Rajagopalan, Srinivas; Al Assaad, Majd; Deochand, Sunil; Steinsnyder, Zoe; Manaa, Dina; Marton, Melissa; Reeves, Catherine; Rusinek, Itai; Meiri, Eti; Barad, Omer; Shipony, Zohar; Gilad, Shlomit; Jaimovich, Ariel; Sigouros, Michael; Manohar, Jyothi; King, Abigail; Wilkes, David; Otilano, John; Elemento, Olivier; Faltas, Bishoy M.; Mosquera, Juan M.; Landau, Dan A. Share Save
Microsatellite instability (MSI) detection using flow-based sequencing Lithwick-Yanai, Gila; Benjamin, Hila; Cano-Nistal, Jorge; Geisler, Shir; Jaimovich, Ariel; Iremadze, Nika; Kessler, Dror; Soifer, Ilya; Lebanony, Danit; Ben Simhon, Keren; Gilad, Shlomit; Meiri, Eti; Lipson, Doron; Maruvka, Yosef E. Share Save
Advancements in somatic variant calling from UG100 whole genome and whole exome sequencing data Shem-Tov, Doron; Levy, Maya; Hornung, Gil; Soifer, Ilya; Benjamin, Hila; Jaimovich, Ariel; Blattler, Adam; Brandler, William; Sugar, Robert; Kinde, Isaac; Barad, Omer; Lipson, Doron Share Save
Whole genome error-corrected sequencing for sensitive circulating tumor DNA cancer monitoring Cheng, Alexandre P.; Widman, Adam J.; Arora, Anushri; Rusinek, Itai; Hooper, William F.; Murray, Rebecca; Halmos, Daniel; Langanay, Theophile; Inghirami, Giorgio; Germer, Soren; Marton, Melissa; Helland, Adrienne; Furatero, Rob; McClintock, Jaime; Winterkorn, Lara; Steinsnyder, Zoe; Wang, Yohyoh; Rajagopalan, Srinivas; Alimohamed, Asrar I.; Malbari, Murtaza S.; Saxena, Ashish; Callahan, Margaret K.; Frederick, Dennie T.; Spain, Lavinia; Jaimovich, Ariel; Lipson, Doron; Turajlic, Samra; Zody, Michael C.; Altorki, Nasser K.; Wolchok, Jedd D.; Postow, Michael A.; Robine, Nicolas; Boland, Genevieve; Landau, Dan A. Share Save
Familial adenomatous polyposis epigenetic landscape as a precancer model of colorectal cancer Lee, Hayan; Krieger, Gat; Clark, Tyson; Zhu, Yizhou; Khan, Aziz; Hanson, Casey R.; Horning, Aaron; Esplin, Edward D.; Badu, Mohan; Paul, Kristina; Chiu, Roxanne; Bahmani, Bahareh; Nevins, Stephanie; Weimer, Annika K.; Jaimovich, Ariel; Curtis, Christina; Greenleaf, William; Ford, James M.; Lipson, Doron; Shipony, Zohar; Snyder, Michael P. Share Save
Prospective Study of Perioperative Circulating Tumor DNA Dynamics in Patients Undergoing Hepatectomy for Colorectal Liver Metastases Newhook, Timothy E.; Overman, Michael J.; Chun, Yun Shin; Dasari, Arvind; Tzeng, Ching-Wei D.; Cao, Hop S. Tran; Raymond, Victoria; Parseghian, Christine; Johnson, Benny; Nishioka, Yujiro; Kawaguchi, Yoshikuni; Uppal, Abhineet; Vreeland, Timothy J.; Jaimovich, Ariel; Arvide, Elsa M.; Cristo, Jenilette V.; Wei, Steven H.; Raghav, Kanwal P.; Morris, Van K.; Lee, Jeffrey E.; Kopetz, Scott; Vauthey, Jean-Nicolas Share Save
Minimal Residual Disease Detection using a Plasma-only Circulating Tumor DNA Assay in Patients with Colorectal Cancer Parikh, Aparna R.; Van Seventer, Emily E.; Siravegna, Giulia; Hartwig, Anna, V; Jaimovich, Ariel; He, Yupeng; Kanter, Katie; Fish, Madeleine G.; Fosbenner, Kathryn D.; Miao, Benchun; Phillips, Susannah; Carmichael, John H.; Sharma, Nihaarika; Jarnagin, Joy; Baiev, Islam; Shah, Yojan S.; Fetter, Isobel J.; Shahzade, Heather A.; Allen, Jill N.; Blaszkowsky, Lawrence S.; Clark, Jeffrey W.; Dubois, Jon S.; Franses, Joseph W.; Giantonio, Bruce J.; Goyal, Lipika; Klempner, Samuel J.; Nipp, Ryan D.; Roeland, Eric J.; Ryan, David P.; Weekes, Colin D.; Wo, Jennifer Y.; Hong, Theodore S.; Bordeianou, Liliana; Ferrone, Cristina R.; Qadan, Motaz; Kunitake, Hiroko; Berger, David; Ricciardi, Rocco; Cusack, James C.; Raymond, Victoria M.; Talasaz, AmirAli; Boland, Genevieve M.; Corcoran, Ryan B. Share Save
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Integrated genomic and epigenomic cell-free DNA (cfDNA) analysis for the detection of early-stage colorectal cancer Westesson, Oscar; Axelrod, Haley; Dean, Jason; He, Yupeng; Sample, Paul; Zotenko, Elena; McCole, Ruth; Goel, Mohit; Eid, Charbel; Kurata, Jessica; Kong, Yu; Hartwig, Anna; Snyder, Matthew; Greenleaf, Will; Raymond, Victoria M.; Chudova, Darya; Jaimovich, Ariel; Talasaz, AmirAli Share Save
Stress-mediated exit to quiescence restricted by increasing persistence in CDK4/6 activation Yang, Hee Won; Cappell, Steven D.; Jaimovich, Ariel; Liu, Chad; Chung, Mingyu; Daigh, Leighton H.; Pack, Lindsey R.; Fan, Yilin; Regot, Sergi; Covert, Markus; Meyer, Tobias Share Save
Combined genomic and epigenomic assessment of cell-free circulating tumor DNA (ctDNA) improves assay sensitivity in early-stage colorectal cancer (CRC) Kim, Seung-Tae; Raymond, Victoria M.; Park, Joon Oh; Zotenko, Elena; Park, Young Suk; Schultz, Matthew; Kang, Won Ki; Westesson, Oscar; Kim, Hee-Cheol; He, Yupeng; Odegaard, Justin I.; Mortimer, Stefanie A.; Greenleaf, William J.; Jaimovich, Ariel; Lee, Jeeyun; Talasaz, AmirAli Share Save
Analysis of clonal hematopoiesis-associated mutations in the cell-free DNA of advanced cancer patients Yen, Jennifer; Quinn, Katie; Helman, Elena; Chursov, Andrey; Nance, Tracy; Jaimovich, Ariel; Banks, Kimberly; Franovic, Aleksandra; Gleitsman, Kristin; Latham, John; Yablonovitch, Arielle; Sikora, Marcin; Fairclough, Stephen; Chudova, Darya; Lanman, Richard B.; Talasaz, AmirAli Share Save
Measuring Signaling and RNA-Seq in the Same Cell Links Gene Expression to Dynamic Patterns of NF-κB Activation Lane, Keara; Van Valen, David; DeFelice, Mialy M.; Macklin, Derek N.; Kudo, Takamasa; Jaimovich, Ariel; Carr, Ambrose; Meyer, Tobias; Pe'er, Dana; Boutet, Stephane C.; Covert, Markus W. Share Save
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