Not logged in Mutational topography reflects clinical neuroblastoma heterogeneity Rodriguez-Fos, Elias; Planas-Felix, Merce; Burkert, Martin; Puiggros, Montserrat; Toedling, Joern; Thiessen, Nina; Blanc, Eric; Szymansky, Annabell; Hertwig, Falk; Ishaque, Naveed; Beule, Dieter; Torrents, David; Eggert, Angelika; Koche, Richard P.; Schwarz, Roland F.; Haase, Kerstin; Schulte, Johannes H.; Henssen, Anton G. Share Save
Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (vol 52, pg 29, 2019) Koche, Richard P.; Rodriguez-Fos, Elias; Helmsauer, Konstantin; Burkert, Martin; MacArthur, Ian C.; Maag, Jesper; Chamorro, Rocio; Munoz-Perez, Natalia; Puiggros, Montserrat; Garcia, Heathcliff Dorado; Bei, Yi; Roeefzaad, Claudia; Bardinet, Victor; Szymansky, Annabell; Winkler, Annika; Thole, Theresa; Timme, Natalie; Kasack, Katharina; Fuchs, Steffen; Klironomos, Filippos; Thiessen, Nina; Blanc, Eric; Schmelz, Karin; Kuenkele, Annette; Hundsdoerfer, Patrick; Rosswog, Carolina; Theissen, Jessica; Beule, Dieter; Deubzer, Hedwig; Sauer, Sascha; Toedling, Joern; Fischer, Matthias; Hertwig, Falk; Schwarz, Roland F.; Eggert, Angelika; Torrents, David; Schulte, Johannes H.; Henssen, Anton G. Share Save
Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma Koche, Richard P.; Rodriguez-Fos, Elias; Helmsauer, Konstantin; Burkert, Martin; MacArthur, Ian C.; Maag, Jesper; Chamorro, Rocio; Munoz-Perez, Natalia; Puiggros, Montserrat; Dorado Garcia, Heathcliff; Bei, Yi; Roeefzaad, Claudia; Bardinet, Victor; Szymansky, Annabell; Winkler, Annika; Thole, Theresa; Timme, Natalie; Kasack, Katharina; Fuchs, Steffen; Klironomos, Filippos; Thiessen, Nina; Blanc, Eric; Schmelz, Karin; Kuenkele, Annette; Hundsdoerfer, Patrick; Rosswog, Carolina; Theissen, Jessica; Beule, Dieter; Deubzer, Hedwig; Sauer, Sascha; Toedling, Joern; Fischer, Matthias; Hertwig, Falk; Schwarz, Roland F.; Eggert, Angelika; Torrents, David; Schulte, Johannes H.; Henssen, Anton G. Share Save
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TUMOR NECROSIS FACTOR OVERCOMES IMMUNE EVASION IN P53-MUTANT MEDULLOBLASTOMA Garancher, Alexandra; Suzuki, Hiromichi; Haricharan, Svasti; Masihi, Meher Beigi; Rusert, Jessica M.; Norris, Paula S.; Carrette, Florent; Romero, Megan M.; Morrissy, Sorana A.; Skowron, Patryk; Cavalli, Florence M. G.; Farooq, Hamza; Ramaswamy, Vijay; Jones, Steven J. M.; Moore, Richard A.; Mungall, Andrew J.; Ma, Yussanne; Thiessen, Nina; Li, Yisu; Morcavallo, Alaide; Qi, Lin; Henderson, Jacob J.; Crawford, John R.; Levy, Michael L.; Olson, James M.; Cho, Yoon-Jae; Deshpande, Ani; Li, Xiao-Nan; Chesler, Louis; Marra, Marco A.; Becher, Oren J.; Bradley, Linda M.; Ware, Carl F.; Taylor, Michael D.; Wechsler-Reya, Robert J. Share Save
RhoGAP domain-containing fusions and PPAPDC1A fusions are recurrent and prognostic in diffuse gastric cancer Yang, Hanna; Hong, Dongwan; Cho, Soo Young; Park, Young Soo; Ko, Woo Ri; Kim, Ju Hee; Hur, Hoon; Lee, Jongkeun; Kim, Su-Jin; Kwon, Sun Young; Lee, Jae-Hyuk; Park, Do Youn; Song, Kyu Sang; Chang, Heekyung; Ryu, Min-Hee; Cho, Kye Soo; Kang, Jeong Won; Kook, Myeong-Cherl; Thiessen, Nina; He, An; Mungall, Andy; Han, Sang-Uk; Kim, Hark Kyun Share Save
Whole genome and whole transcriptome genomic profiling of a metastatic eccrine porocarcinoma Thibodeau, My Linh; Bonakdar, Melika; Zhao, Eric; Mungall, Karen L.; Reisle, Caralyn; Zhang, Wei; Bye, Morgan H.; Thiessen, Nina; Bleile, Dustin; Mungall, Andrew J.; Ma, Yussanne P.; Jones, Martin R.; Renouf, Daniel J.; Lim, Howard J.; Yip, Stephen; Ng, Tony; Ho, Cheryl; Laskin, Janessa; Marra, Marco A.; Schrader, Kasmintan A.; Jones, Steven J. M. Share Save
Clinical application of whole genome and transcriptome sequencing in cancer care Shen, Yaoqing; Jones, Martin R.; Pleasance, Erin; Bonakdar, Melika; Ch'ng, Carolyn; Reisle, Caralyn; Williamson, Laura; Majounie, Elisa; Taylor, Greg; Chan, Simon; Pierce, Brandon; Zhang, Wei; Muhammadzadeh, Amir; Zhao, Eric Y.; Bleile, Dustin; Mungall, Karen; Thiessen, Nina; Chuah, Eric; Wong, Tina; Corbett, Richard; Ma, Yussanne; Moore, Richard A.; Mungall, Andrew J.; Zhao, Yongjun; Yip, Stephen; Lee, Anna F.; Rassekh, Rod; Deyell, Rebecca; Lim, Howard; Renouf, Daniel; Roscoe, Robyn; Jones, Steven J. M.; Laskin, Janessa; Marra, Marco A. Share Save
Homologous Recombination Deficiency and Platinum-Based Therapy Outcomes in Advanced Breast Cancer Zhao, Eric Y.; Shen, Yaoqing; Pleasance, Erin; Kasaian, Katayoon; Leelakumari, Sreeja; Jones, Martin; Bose, Pinaki; Ch'ng, Carolyn; Reisle, Caralyn; Eirew, Peter; Corbett, Richard; Mungall, Karen L.; Thiessen, Nina; Ma, Yussanne; Schein, Jacqueline E.; Mungall, Andrew J.; Zhao, Yongjun; Moore, Richard A.; Den Brok, Wendie; Wilson, Sheridan; Villa, Diego; Shenkier, Tamara; Lohrisch, Caroline; Chia, Stephen; Yip, Stephen; Gelmon, Karen; Lim, Howard; Renouf, Daniel; Sun, Sophie; Schrader, Kasmintan A.; Young, Sean; Bosdet, Ian; Karsan, Aly; Laskin, Janessa; Marra, Marco A.; Jones, Steven J. M. Share Save
Sporadic Early-Onset Diffuse Gastric Cancers Have High Frequency of Somatic CDH1 Alterations, but Low Frequency of Somatic RHOA Mutations Compared With Late-Onset Cancers Cho, Soo Young; Park, Jun Won; Liu, Yang; Park, Young Soo; Kim, Ju Hee; Yang, Hanna; Um, Hyejin; Ko, Woo Ri; Lee, Byung Il; Kwon, Sun Young; Ryu, Seung Wan; Kwon, Chae Hwa; Park, Do Youn; Lee, Jae-Hyuk; Lee, Sang Il; Song, Kyu Sang; Hur, Hoon; Han, Sang-Uk; Chang, Heekyung; Kim, Su-Jin; Kim, Byung-Sik; Yook, Jeong-Hwan; Yoo, Moon-Won; Kim, Beom-Su; Lee, In-Seob; Kook, Myeong-Cherl; Thiessen, Nina; He, An; Stewart, Chip; Dunford, Andrew; Kim, Jaegil; Shih, Juliann; Saksena, Gordon; Cherniack, Andrew D.; Schumacher, Steven; Weiner, Amaro-Taylor; Rosenberg, Mara; Getz, Gad; Yang, Eun Gyeong; Ryu, Min-Hee; Bass, Adam J.; Kim, Hark Kyun Share Save
Breast cancer whole genomes link homologous recombination deficiency (HRD) with therapeutic outcomes Zhao, Eric Y.; Shen, Yaoqing; Pleasance, Erin; Kasaian, Katayoon; Jones, Martin R.; Ch'ng, Carolyn; Reisle, Caralyn; Eirew, Peter; Mungall, Karen; Thiessen, Nina; Ma, Yussanne; Fok, Alexandra; Mungall, Andrew J.; Zhao, Yongjun; Moore, Richard; Villa, Diego; Shenkier, Tamara; Lohrisch, Caroline; Chia, Stephen; Yip, Stephen; Gelmon, Karen; Lim, Howard; Sun, Sophie; Schrader, Kasmintan A.; Young, Sean; Karsan, Aly; Roscoe, Robyn; Laskin, Janessa; Marra, Marco A.; Jones, Steven J. Share Save
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Hippo Signaling Influences HNF4A and FOXA2 Enhancer Switching during Hepatocyte Differentiation Alder, Olivia; Cullum, Rebecca; Lee, Sam; Kan, Arohumam C.; Wei, Wei; Yi, Yuyin; Garside, Victoria C.; Bilenky, Misha; Griffith, Malachi; Morrissy, A. Sorana; Robertson, Gordon A.; Thiessen, Nina; Zhao, Yongjun; Chen, Qian; Pan, Duojia; Jones, Steven J. M.; Marra, Marco A.; Hoodless, Pamela A. Share Save
Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies Swanson, Lucas; Robertson, Gordon; Mungall, Karen L.; Butterfield, Yaron S.; Chiu, Readman; Corbett, Richard D.; Docking, T. Roderick; Hogge, Donna; Jackman, Shaun D.; Moore, Richard A.; Mungall, Andrew J.; Nip, Ka Ming; Parker, Jeremy D. K.; Qian, Jenny Qing; Raymond, Anthony; Sung, Sandy; Tam, Angela; Thiessen, Nina; Varhol, Richard; Wang, Sherry; Yorukoglu, Deniz; Zhao, YongJun; Hoodless, Pamela A.; Sahinalp, S. Cenk; Karsan, Aly; Birol, Inanc Share Save
Complete genomic landscape of a recurring sporadic parathyroid carcinoma Kasaian, Katayoon; Wiseman, Sam M.; Thiessen, Nina; Mungall, Karen L.; Corbett, Richard D.; Qian, Jenny Q.; Nip, Ka Ming; He, Ann; Tse, Kane; Chuah, Eric; Varhol, Richard J.; Pandoh, Pawan; McDonald, Helen; Zeng, Thomas; Tam, Angela; Schein, Jacquie; Birol, Inanc; Mungall, Andrew J.; Moore, Richard A.; Zhao, Yongjun; Hirst, Martin; Marra, Marco A.; Walker, Blair A.; Jones, Steven J. M. Share Save
Identification and analysis of murine pancreatic islet enhancers Tennant, B. R.; Robertson, A. G.; Kramer, M.; Li, L.; Zhang, X.; Beach, M.; Thiessen, N.; Chiu, R.; Mungall, K.; Whiting, C. J.; Sabatini, P. V.; Kim, A.; Gottardo, R.; Marra, M. A.; Lynn, F. C.; Jones, S. J. M.; Hoodless, P. A.; Hoffman, B. G. Share Save
Bromodomain-containing Protein 4 (BRD4) Regulates RNA Polymerase II Serine 2 Phosphorylation in Human CD4+T Cells Zhang, Weishi; Prakash, Celine; Sum, Calvin; Gong, Yue; Li, Yinghui; Kwok, Jeffrey J. T.; Thiessen, Nina; Pettersson, Sven; Jones, Steven J. M.; Knapp, Stefan; Yang, Henry; Chin, Keh-Chuang Share Save
Concurrent CIC mutations, IDH mutations, and 1p/19q loss distinguish oligodendrogliomas from other cancers Yip, Stephen; Butterfield, Yaron S.; Morozova, Olena; Chittaranjan, Suganthi; Blough, Michael D.; An, Jianghong; Birol, Inanc; Chesnelong, Charles; Chiu, Readman; Chuah, Eric; Corbett, Richard; Docking, Rod; Firme, Marlo; Hirst, Martin; Jackman, Shaun; Karsan, Aly; Li, Haiyan; Louis, David N.; Maslova, Alexandra; Moore, Richard; Moradian, Annie; Mungall, Karen L.; Perizzolo, Marco; Qian, Jenny; Roldan, Gloria; Smith, Eric E.; Tamura-Wells, Jessica; Thiessen, Nina; Varhol, Richard; Weiss, Samuel; Wu, Wei; Young, Sean; Zhao, Yongjun; Mungall, Andrew J.; Jones, Steven J. M.; Morin, Gregg B.; Chan, Jennifer A.; Cairncross, J. Gregory; Marra, Marco A. Share Save
SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing Geraldes, Armando; Pang, Johnson; Thiessen, Nina; Cezard, Timothee; Moore, Richard; Zhao, Yongjun; Tam, Angela; Wang, Shucai; Friedmann, Michael; Birol, Inanc; Jones, Steven J. M.; Cronk, Quentin C. B.; Douglas, Carl J. Share Save
De novo assembly and analysis of RNA-seq data Robertson, Gordon; Schein, Jacqueline; Chiu, Readman; Corbett, Richard; Field, Matthew; Jackman, Shaun D.; Mungall, Karen; Lee, Sam; Okada, Hisanaga Mark; Qian, Jenny Q.; Griffith, Malachi; Raymond, Anthony; Thiessen, Nina; Cezard, Timothee; Butterfield, Yaron S.; Newsome, Richard; Chan, Simon K.; She, Rong; Varhol, Richard; Kamoh, Baljit; Prabhu, Anna-Liisa; Tam, Angela; Zhao, YongJun; Moore, Richard A.; Hirst, Martin; Marra, Marco A.; Jones, Steven J. M.; Hoodless, Pamela A.; Birol, Inanc Share Save
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