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T

Thomas Eng

united states department of energy (doe)

19H-index
91Paper Count
2.9KCitation Count
Published Papers 24
Publication Date
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Biosensor-driven strain engineering reveals key cellular processes for maximizing isoprenol production in Pseudomonas putida
errScience Advances
IF12.5
err2025-10-24
err0
PREAI
errJavier Menasalvas; Shawn Kulakowski; Yan Chen; Jennifer W. Gin; Emine Akyuz Turumtay; Nawa Raj Baral; Morgan A. Apolonio; Alex Rivier; Ian S. Yunus; Megan E. Garber; Corinne D. Scown; Paul D. Adams; Taek Soon Lee; Ian K. Blaby; Edward E. K. Baidoo; Christopher J. Petzold; Thomas Eng; Aindrila Mukhopadhyay
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errSave
Differences in GenBank and RefSeq annotations may affect genomics data interpretation for Pseudomonas putida KT2440
errMSPHERE
IF3.1
err2025-10-01
err0
PREAI
errde Siqueira, Guilherme Marcelino Viana; Eng, Thomas; Mukhopadhyay, Aindrila; Guazzaroni, Maria-Eugenia
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errSave
Evolution-guided tolerance engineering of Pseudomonas putida KT2440 for production of the aviation fuel precursor isoprenol
errMetabolic Engineering
IF6.8
err2025-05-19
err0
PREAI
errHyun Gyu Lim; Aparajitha Srinivasan; Russel Menchavez; Ian S. Yunus; Myung Hyun Noh; Megan White; Yan Chen; Jennifer W. Gin; Bernhard O. Palsson; Taek Soon Lee; Christopher J. Petzold; Thomas Eng; Aindrila Mukhopadhyay; Adam M. Feist
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errSave
Alternate routes to acetate tolerance lead to varied isoprenol production from mixed carbon sources in Pseudomonas putida
errAPPLIED AND ENVIRONMENTAL MICROBIOLOGY
IF3.7
err2025-03-01
err0
errOAAI
errde Siqueira, Guilherme M. V.; Srinivasan, Aparajitha; Chen, Yan; Gin, Jennifer W.; Petzold, Christopher J.; Lee, Taek Soon; Guazzaroni, Maria-Eugenia; Eng, Thomas; Mukhopadhyay, Aindrila
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errSave
Microbial Pathways for Cost-Effective Low-Carbon Renewable Indigoidine
errACS SUSTAINABLE CHEMISTRY & ENGINEERING
IF7.3
err2025-02-14
err0
PREAI
errBaral, NR; Banerjee, D; Eng, T; Simmons, BA; Mukhopadhyay, A; Scown, CD
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errSave
Addressing genome scale design tradeoffs in Pseudomonas putida for bioconversion of an aromatic carbon source
errNPJ SYSTEMS BIOLOGY AND APPLICATIONS
IF3.5
err2025-01-14
err0
errOAAI
errBanerjee, Deepanwita; Menasalvas, Javier; Chen, Yan; Gin, Jennifer W.; Baidoo, Edward E. K.; Petzold, Christopher J.; Eng, Thomas; Mukhopadhyay, Aindrila
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errSave
Assessing horizontal gene transfer in the rhizosphere of Brachypodium distachyon using fabricated ecosystems (EcoFABs)
errAPPLIED AND ENVIRONMENTAL MICROBIOLOGY
IF3.7
err2024-11-20
err0
errOAAI
errPriya, Shweta; Rossbach, Silvia; Eng, Thomas; Lin, Hsiao-Han; Andeer, Peter F.; Mortimer, Jenny C.; Northen, Trent R.; Mukhopadhyay, Aindrila
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errSave
Development of modular expression across phylogenetically distinct diazotrophs
errJOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
IF3.2
err2024-09-10
err0
errOAAI
errKulakowski, Shawn; Rivier, Alex; Kuo, Rita; Mengel, Sonya; Eng, Thomas
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errSave
Desiccated Cyanobacteria Serve As Efficient Plasmid DNA Carriers in Space Flight
errACS SYNTHETIC BIOLOGY
IF3.9
err2024-08-16
err0
errOAAI
errKakouridis, Anne; Diamond, Spencer; Eng, Thomas; Mills, Heath J.; Holzhaus, Olivia Gamez; Summers, Michael L.; Garcia-Pichel, Ferran; Mukhopadhyay, Aindrila
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errSave
Sustainable production of 2,3,5,6-Tetramethylpyrazine at high titer in engineered Corynebacterium glutamicum
errJOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
IF3.2
err2024-07-16
err3
errOAAI
errSrinivasan, Aparajitha; Chen-Xiao, Kevin; Banerjee, Deepanwita; Oka, Asun; Pidatala, Venkataramana R.; Eudes, Aymerick; Simmons, Blake A.; Eng, Thomas; Mukhopadhyay, Aindrila
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errSave
Maximizing microbial bioproduction from sustainable carbon sources using iterative systems engineering
errCELL REPORTS
IF6.9
err2023-09-01
err8
errOAAI
errEng, Thomas; Banerjee, Deepanwita; Menasalvas, Javier; Chen, Yan; Gin, Jennifer; Choudhary, Hemant; Baidoo, Edward; Chen, Jian Hua; Ekman, Axel; Kakumanu, Ramu; Diercks, Yuzhong Liu; Codik, Alex; Larabell, Carolyn; Gladden, John; Simmons, Blake A.; Keasling, Jay D.; Petzold, Christopher J.; Mukhopadhyay, Aindrila
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errSave
Development of genetic tools for heterologous protein expression in a pentose- utilizing environmental isolate of Pseudomonas putida
errMICROBIAL BIOTECHNOLOGY
IF5.2
err2023-01-24
err3
errOAAI
errGauttam, Rahul; Eng, Thomas; Zhao, Zhiying; Rana, Qurrat ul Ain; Simmons, Blake A.; Yoshikuni, Yasuo; Mukhopadhyay, Aindrila; Singer, Steven W.
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errSave
Tuning a high performing multiplexed-CRISPRi Pseudomonas putida strain to further enhance indigoidine production
errmetabolic engineering
IF4.1
err2022-12-01
err15
errOAAI
errCzajka, Jeffrey J.; Banerjee, Deepanwita; Eng, Thomas; Menasalvas, Javier; Yan, Chunsheng; Munoz, Nathalie Munoz; Poirier, Brenton C.; Kim, Young-Mo; Baker, Scott E.; Tang, Yinjie J.; Mukhopadhyay, Aindrila
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errSave
Generation of Pseudomonas putida KT2440 Strains with Efficient Utilization of Xylose and Galactose via Adaptive Laboratory Evolution
errACS SUSTAINABLE CHEMISTRY & ENGINEERING
IF7.3
err2021-08-19
err30
errOAAI
errLim, Hyun Gyu; Eng, Thomas; Banerjee, Deepanwita; Alarcon, Geovanni; Lau, Andrew K.; Park, Mee-Rye; Simmons, Blake A.; Palsson, Bernhard O.; Singer, Steven W.; Mukhopadhyay, Aindrila; Feist, Adam M.
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errSave
Engineering Pseudomonas putida for efficient aromatic conversion to bioproduct using high throughput screening in a bioreactor
errMETABOLIC ENGINEERING
IF6.8
err2021-07-01
err30
errOAAI
errEng, Thomas; Banerjee, Deepanwita; Lau, Andrew K.; Bowden, Emily; Herbert, Robin A.; Trinh, Jessica; Prahl, Jan-Philip; Deutschbauer, Adam; Tanjore, Deepti; Mukhopadhyay, Aindrila
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errSave
Genome-scale metabolic rewiring improves titers rates and yields of the non-native product indigoidine at scale
errNATURE COMMUNICATIONS
IF15.7
err2020-10-23
err80
errOAAI
errBanerjee, Deepanwita; Eng, Thomas; Lau, Andrew K.; Sasaki, Yusuke; Wang, Brenda; Chen, Yan; Prahl, Jan-Philip; Singan, Vasanth R.; Herbert, Robin A.; Liu, Yuzhong; Tanjore, Deepti; Petzold, Christopher J.; Keasling, Jay D.; Mukhopadhyay, Aindrila
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errSave
Generation of ionic liquid tolerant Pseudomonas putida KT2440 strains via adaptive laboratory evolution
errGREEN CHEMISTRY
IF9.2
err2020-01-01
err25
errOAAI
errLim, Hyun Gyu; Fong, Bonnie; Alarcon, Geovanni; Magurudeniya, Harsha D.; Eng, Thomas; Szubin, Richard; Olson, Connor A.; Palsson, Bernhard O.; Gladden, John M.; Simmons, Blake A.; Mukhopadhyay, Aindrila; Singer, Steven W.; Feist, Adam M.
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errSave
Engineering Robust Production Microbes for Large-Scale Cultivation
errTRENDS IN MICROBIOLOGY
IF14.9
err2019-06-01
err177
errOAAI
errWehrs, Maren; Tanjore, Deepti; Eng, Thomas; Lievense, Jeff; Pray, Todd R.; Mukhopadhyay, Aindrila
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errSave
Engineering Corynebacterium glutamicum to produce the biogasoline isopentenol from plant biomass hydrolysates
errBIOTECHNOLOGY FOR BIOFUELS
IF6.1
err2019-02-27
err46
errOAAI
errSasaki, Yusuke; Eng, Thomas; Herbert, Robin A.; Trinh, Jessica; Chen, Yan; Rodriguez, Alberto; Gladden, John; Simmons, Blake A.; Petzold, Christopher J.; Mukhopadhyay, Aindrila
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Restoration of biofuel production levels and increased tolerance under ionic liquid stress is enabled by a mutation in the essential Escherichia coli gene cydC
errMICROBIAL CELL FACTORIES
IF4.9
err2018-10-08
err34
errOAAI
errEng, Thomas; Demling, Philipp; Herbert, Robin A.; Chen, Yan; Benites, Veronica; Martin, Joel; Lipzen, Anna; Baidoo, Edward E. K.; Blank, Lars M.; Petzold, Christopher J.; Mukhopadhyay, Aindrila
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errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
B
Bernhard Ø. Palsson
H-index: 166 · Papers: 1.2K
J
Jay D. Keasling
H-index: 128 · Papers: 857
P
Paul D. Adams
H-index: 99 · Papers: 578
B
Blake A. Simmons
H-index: 96 · Papers: 734
L
Lars M. Blank
H-index: 69 · Papers: 602
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