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M

Matthew J. Berberich

Harvard University

11H-index
26Paper Count
756Citation Count
Published Papers 16
Publication Date
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Corrigendum to “Comprehensive Proteomics Metadata and Integrative Web Portals Facilitate Sharing and Integration of LINCS Multiomics Data”
errMolecular & Cellular Proteomics
IF5.5
err2025-08-07
err0
PREAI
errDušica Vidović; Behrouz Shamsaei; Stephan C. Schürer; Phillip Kogan; Szymon Chojnacki; Michal Kouril; Mario Medvedovic; Wen Niu; Evren U. Azeloglu; Marc R. Birtwistle; Yibang Chen; Tong Chen; Jens Hansen; Bin Hu; Ravi Iyengar; Gomathi Jayaraman; Hong Li; Tong Liu; Eric A. Sobie; Yuguang Xiong; Matthew J. Berberich; Gary Bradshaw; Mirra Chung; Robert A. Everley; Ben Gaudio; Marc Hafner; Marian Kalocsay; Caitlin E. Mills; Maulik K. Nariya; Peter K. Sorger; Kartik Subramanian; Chiara Victor; Maria Banuelos; Victoria Dardov; Ronald Holewinski; Danica-Mae Manalo; Berhan Mandefro; Andrea D. Matlock; Loren Ornelas; Dhruv Sareen; Clive N. Svendsen; Vineet Vaibhav; Jennifer E. Van Eyk; Vidya Venkatraman; Steve Finkbiener; Ernest Fraenkel; Jeffrey Rothstein; Leslie Thompson; Jacob Asiedu; Steven A. Carr; Karen E. Christianson; Desiree Davison; Deborah O. Dele-Oni; Katherine C. DeRuff; Shawn B. Egri; Alvaro Sebastian Vaca Jacome; Jacob D. Jaffe; Daniel Lam; Lev Litichevskiy; Xiaodong Lu; James Mullahoo; Adam Officer; Malvina Papanastasiou; Ryan Peckner; Caidin Toder; Joel Blanchard; Michael Bula; Tak Ko; Li-Huei Tsai; Jennie Z. Young; Vagisha Sharma; Jarek Meller; Michael J. MacCoss
errShare
errSave
Catalytic Degraders Effectively Address Kinase Site Mutations in EML4-ALK Oncogenic Fusions
errJOURNAL OF MEDICINAL CHEMISTRY
IF6.8
err2023-04-10
err18
PREAI
errGao, Yang; Jiang, Baishan; Kim, Hellen; Berberich, Matthew J.; Che, Jianwei; Donovan, Katherine A.; Hatcher, John M.; Huerta, Fidel; Kwiatkowski, Nicholas P.; Liu, Yingpeng; Liuni, Peter P.; Metivier, Rebecca J.; Murali, Vineeth K.; Nowak, Radoslaw P.; Zhang, Tinghu; Fischer, Eric S.; Gray, Nathanael S.; Jones, Lyn H.
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errSave
Combining chemoproteomics with machine learning identifies functionally active covalent fragments for hard-to-drug cancer drivers
errCANCER RESEARCH
IF16.6
err2023-04-04
err0
PREAI
errHermann, Johannes C.; Everley, Robert; Marholz, Laura; Berberich, Matthew; Yang, Tzu-Yi; Chao, Yu-Hsin; Awol, Abduselam K.; Shaghafi, Michael; Yoon, Han; Varma, Rohan; Stein, Reed; Krug, Karsten; Lachtara, Emily; Erlanson, Daniel; Varma, Chris; Webster, Kevin R.
errShare
errSave
Time-series transcriptomics and proteomics reveal alternative modes to decode p53 oscillations
errMOLECULAR SYSTEMS BIOLOGY
IF7.7
err2022-03-14
err0
errOAAI
errJimenez, Alba; Lu, Dan; Kalocsay, Marian; Berberich, Matthew J.; Balbi, Petra; Jambhekar, Ashwini; Lahav, Galit
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errSave
Discovery and resistance mechanism of a selective CDK12 degrader
errNATURE CHEMICAL BIOLOGY
IF13.7
err2021-03-22
err84
errOAAI
errJiang, Baishan; Gao, Yang; Che, Jianwei; Lu, Wenchao; Kaltheuner, Ines H.; Dries, Ruben; Kalocsay, Marian; Berberich, Matthew J.; Jiang, Jie; You, Inchul; Kwiatkowski, Nicholas; Riching, Kristin M.; Daniels, Danette L.; Sorger, Peter K.; Geyer, Matthias; Zhang, Tinghu; Gray, Nathanael S.
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errSave
Impact of Zika virus on the human type I interferon osteoimmune response
errCYTOKINE
IF3.7
err2021-01-01
err3
PREAI
errDrouin, Arnaud; Wallbillich, Nicholas; Theberge, Marc; Liu, Sharon; Katz, Joshua; Bellovoda, Kamela; Cheon, Scarlett Se Yun; Gootkind, Frederick; Bierman, Emily; Zavras, Jason; Berberich, Matthew J.; Kalocsay, Marian; Guastaldi, Fernando; Salvadori, Nicolas; Troulis, Maria; Fusco, Dahlene N.
errShare
errSave
Targeting immunosuppressive macrophages overcomes PARP inhibitor resistance in BRCA1-associated triple-negative breast cancer
errNATURE CANCER
IF28.5
err2020-12-14
err158
errOAAI
errMehta, Anita K.; Cheney, Emily M.; Hartl, Christina A.; Pantelidou, Constantia; Oliwa, Madisson; Castrillon, Jessica A.; Lin, Jia-Ren; Hurst, Katie E.; de Oliveira Taveira, Mateus; Johnson, Nathan T.; Oldham, William M.; Kalocsay, Marian; Berberich, Matthew J.; Boswell, Sarah A.; Kothari, Aditi; Johnson, Shawn; Dillon, Deborah A.; Lipschitz, Mikel; Rodig, Scott; Santagata, Sandro; Garber, Judy E.; Tung, Nadine; Yelamos, Jose; Thaxton, Jessica E.; Mittendorf, Elizabeth A.; Sorger, Peter K.; Shapiro, Geoffrey I.; Guerriero, Jennifer L.
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errSave
PARP inhibition modulates the infiltration, phenotype and function of tumor-associated macrophages (TAMs) in BRCA-associated breast cancer and can be augmented by harnessing the anti-tumor potential of TAMs
errCANCER RESEARCH
IF16.6
err2020-02-15
err0
PREAI
errGuerriero, Jennifer L.; Mehta, Anita K.; Cheney, Emily M.; Castrillon, Jessica A.; Lin, Jia-Ren; Taveira, Mateus de Oliveira; Sonzogni, Olmo; Pantelidou, Constantia; Hartl, Christina A.; Oldham, William M.; Johnson, Nathan T.; Boswell, Sarah A.; Kalocsay, Marian; Berberich, Matthew J.; Mei, Sholin; Wang, Dan; Johnson, Shawn; Gross, Brett; Dillon, Deborah A.; Lipschitz, Mikel; Gjini, Evisa; Rodig, Scott; Santagata, Sandro; Garber, Judy E.; Tung, Nadine; Sorger, Peter; Shapiro, Geoffrey I.; Wulf, Gerburg M.; Mittendorf, Elizabeth A.
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errSave
Leveraging Compound Promiscuity to Identify Targetable Cysteines within the Kinome
errCELL CHEMICAL BIOLOGY
IF7.2
err2019-06-01
err42
errOAAI
errRao, Suman; Gurbani, Deepak; Du, Guangyan; Everley, Robert A.; Browne, Christopher M.; Chaikuad, Apirat; Tan, Li; Schroeder, Martin; Gondi, Sudershan; Ficarro, Scott B.; Sim, Taebo; Kim, Nam Doo; Berberich, Matthew J.; Knapp, Stefan; Marto, Jarrod A.; Westover, Kenneth D.; Sorger, Peter K.; Gray, Nathanael S.
errShare
errSave
Discovery of Covalent CDK14 Inhibitors with Pan-TAIRE Family Specificity
errCELL CHEMICAL BIOLOGY
IF7.2
err2019-06-01
err21
errOAAI
errFerguson, Fleur M.; Doctor, Zainab M.; Ficarro, Scott B.; Browne, Christopher M.; Marto, Jarrod A.; Johnson, Jared L.; Yaron, Tomer M.; Cantley, Lewis C.; Kim, Nam Doo; Sim, Taebo; Berberich, Matthew J.; Kalocsay, Marian; Sorger, Peter K.; Gray, Nathanael S.
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errSave
The Activation State of CD4 T Cells Alters Cellular Peptidase Activities, HIV Antigen Processing, and MHC Class I Presentation in a Sequence-Dependent Manner
errJOURNAL OF IMMUNOLOGY
IF3.4
err2019-05-15
err6
errOAAI
errBoucau, Julie; Madouasse, Julien; Kourjian, Georgio; Carlin, Christopher S.; Wambua, Daniel; Berberich, Matthew J.; Le Gall, Sylvie
errShare
errSave
MS3-IDQ: Utilizing MS3 Spectra beyond Quantification Yields Increased Coverage of the Phosphoproteome in Isobaric Tag Experiments
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2018-02-20
err6
errOAAI
errBerberich, Matthew J.; Paulo, Joao A.; Everley, Robert A.
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errSave
Analysis of Major Histocompatibility Complex-Bound HIV Peptides Identified from Various Cell Types Reveals Common Nested Peptides and Novel T Cell Responses
errJOURNAL OF VIROLOGY
IF3.8
err2016-10-01
err16
errOAAI
errRucevic, Marijana; Kourjian, Georgio; Boucau, Julie; Blatnik, Renata; Bertran, Wilfredo Garcia; Berberich, Matthew J.; Walker, Bruce D.; Riemer, Angelika B.; Le Gall, Sylvie
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errSave
HIV Protease Inhibitor-Induced Cathepsin Modulation Alters Antigen Processing and Cross-Presentation
errJOURNAL OF IMMUNOLOGY
IF3.4
err2016-05-01
err20
errOAAI
errKourjian, Georgio; Rucevic, Marijana; Berberich, Matthew J.; Dinter, Jens; Wambua, Daniel; Boucau, Julie; Le Gall, Sylvie
errShare
errSave
Variable Processing and Cross-presentation of HIV by Dendritic Cells and Macrophages Shapes CTL Immunodominance and Immune Escape
errPLOS PATHOGENS
IF4.9
err2015-03-17
err33
errOAAI
errDinter, Jens; Duong, Ellen; Lai, Nicole Y.; Berberich, Matthew J.; Kourjian, Georgio; Bracho-Sanchez, Edith; Chu, Duong; Su, Hang; Zhang, Shao Chong; Le Gall, Sylvie
errShare
errSave
In vitro evaluation of digestive and endolysosomal enzymes to cleave CML-modified Ara h 1 peptides
errFOOD SCIENCE & NUTRITION
IF3.8
err2015-03-12
err8
errOAAI
errMattison, Christopher P.; Dinter, Jens; Berberich, Matthew J.; Chung, Si-Yin; Reed, Shawndrika S.; Le Gall, Sylvie; Grimm, Casey C.
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
L
Lewis C. Cantley
H-index: 214 · Papers: 1.4K
B
Bruce D. Walker
H-index: 160 · Papers: 945
S
Steven A. Carr
H-index: 152 · Papers: 987
N
Nathanael S. Gray
H-index: 145 · Papers: 1.5K
J
Judy E. Garber
H-index: 130 · Papers: 972
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