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Kalai Mathee

Florida International University

43H-index
173Paper Count
8.0KCitation Count
Published Papers 42
Publication Date
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EMoMiS: A pipeline for epitope-based molecular mimicry search in protein structures with potential applications to SARS-CoV-2
errComputational and Structural Biotechnology Journal
IF4.1
err2026-02-02
err0
errOAAI
errVitalii Stebliankin; Rajeshwari Chellappan; Prabin Baral; Christian Balbin; Janelle Nunez-Castilla; Masrur Sobhan; Trevor Cickovski; Ashleigh N. Riegler; Ananda Mohan Mondal; Jessica Siltberg-Liberles; Prem Chapagain; Sathibalan Ponniah; Sixto M. Leal; Kalai Mathee; Giri Narasimhan
errShare
errSave
MetaEdit: Computational Identification of RNA Editing in Microbiomes
errCOMPUTATIONAL ADVANCES IN BIO AND MEDICAL SCIENCES, ICCABS 2025
IF0
err2026-01-01
err1
PREAI
errMehta, Arpit; Stebliankini, Vitalii; Mathee, Kalai; Narasimhani, Giri
errShare
errSave
Unfolding and de-confounding: biologically meaningful causal inference from longitudinal multi-omic networks using METALICA
errMSYSTEMS
IF4.6
err2024-10-22
err1
errOAAI
errRuiz-Perez, Daniel; Gimon, Isabella; Sazal, Musfiqur; Mathee, Kalai; Narasimhan, Giri
errShare
errSave
Differences in gut microbiota between Dutch and South-Asian Surinamese: potential implications for type 2 diabetes mellitus
errSCIENTIFIC REPORTS
IF3.9
err2024-02-26
err1
errOAAI
errNayman, Eric I.; Schwartz, Brooke A.; Polmann, Michaela; Gumabong, Alayna C.; Nieuwdorp, Max; Cickovski, Trevor; Mathee, Kalai
errShare
errSave
Evaluating protein binding interfaces with transformer networks
errNATURE MACHINE INTELLIGENCE
IF23.9
err2023-09-07
err7
PREAI
errStebliankin, Vitalii; Shirali, Azam; Baral, Prabin; Shi, Jimeng; Chapagain, Prem; Mathee, Kalai; Narasimhan, Giri
errShare
errSave
Raising awareness of antimicrobial resistance: development of an 'antibiotic footprint calculator'
errJOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
IF3.6
err2023-04-18
err0
errOAAI
errPrapharsavat, Ravikanya; Kittikongnapang, Rattanasiri; Smithkittipol, Chokdee; Udomrat, Warute; Numsawat, Sukanya; Hernandez-Koutoucheva, Anastasia; Naemiratch, Bhensri; Chomkatekaew, Chalita; Amaratunga, Chanaki; Bleho, John; Mathee, Kalai; Schneiders, Mira Leonie; Khirikoekkong, Napat; Kanthawang, Nipaphan; Sumpradit, Nithima; Suveeranont, Rapee; Asarath, Supa-at; Poomchaichote, Tassawan; Schilling, William; Chan, Xin Hui S.; Osterrieder, Anne; Cheah, Phaik Yeong; Limmathurotsakul, Direk
errShare
errSave
A novel approach for combining the metagenome, metaresistome, metareplicome and causal inference to determine the microbes and their antibiotic resistance gene repertoire that contribute to dysbiosis
errMICROBIAL GENOMICS
IF4
err2022-12-20
err2
errOAAI
errStebliankin, Vitalii; Sazal, Musfiqur; Valdes, Camilo; Mathee, Kalai; Narasimhan, Giri
errShare
errSave
Prior exposure to microcystin alters host gut resistome and is associated with dysregulated immune homeostasis in translatable mouse models
errSCIENTIFIC REPORTS
IF3.9
err2022-07-07
err14
errOAAI
errSaha, Punnag; Bose, Dipro; Stebliankin, Vitalii; Cickovski, Trevor; Seth, Ratanesh K.; Porter, Dwayne E.; Brooks, Bryan W.; Mathee, Kalai; Narasimhan, Giri; Colwell, Rita; Scott, Geoff, I; Chatterjee, Saurabh
errShare
errSave
Potential Autoimmunity Resulting from Molecular Mimicry between SARS-CoV-2 Spike and Human Proteins
errVIRUSES-BASEL
IF3.5
err2022-06-28
err47
errOAAI
errNunez-Castilla, Janelle; Stebliankin, Vitalii; Baral, Prabin; Balbin, Christian A.; Sobhan, Masrur; Cickovski, Trevor; Mondal, Ananda Mohan; Narasimhan, Giri; Chapagain, Prem; Mathee, Kalai; Siltberg-Liberles, Jessica
errShare
errSave
Rhizospheric and endophytic Pseudomonas aeruginosa in edible vegetable plants share molecular and metabolic traits with clinical isolates
errJOURNAL OF APPLIED MICROBIOLOGY
IF3.2
err2022-04-01
err13
errOAAI
errAmbreetha, Sakthivel; Marimuthu, Ponnusamy; Mathee, Kalai; Balachandar, Dananjeyan
errShare
errSave
New dynamic microreactor system to mimic biofilm formation and test anti-biofilm activity of nanoparticles
errAPPLIED MICROBIOLOGY AND BIOTECHNOLOGY
IF4.3
err2022-03-24
err5
PREAI
errBourguignon, Natalia; Kamat, Vivek; Perez, Maximiliano; Mathee, Kalai; Lerner, Betiana; Bhansali, Shekhar
errShare
errSave
Dynamic Bayesian Networks for Integrating Multi-omics Time Series Microbiome Data
errMSYSTEMS
IF4.6
err2021-04-27
err27
errOAAI
errRuiz-Perez, Daniel; Lugo-Martinez, Jose; Bourguignon, Natalia; Mathee, Kalai; Lerner, Betiana; Bar-Joseph, Ziv; Narasimhan, Giri
errShare
errSave
Causal effects in microbiomes using interventional calculus
errSCIENTIFIC REPORTS
IF3.9
err2021-03-11
err7
errOAAI
errSazal, Musfiqur; Stebliankin, Vitalii; Mathee, Kalai; Yoo, Changwon; Narasimhan, Giri
errShare
errSave
Inferring directional relationships in microbial communities using signed Bayesian networks
errBMC GENOMICS
IF3.7
err2020-12-21
err15
errOAAI
errSazal, Musfiqur; Mathee, Kalai; Ruiz-Perez, Daniel; Cickovski, Trevor; Narasimhan, Giri
errShare
errSave
Composition of the Vaginal Microbiome Associated with High Risk HPV Infection and Increased Risk for Cervical Cancer
errCANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION
IF3.4
err2020-03-04
err2
PREAI
errMadhivanan, P.; Bokulich, N. A.; Coudray, M.; Colbert, B.; Ruiz-Perez, D.; Krupp, K.; Mathee, K.; Narasimhan, G.; Caporaso, J. G.
errShare
errSave
CO-OCCURRENCE OF BACTERIAL VAGINOSIS AND TRICHOMONAS VAGINALIS AMONG YOUNG AFRICAN AMERICAN WOMEN
errSEXUALLY TRANSMITTED INFECTIONS
IF2.9
err2019-07-14
err0
errOAAI
errMadhivanan, Purnima; Coudray, Makella; Ruiz-Perez, Daniel; Colbert, Brett; Krupp, Karl; Kumar, Hansi; Narasimhan, Giri; Mathee, Kalai
errShare
errSave
BACTERIAL VAGINOSIS AND HIGH-RISK HUMAN PAPILLOMAVIRUS COINFECTION AMONG AFRICAN AMERICAN WOMEN IN THE UNITED STATES
errSEXUALLY TRANSMITTED INFECTIONS
IF2.9
err2019-07-14
err0
errOAAI
errMadhivanan, Purnima; Coudray, Makella; Ruiz-Perez, Daniel; Colbert, Brett; Krupp, Karl; Kumari, Hansi; Mathee, Kalai; Narasimhan, Giri
errShare
errSave
EFFECT OF METRONIDAZOLE TREATMENT ON RECURRENT AND PERSISTENT BACTERIAL VAGINOSIS: A PILOT STUDY
errSEXUALLY TRANSMITTED INFECTIONS
IF2.9
err2019-07-14
err0
errOAAI
errCoudray, Makella; Ruiz-Perez, Daniel; Colbert, Brett; Krupp, Karl; Kumari, Hansi; Narasimhan, Giri; Mathee, Kalai; Madhivanan, Purnima
errShare
errSave
DORA Editorial
errJOURNAL OF GENERAL VIROLOGY
IF4.3
err2019-01-01
err1
errOAAI
errParish, Tanya; Harris, Mark; Fry, Norman; Mathee, Kalai; Trujillo, Martha E.; Bentley, Stephen; Thomson, Nicholas
errShare
errSave
DORA Editorial
errMICROBIAL GENOMICS
IF4
err2018-12-01
err1
errOAAI
errParish, Tanya; Harris, Mark; Fry, Norman; Mathee, Kalai; Trujillo, Martha E.; Bentley, Stephen; Thomson, Nicholas
errShare
errSave

Research Directions

The data has not been retrieved yet.
Co-authors
Cooperation Journals
R
Rita R. Colwell
H-index: 125 · Papers: 1.1K
N
Niels Høiby
H-index: 116 · Papers: 865
P
Paul Williams
H-index: 114 · Papers: 679
S
Stephen D. Bentley
H-index: 102 · Papers: 504
B
Bruce W. Birren
H-index: 97 · Papers: 246
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