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SBDH-Reader: a large language model-powered method for extracting social and behavioral determinants of health from clinical notes Gu, Zifan; He, Lesi; Naeem, Awais; Chan, Pui Man; Mohamed, Asim; Khalil, Hafsa; Guo, Yujia; Huang, Jingwei; Villanueva-Miranda, Ismael; Ding, Ying; Shi, Wenqi; Dupre, Matthew E.; Xiao, Guanghua; Peterson, Eric D.; Xie, Yang; Navar, Ann Marie; Yang, Donghan M. Share Save
Cell Segmentation With Globally Optimized Boundaries (CSGO): A Deep Learning Pipeline for Whole-Cell Segmentation in Hematoxylin-and-Eosin-Stained Tissues Gu, Zifan; Wang, Shidan; Rong, Ruichen; Zhao, Zhuo; Wu, Fangjiang; Zhou, Qin; Wen, Zhuoyu; Chi, Zhikai; Fang, Yisheng; Peng, Yan; Jia, Liwei; Chen, Mingyi; Yang, Donghan M.; Hoshida, Yujin; Xie, Yang; Xiao, Guanghua Share Save
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Mapping cellular interactions from spatially resolved transcriptomics data Zhu, James; Wang, Yunguan; Chang, Woo Yong; Malewska, Alicia; Napolitano, Fabiana; Gahan, Jeffrey C.; Unni, Nisha; Zhao, Min; Yuan, Rongqing; Wu, Fangjiang; Yue, Lauren; Guo, Lei; Zhao, Zhuo; Chen, Danny Z.; Hannan, Raquibul; Zhang, Siyuan; Xiao, Guanghua; Mu, Ping; Hanker, Ariella B.; Strand, Douglas; Arteaga, Carlos L.; Desai, Neil; Wang, Xinlei; Xie, Yang; Wang, Tao Share Save
A Pan-Cancer Patient-Derived Xenograft Histology Image Repository with Genomic and Pathologic Annotations Enables Deep Learning Analysis White, Brian S.; Woo, Xing Yi; Koc, Soner; Sheridan, Todd; Neuhauser, Steven B.; Wang, Shidan; Evrard, Yvonne A.; Chen, Li; Pour, Ali Foroughi; Landua, John D.; Mashl, R. Jay; Davies, Sherri R.; Fang, Bingliang; Rosa, Maria Gabriela; Evans, Kurt W.; Bailey, Matthew H.; Chen, Yeqing; Xiao, Min; Rubinstein, Jill C.; Sanderson, Brian J.; Lloyd, Michael W.; Domanskyi, Sergii; Dobrolecki, Lacey E.; Fujita, Maihi; Fujimoto, Junya; Xiao, Guanghua; Fields, Ryan C.; Mudd, Jacqueline L.; Xu, Xiaowei; Hollingshead, Melinda G.; Jiwani, Shahanawaz; Acevedo, Saul; Davis-Dusenbery, Brandi N.; Robinson, Peter N.; Moscow, Jeffrey A.; Doroshow, James H.; Mitsiades, Nicholas; Kaochar, Salma; Pan, Chong-xian; Carvajal-Carmona, Luis G.; Welm, Alana L.; Welm, Bryan E.; Govindan, Ramaswamy; Li, Shunqiang; Davies, Michael A.; Roth, Jack A.; Meric-Bernstam, Funda; Xie, Yang; Herlyn, Meenhard; Ding, Li; Lewis, Michael T.; Bult, Carol J.; Dean II, Dennis A.; Chuang, Jeffrey H. Share Save
Deep Learning-Based Automated Measurement of Murine Bone Length in Radiographs Rong, Ruichen; Denton, Kristin; Jin, Kevin W.; Quan, Peiran; Wen, Zhuoyu; Kozlitina, Julia; Lyon, Stephen; Wang, Aileen; Wise, Carol A.; Beutler, Bruce; Yang, Donghan M.; Li, Qiwei; Rios, Jonathan J.; Xiao, Guanghua Share Save
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Deep LearningeBased H-Score Quantification of Immunohistochemistry-Stained Images Wen, Zhuoyu; Luo, Danni; Wang, Shidan; Rong, Ruichen; Evers, Bret M.; Jia, Liwei; Fang, Yisheng; Daoud, Elena, V; Yang, Shengjie; Gu, Zifan; Arnerc, Emily N.; Lewis, Cheryl M.; Soto, Luisa M. Solis; Fujimoto, Junya; Behrens, Carmen; Wistuba, Ignacio I.; Yang, Donghan M.; Brekken, Rolf A.; O'Donnell, Kathryn A.; Xie, Yang; Xiao, Guanghua Share Save
Deep learning of cell spatial organizations identifies clinically relevant insights in tissue images Wang, Shidan; Rong, Ruichen; Zhou, Qin; Yang, Donghan M.; Zhang, Xinyi; Zhan, Xiaowei; Bishop, Justin; Chi, Zhikai; Wilhelm, Clare J.; Zhang, Siyuan; Pickering, Curtis R.; Kris, Mark G.; Minna, John; Xie, Yang; Xiao, Guanghua Share Save
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A Deep Learning Approach for Histology-Based Nucleus Segmentation and Tumor Microenvironment Characterization Rong, Ruichen; Sheng, Hudanyun; Jin, Kevin W.; Wu, Fangjiang; Luo, Danni; Wen, Zhuoyu; Tang, Chen; Yang, Donghan M.; Jia, Liwei; Amgad, Mohamed; Cooper, Lee A. D.; Xie, Yang; Zhan, Xiaowei; Wang, Shidan; Xiao, Guanghua Share Save
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Global chromatin landscapes identify candidate noncoding modifiers of cardiac rhythm Bhattacharyya, Samadrita; Kollipara, Rahul K.; Orquera-Tornakian, Gabriela; Goetsch, Sean; Zhang, Minzhe; Perry, Cameron; Li, Boxun; Shelton, John M.; Bhakta, Minoti; Duan, Jialei; Xie, Yang; Xiao, Guanghua; Evers, Bret M.; Hon, Gary C.; Kittler, Ralf; Munshi, Nikhil V. Share Save
Features of tumor-microenvironment images predict targeted therapy survival benefit in patients with EGFR-mutant lung cancer Wang, Shidan; Rong, Ruichen; Yang, Donghan M.; Fujimoto, Junya; Bishop, Justin A.; Yan, Shirley; Cai, Ling; Behrens, Carmen; Berry, Lynne D.; Wilhelm, Clare; Aisner, Dara; Sholl, Lynette; Johnson, Bruce E.; Kwiatkowski, David J.; Wistuba, Ignacio I.; Bunn, Paul A.; Minna, John; Xiao, Guanghu; Kris, Mark G.; Xie, Yang Share Save
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