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Alan K. Jarmusch

national institute of environmental health sciences

42H-index
148Paper Count
3.4WCitation Count
Published Papers 68
Publication Date
Untargeted metabolomics reveals serum metabolites related to energy metabolism and inflammation associated with juvenile dermatomyositis
err2026-04-29
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errKaylie I. Kirkwood-Donelson; Dylan J. Johnson; Payam Noroozi Farhadi; Kakali Sarkar; Adam I. Schiffenbauer; Frederick W. Miller; Gregory Kudzin; Erin S. Baker; Jian-Liang Li; Lisa G. Rider; Alan K. Jarmusch
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NAPRT-mediated deamidated NAD biosynthesis enhances colon tissue resiliency and suppresses tumorigenesis
err2026-02-10
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errXiaoyue Wu; Jason G. Williams; Haoyang Liang; Artiom Gruzdev; Joshua Hartsell; Jack Shpargel; Rabina Mainali; Yi Fang; Ming Ji; Caroline Duval; Xin Xu; Zixin Zhang; Heather Winter; Peter Pediaditakis; Arun R. Pandiri; Marie E. Migaud; Alan K. Jarmusch; Huimin Yu; Xiaojing Liu; Jian-Liang Li; Xiaojiang Xu; Igor Shats; Xiaoling Li
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Evaluating Legacy and Emerging PFAS in Human Blood Collected from 2003 to 2021
err2026-01-21
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errGregory P. Kudzin; James N. Dodds; Kaylie I. Kirkwood-Donelson; Adam Schiffenbauer; Kakali Sarkar; Payam Noroozi Farhadi; Frederick W. Miller; Dylan Johnson; Jessie Chappel; Alan K. Jarmusch; Lisa G. Rider; Erin S. Baker
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Systemic and gut microbiome changes with metformin and liraglutide in youth-onset type 2 diabetes: the MIGHTY study
err2025-12-31
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PREAI
errGlaros, Sophia B.; Mishra, Sidharth P.; Jain, Shalini; Davis, Faith S.; Gabel, Scott A.; Mueller, Geoffrey A.; Jarmusch, Alan K.; Mabundo, Lilian; Courville, Amber B.; Walter, Mary F.; Walter, Peter J.; Overdahl, Kirsten E.; Yadav, Hariom; Chung, Stephanie T.
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A resource to empirically establish drug exposure records directly from untargeted metabolomics data
err2025-12-09
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errHaoqi Nina Zhao; Kine Eide Kvitne; Corinna Brungs; Siddharth Mohan; Vincent Charron-Lamoureux; Wout Bittremieux; Runbang Tang; Robin Schmid; Santosh Lamichhane; Shipei Xing; Yasin El Abiead; Mohammadsobhan S. Andalibi; Helena Mannochio-Russo; Madison Ambre; Nicole E. Avalon; MacKenzie Bryant; Lindsey A. Burnett; Andrés Mauricio Caraballo-Rodríguez; Martin Casas Maya; Loryn Chin; Lluís Corominas; Ronald J. Ellis; Donald Franklin; Sagan Girod; Paulo Wender P. Gomes; Lauren Hansen; Robert K. Heaton; Jennifer E. Iudicello; Alan K. Jarmusch; Lora Khatib; Scott Letendre; Sarolt Magyari; Daniel McDonald; Ipsita Mohanty; Andrés Cumsille; David J. Moore; Prajit Rajkumar; Dylan H. Ross; Harshada Sapre; Mohammad Reza Zare Shahneh; Ruben Gil-Solsona; Sydney P. Thomas; Caitlin Tribelhorn; Helena M. Tubb; Corinn Walker; Crystal X. Wang; Jasmine Zemlin; Simone Zuffa; David S. Wishart; Pablo Gago-Ferrero; Rima Kaddurah-Daouk; Mingxun Wang; Manuela Raffatellu; Karsten Zengler; Tomáš Pluskal; Libin Xu; Rob Knight; Shirley M. Tsunoda; Pieter C. Dorrestein
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A taxon-specific measurement of disruption in a multi-modal study of microbiomes and metabolomes reveals system-wide dysbiosis preceding HIV-1 infection
err2025-11-20
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errF. Fouladi; Y. Chen; S. Bera; A. K. Jarmusch; D. Van Tyne; F. J. Palella; J. B. Margolick; K. W. Chew; J. Sun; J. Martinson; C. R. Rinaldo; S. D. Peddada
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Neurobehavioral and metabolic effects of prenatal low-dose chlorpyrifos in C57BL/6J mice
err2025-08-08
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PREAI
errDalisa R. Kendricks; Jariatu Stallone; DaNashia S. Thomas; Leslie R. Aksu; Kaylie I. Kirkwood-Donelson; Alan K. Jarmusch; Christopher A. McPherson; Jesse D. Cushman
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Author Correction: A universal language for finding mass spectrometry data patterns
err2025-08-08
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errTito Damiani; Alan K. Jarmusch; Allegra T. Aron; Daniel Petras; Vanessa V. Phelan; Haoqi Nina Zhao; Wout Bittremieux; Deepa D. Acharya; Mohammed M. A. Ahmed; Anelize Bauermeister; Matthew J. Bertin; Paul D. Boudreau; Ricardo M. Borges; Benjamin P. Bowen; Christopher J. Brown; Fernanda O. Chagas; Kenneth D. Clevenger; Mario S. P. Correia; William J. Crandall; Max Crüsemann; Eoin Fahy; Oliver Fiehn; Neha Garg; William H. Gerwick; Jeffrey R. Gilbert; Daniel Globisch; Paulo Wender P. Gomes; Steffen Heuckeroth; C. Andrew James; Scott A. Jarmusch; Sarvar A. Kakhkhorov; Kyo Bin Kang; Nikolas Kessler; Roland D. Kersten; Hyunwoo Kim; Riley D. Kirk; Oliver Kohlbacher; Eftychia E. Kontou; Ken Liu; Itzel Lizama-Chamu; Gordon T. Luu; Tal Luzzatto Knaan; Helena Mannochio-Russo; Michael T. Marty; Yuki Matsuzawa; Andrew C. McAvoy; Laura-Isobel McCall; Osama G. Mohamed; Omri Nahor; Heiko Neuweger; Timo H. J. Niedermeyer; Kozo Nishida; Trent R. Northen; Kirsten E. Overdahl; Johannes Rainer; Raphael Reher; Elys Rodriguez; Timo T. Sachsenberg; Laura M. Sanchez; Robin Schmid; Cole Stevens; Shankar Subramaniam; Zhenyu Tian; Ashootosh Tripathi; Hiroshi Tsugawa; Justin J. J. van der Hooft; Andrea Vicini; Axel Walter; Tilmann Weber; Quanbo Xiong; Tao Xu; Tomáš Pluskal; Pieter C. Dorrestein; Mingxun Wang
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Multilaboratory Untargeted Mass Spectrometry Metabolomics Collaboration to Identify Bottlenecks and Comprehensively Annotate A Single Dataset
err2025-07-22
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errOAAI
errJoelle Houriet; Preston K. Manwill; Armando Alcázar Magaña; Victoria M. Anderson; Mehdi A. Beniddir; Samuel Bertrand; Jaewoo Choi; Trevor N. Clark; Leonard J. Foster; Maria Halabalaki; Alan K. Jarmusch; Niek F. de Jonge; Aswad Khadilkar; John B. MacMillan; Claudia S. Maier; Luke C. Marney; Guillaume Marti; Eleni V. Mikropoulou; Damien Olivier-Jimenez; Amélie Perez; Justin J. J. van der Hooft; Mitja M. Zdouc; Roger G. Linington; Nadja B. Cech
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Library Enabling Annotation of Botanical Natural Products (LEAFBot): An Open-Access Library of Mass Spectrometry Fragmentation Spectra for Plant Metabolites
err2025-04-18
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PREAI
errAnderson, Victoria M.; Ranaweera, Madhusha M.; Jarmusch, Alan K.; Shay, Ashley E.; Todd, Daniel A.; Cech, Nadja B.; Kellogg, Joshua J.
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Metabolic consequences of erastin-induced ferroptosis in human ovarian cancer cells: an untargeted metabolomics study
err2025-01-20
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errKirkwood-Donelson, Kaylie I.; Jarmusch, Alan K.; Bortner, Carl D.; Merrick, Bruce Alex; Sinha, Birandra K.
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GLIS3: A novel transcriptional regulator of mitochondrial functions and metabolic reprogramming in postnatal kidney and polycystic kidney disease
err2024-12-01
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errCollier, Justin B.; Kang, Hong Soon; Roh, Yun-Gil; Srivastava, Chitrangda; Grimm, Sara A.; Jarmusch, Alan K.; Jetten, Anton M.
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Multi-omics inhalation toxicity assessment of urban soil dusts contaminated by multiple legacy sources of lead (Pb)
err2024-12-01
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PREAI
errHaque, Ezazul; Adamcakova-Dodd, Andrea; Jing, Xuefang; Wang, Hui; Jarmusch, Alan K.; Thorne, Peter S.
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Prenatal exposure to the mineralocorticoid receptor antagonist spironolactone disrupts hippocampal area CA2 connectivity and alters behavior in mice
err2024-09-05
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errJones, Stephanie M.; Sleiman, Sarah Jo; McCann, Katharine E.; Jarmusch, Alan K.; Alexander, Georgia M.; Dudek, Serena M.
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Profiling whole-tissue metabolic reprogramming during cutaneous poxvirus infection and clearance
err2023-12-21
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errPei, Luxin; Overdahl, Kirsten E.; Shannon, John P.; Hornick, Katherine M.; Jarmusch, Alan K.; Hickman, Heather D.
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Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics
err2023-12-20
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errBittremieux, Wout; Avalon, Nicole E.; Thomas, Sydney P.; Kakhkhorov, Sarvar A.; Aksenov, Alexander A.; Gomes, Paulo Wender P.; Aceves, Christine M.; Caraballo-Rodriguez, Andres Mauricio; Gauglitz, Julia M.; Gerwick, William H.; Huan, Tao; Jarmusch, Alan K.; Kaddurah-Daouk, Rima F.; Kang, Kyo Bin; Kim, Hyun Woo; Kondic, Todor; Mannochio-Russo, Helena; Meehan, Michael J.; Melnik, Alexey V.; Nothias, Louis-Felix; O'Donovan, Claire; Panitchpakdi, Morgan; Petras, Daniel; Schmid, Robin; Schymanski, Emma L.; van der Hooft, Justin J. J.; Weldon, Kelly C.; Yang, Heejung; Xing, Shipei; Zemlin, Jasmine; Wang, Mingxun; Dorrestein, Pieter C.
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Pubertal Girls With Overweight/Obesity Have Higher Androgen Levels-Can Metabolomics Tell us Why?
err2023-11-18
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errOAAI
errCalvert, Madison E.; Molsberry, Samantha A.; Overdahl, Kirsten E.; Jarmusch, Alan K.; Shaw, Natalie D.
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Enhancing untargeted metabolomics using metadata-based source annotation
err2023-10-18
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errOAAI
errGauglitz, Julia M.; West, Kiana A.; Bittremieux, Wout; Williams, Candace L.; Weldon, Kelly C.; Panitchpakdi, Morgan; Di Ottavio, Francesca; Aceves, Christine M.; Brown, Elizabeth; Sikora, Nicole C.; Jarmusch, Alan K.; Martino, Cameron; Tripathi, Anupriya; Meehan, Michael J.; Dorrestein, Kathleen; Shaffer, Justin P.; Coras, Roxana; Vargas, Fernando; Goldasich, Lindsay DeRight; Schwartz, Tara; Bryant, MacKenzie; Humphrey, Gregory; Johnson, Abigail J.; Spengler, Katharina; Belda-Ferre, Pedro; Diaz, Edgar; McDonald, Daniel; Zhu, Qiyun; Elijah, Emmanuel O.; Wang, Mingxun; Marotz, Clarisse; Sprecher, Kate E.; Vargas-Robles, Daniela; Withrow, Dana; Ackermann, Gail; Herrera, Lourdes; Bradford, Barry J.; Marques, Lucas Maciel Mauriz; Amaral, Juliano Geraldo; Silva, Rodrigo Moreira; Veras, Flavio Protasio; Cunha, Thiago Mattar; Oliveira, Rene Donizeti Ribeiro; Louzada-Junior, Paulo; Mills, Robert H.; Piotrowski, Paulina K.; Servetas, Stephanie L.; Da Silva, Sandra M.; Jones, Christina M.; Lin, Nancy J.; Lippa, Katrice A.; Jackson, Scott A.; Daouk, Rima Kaddurah; Galasko, Douglas; Dulai, Parambir S.; Kalashnikova, Tatyana I.; Wittenberg, Curt; Terkeltaub, Robert; Doty, Megan M.; Kim, Jae H.; Rhee, Kyung E.; Beauchamp-Walters, Julia; Wright, Jr Kenneth P.; Dominguez-Bello, Maria Gloria; Manary, Mark; Oliveira, Michelli F.; Boland, Brigid S.; Lopes, Norberto Peporine; Guma, Monica; Swafford, Austin D.; Dutton, Rachel J.; Knight, Rob; Dorrestein, Pieter C.
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