Ricard Argelaguet - Publications, H-index & Citations

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Ricard Argelaguet

Babraham Institute

18H-index

45Paper Count

5.5KCitation Count

Published Papers 15

Publication Date

Combinatorial profiling of multiple histone modifications and transcriptome in single cells using scMTR-seq

Science Advances

IF12.5

2025-08-06

PREAI

Yang Wang; Jingyu Li; Andrew A. Malcolm; William Mansfield; Stephen J. Clark; Ricard Argelaguet; Laura Biggins; Richard J. Acton; Simon Andrews; Wolf Reik; Gavin Kelsey; Peter J. Rugg-Gunn

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Eomes directs the formation of spatially and functionally diverse extraembryonic hematovascular tissues

Developmental Cell

IF8.7

2025-06-24

OAAI

Bart Theeuwes; Luke T.G. Harland; Alexandra M. Bisia; Ita Costello; Mai-Linh N. Ton; Tim Lohoff; Stephen J. Clark; Ricard Argelaguet; Nicola K. Wilson; Wolf Reik; Elizabeth K. Bikoff; Elizabeth J. Robertson; Berthold Göttgens

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Tracking early mammalian organogenesis - prediction and validation of differentiation trajectories at whole organism scale

DEVELOPMENT

IF3.6

2024-01-31

OAAI

Imaz-Rosshandler, Ivan; Rode, Christina; Guibentif, Carolina; Harland, Luke T. G.; Ton, Mai-Linh N.; Dhapola, Parashar; Keitley, Daniel; Argelaguet, Ricard; Calero-Nieto, Fernando J.; Nichols, Jennifer; Marioni, John C.; de Bruijn, Marella F. T. R.; Gottgens, Berthold

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Gene regulatory network inference in the era of single-cell multi-omics

NATURE REVIEWS GENETICS

IF52

2023-06-26

PREAI

Badia-i-Mompel, Pau; Wessels, Lorna; Mueller-Dott, Sophia; Trimbour, Remi; Flores, Ricardo Ramirez O.; Argelaguet, Ricard; Saez-Rodriguez, Julio

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Single-cell multi-omics profiling links dynamic DNA methylation to cell fate decisions during mouse early organogenesis

GENOME BIOLOGY

IF9.4

2022-09-26

OAAI

Clark, Stephen J.; Argelaguet, Ricard; Lohoff, Tim; Krueger, Felix; Drage, Deborah; Gottgens, Berthold; Marioni, John C.; Nichols, Jennifer; Reik, Wolf

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8C-like cells capture the human zygotic genome activation program in vitro

CELL STEM CELL

IF20.4

2022-03-01

OAAI

Taubenschmid-Stowers, Jasmin; Rostovskaya, Maria; Santos, Fatima; Ljung, Sebastian; Argelaguet, Ricard; Krueger, Felix; Nichols, Jennifer; Reik, Wolf

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Identifying temporal and spatial patterns of variation from multimodal data using MEFISTO

NATURE METHODS

IF32.1

2022-01-13

OAAI

Velten, Britta; Braunger, Jana M.; Argelaguet, Ricard; Arnol, Damien; Wirbel, Jakob; Bredikhin, Danila; Zeller, Georg; Stegle, Oliver

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Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis

NATURE BIOTECHNOLOGY

IF41.7

2021-09-06

147

OAAI

Lohoff, T.; Ghazanfar, S.; Missarova, A.; Koulena, N.; Pierson, N.; Griffiths, J. A.; Bardot, E. S.; Eng, C. -H. L.; Tyser, R. C. V.; Argelaguet, R.; Guibentif, C.; Srinivas, S.; Briscoe, J.; Simons, B. D.; Hadjantonakis, A. -K.; Gottgens, B.; Reik, W.; Nichols, J.; Cai, L.; Marioni, J. C.

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Community-wide hackathons to identify central themes in single-cell multi-omics (vol 22, 220, 2021)

GENOME BIOLOGY

IF9.4

2021-08-25

OAAI

Cao, Kim-Anh Le; Abadi, Al J.; Davis-Marcisak, Emily F.; Hsu, Lauren; Arora, Arshi; Coullomb, Alexis; Deshpande, Atul; Feng, Yuzhou; Jeganathan, Pratheepa; Loth, Melanie; Meng, Chen; Mu, Wancen; Pancaldi, Vera; Sankaran, Kris; Righelli, Dario; Singh, Amrit; Sodicoff, Joshua S.; Stein-O'Brien, Genevieve L.; Subramanian, Ayshwarya; Welch, Joshua D.; You, Yue; Argelaguet, Ricard; Carey, Vincent J.; Dries, Ruben; Greene, Casey S.; Holmes, Susan; Love, Michael I.; Ritchie, Matthew E.; Yuan, Guo-Cheng; Culhane, Aedin C.; Fertig, Elana

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Computational principles and challenges in single-cell data integration

NATURE BIOTECHNOLOGY

IF41.7

2021-05-03

198

PREAI

Argelaguet, Ricard; Cuomo, Anna S. E.; Stegle, Oliver; Marioni, John C.

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Integrative Transkingdom Analysis of the Gut Microbiome in Antibiotic Perturbation and Critical Illness

MSYSTEMS

IF4.6

2021-04-27

OAAI

Haak, Bastiaan W.; Argelaguet, Ricard; Kinsella, Cormac M.; Kullberg, Robert F. J.; Lankelma, Jacqueline M.; Deijs, Martin; Klein, Michelle; Jebbink, Maarten F.; Hugenholtz, Floor; Kostidis, Sarantos; Giera, Martin; Hakvoort, Theodorus B. M.; de Jonge, Wouter J.; Schultz, Marcus J.; van Gool, Tom; van der Poll, Tom; de Vos, Willem M.; van der Hoek, Lia M.; Wiersinga, W. Joost

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scMET: Bayesian modeling of DNA methylation heterogeneity at single-cell resolution

GENOME BIOLOGY

IF9.4

2021-04-20

OAAI

Kapourani, Chantriolnt-Andreas; Argelaguet, Ricard; Sanguinetti, Guido; Vallejos, Catalina A.

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MOFA plus : a statistical framework for comprehensive integration of multi-modal single-cell data

GENOME BIOLOGY

IF9.4

2020-05-11

342

OAAI

Argelaguet, Ricard; Arnol, Damien; Bredikhin, Danila; Deloro, Yonatan; Velten, Britta; Marioni, John C.; Stegle, Oliver

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Multi-Omics Factor Analysis-a framework for unsupervised integration of multi-omics data sets

MOLECULAR SYSTEMS BIOLOGY

IF7.7

2018-06-20

623

OAAI

Argelaguet, Ricard; Velten, Britta; Arnol, Damien; Dietrich, Sascha; Zenz, Thorsten; Marioni, John C.; Buettner, Florian; Huber, Wolfgang; Stegle, Oliver

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scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells

NATURE COMMUNICATIONS

IF15.7

2018-02-22

478

OAAI

Clark, Stephen J.; Argelaguet, Ricard; Kapourani, Chantriolnt-Andreas; Stubbs, Thomas M.; Lee, Heather J.; Alda-Catalinas, Celia; Krueger, Felix; Sanguinetti, Guido; Kelsey, Gavin; Marioni, John C.; Stegle, Oliver; Reik, Wolf

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Research Directions