Adriana Salcedo - Publications, H-index & Citations

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Adriana Salcedo

illumina artificial intelligence laboratory

35H-index

109Paper Count

1.7WCitation Count

Published Papers 13

Publication Date

Predicting expression-altering promoter mutations with deep learning

Science

IF45.8

2025-05-29

PREAI

Kishore Jaganathan; Nicole Ersaro; Gherman Novakovsky; Yuchuan Wang; Terena James; Jeremy Schwartzentruber; Petko Fiziev; Irfahan Kassam; Fan Cao; Johann Hawe; Henry Cavanagh; Ashley Lim; Grace Png; Jeremy McRae; Abhimanyu Banerjee; Arvind Kumar; Jacob Ulirsch; Yan Zhang; Francois Aguet; Pierrick Wainschtein; Laksshman Sundaram; Adriana Salcedo; Sofia Kyriazopoulou Panagiotopoulou; Delasa Aghamirzaie; Evin Padhi; Ziming Weng; Shan Dong; Damian Smedley; Mark Caulfield; Anne O’Donnell-Luria; Heidi L. Rehm; Stephan J. Sanders; Anshul Kundaje; Stephen B. Montgomery; Mark T. Ross; Kyle Kai-How Farh

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The genomic and evolutionary landscapes of anaplastic thyroid carcinoma

CELL REPORTS

IF6.9

2024-03-01

OAAI

Zeng, Peter Y. F.; Prokopec, Stephenie D.; Lai, Stephen Y.; Pinto, Nicole; Chan-Seng-Yue, Michelle A.; Clifton-Bligh, Roderick; Williams, Michelle D.; Howlett, Christopher J.; Plantinga, Paul; Cecchini, Matthew J.; Lam, Alfred K.; Siddiqui, Iram; Wang, Jianxin; Sun, Ren X.; Watson, John D.; Korah, Reju; Carling, Tobias; Agrawal, Nishant; Cipriani, Nicole; Ball, Douglas; Nelkin, Barry; Rooper, Lisa M.; Bishop, Justin A.; Garnis, Cathie; Berean, Ken; Nicolson, Norman G.; Weinberger, Paul; Henderson, Ying C.; Lalansingh, Christopher M.; Tian, Mao; Yamaguchi, Takafumi N.; Livingstone, Julie; Salcedo, Adriana; Patel, Krupal; Vizeacoumar, Frederick; Datti, Alessandro; Xi, Liu; Nikiforov, Yuri E.; Smallridge, Robert; Copland, John A.; Marlow, Laura A.; Hyrcza, Martin D.; Delbridge, Leigh; Sidhu, Stan; Sywak, Mark; Robinson, Bruce; Fung, Kevin; Ghasemi, Farhad; Kwan, Keith; MacNeil, S. Danielle; Mendez, Adrian; Palma, David A.; Khan, Mohammed I.; Shaikh, Mushfiq; Ruicci, Kara M.; Wehrli, Bret; Winquist, Eric; Yoo, John; Mymryk, Joe S.; Rocco, James W.; Wheeler, David; Scherer, Steve; Giordano, Thomas J.; Barrett, John W.; Faquin, William C.; Gill, Anthony J.; Clayman, Gary; Boutros, Paul C.; Nichols, Anthony C.

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Determining the Impact of Spatial Heterogeneity on Genomic Prognostic Biomarkers for Localized Prostate Cancer

EUROPEAN UROLOGY ONCOLOGY

IF9.3

2022-06-01

PREAI

Brastianos, Harry C.; Murgic, Jure; Salcedo, Adriana; Chua, Melvin L. K.; Meng, Alice; Fraser, Michael; Brundage, Michael; Fleshner, Neil E.; van der Kwast, Theodorus; Bristow, Robert G.; Boutros, Paul C.; Berlin, Alejandro

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Transcriptional perturbation of protein arginine methyltransferase-5 exhibits MTAP-selective oncosuppression

SCIENTIFIC REPORTS

IF3.9

2021-04-01

OAAI

Busacca, Sara; Zhang, Qi; Sharkey, Annabel; Dawson, Alan G.; Moore, David A.; Waller, David A.; Nakas, Apostolos; Jones, Carolyn; Cain, Kelvin; Luo, Jin-li; Salcedo, Adriana; Salaroglio, Iris Chiara; Riganti, Chiara; Le Quesne, John; John, Tom; Boutros, Paul C.; Zhang, Shu-Dong; Fennell, Dean A.

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Precision Radiotherapy: Reduction in Radiation for Oropharyngeal Cancer in the 30 ROC Trial

JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE

IF7.2

2021-01-12

103

OAAI

Riaz, Nadeem; Sherman, Eric; Pei, Xin; Schoder, Heiko; Grkovski, Milan; Paudyal, Ramesh; Katabi, Nora; Selenica, Pier; Yamaguchi, Takafumi N.; Ma, Daniel; Lee, Simon K.; Shah, Rachna; Kumar, Rahul; Kuo, Fengshen; Ratnakumar, Abhirami; Aleynick, Nathan; Brown, David; Zhang, Zhigang; Hatzoglou, Vaios; Liu, Lydia Y.; Salcedo, Adriana; Tsai, Chiaojung J.; McBride, Sean; Morris, Luc G. T.; Boyle, Jay; Singh, Bhuvanesh; Higginson, Daniel S.; Damerla, Rama R.; Paula, Arnaud da Cruz; Price, Katharine; Moore, Eric J.; Garcia, Joaquin J.; Foote, Robert; Ho, Alan; Wong, Richard J.; Chan, Timothy A.; Powell, Simon N.; Boutros, Paul C.; Humm, John L.; Shukla-Dave, Amita; Pfister, David; Reis-Filho, Jorge S.; Lee, Nancy

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A practical guide to cancer subclonal reconstruction from DNA sequencing

NATURE METHODS

IF32.1

2021-01-04

106

OAAI

Tarabichi, Maxime; Salcedo, Adriana; Deshwar, Amit G.; Leathlobhair, Maire Ni; Wintersinger, Jeff; Wedge, David C.; Van Loo, Peter; Morris, Quaid D.; Boutros, Paul C.

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Quantifying the influence of mutation detection on tumour subclonal reconstruction

NATURE COMMUNICATIONS

IF15.7

2020-12-07

OAAI

Liu, Lydia Y.; Bhandari, Vinayak; Salcedo, Adriana; Espiritu, Shadrielle M. G.; Morris, Quaid D.; Kislinger, Thomas; Boutros, Paul C.

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A community effort to create standards for evaluating tumor subclonal reconstruction

NATURE BIOTECHNOLOGY

IF41.7

2020-01-09

OAAI

Salcedo, Adriana; Tarabichi, Maxime; Espiritu, Shadrielle Melijah G.; Deshwar, Amit G.; David, Matei; Wilson, Nathan M.; Dentro, Stefan; Wintersinger, Jeff A.; Liu, Lydia Y.; Ko, Minjeong; Sivanandan, Srinivasan; Zhang, Hongjiu; Zhu, Kaiyi; Ou Yang, Tai-Hsien; Chilton, John M.; Buchanan, Alex; Lalansingh, Christopher M.; P'ng, Christine; Anghel, Catalina V.; Umar, Imaad; Lo, Bryan; Zou, William; Simpson, Jared T.; Stuart, Joshua M.; Anastassiou, Dimitris; Guan, Yuanfang; Ewing, Adam D.; Ellrott, Kyle; Wedge, David C.; Morris, Quaid; Van Loo, Peter; Boutros, Paul C.; Jha, Alokkumar; Huang, Tanxiao; Yang, Tsun-Po; Peifer, Martin; Sahinalp, Cenk; Malikic, Salem; Vazquez-Garcia, Ignacio; Mustonen, Ville; Yang, Hsih-Te; Lee, Ken-Ray; Ji, Yuan; Sengupta, Subhajit; Rudewicz, Justine; Nikolski, Macha; Schaeverbeke, Quentin; Yuan, Ke; Markowetz, Florian; Macintyre, Geoff; Cmero, Marek; Chaudhary, Belal; Leshchiner, Ignaty; Livitz, Dimitri; Getz, Gad; Loher, Phillipe; Yu, Kaixian; Wang, Wenyi; Zhu, Hongtu

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Oncogenes and tumour-suppressors drive differential retinoblastoma evolution

CANCER RESEARCH

IF16.6

2019-07-01

PREAI

Salcedo, Adriana; Watson, John D.; Racher, Hilary; Rushlow, Diane; Espiritu, Shadrielle Melijah G.; Sendorek, Doroto H.; Prokopec, Stephenie D.; Matveski, Donco; Yousif, Fouad; Livingstone, Julie; Gallie, Brenda L.; Boutros, Paul C.

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Parental legacy, demography, and admixture influenced the evolution of the two subgenomes of the tetraploid Capsella bursa-pastoris (Brassicaceae)

PLOS GENETICS

IF3.7

2019-02-15

OAAI

Kryvokhyzha, Dmytro; Salcedo, Adriana; Eriksson, Mimmi C.; Duan, Tianlin; Tawari, Nilesh; Chen, Jun; Guerrina, Maria; Kreiner, Julia M.; Kent, Tyler V.; Lagercrantz, Ulf; Stinchcombe, John R.; Glemin, Sylvain; Wright, Stephen I.; Lascoux, Martin

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Genomic Classifier for Guiding Treatment of Intermediate-Risk Prostate Cancers to Dose-Escalated Image Guided Radiation Therapy Without Hormone Therapy

INTERNATIONAL JOURNAL OF RADIATION ONCOLOGY BIOLOGY PHYSICS

IF6.5

2019-01-01

OAAI

Berlin, Alejandro; Murgic, Jure; Hosni, Ali; Pintilie, Melania; Salcedo, Adriana; Fraser, Michael; Kamel-Reid, Suzanne; Zhang, Jingbin; Wang, Qiqi; Ch'ng, Carolyn; Deheshi, Samineh; Davicioni, Elai; van der Kwast, Theodorus; Boutros, Paul C.; Bristow, Robert G.; Chua, Melvin L. K.

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Genomic architecture of prostate cancer at recurrence following radiotherapy

CANCER RESEARCH

IF16.6

2017-07-01

PREAI

Chua, Melvin L. K.; Holgersen, Erle; Sabelnykova, Veronica; Salcedo, Adriana; Meng, Alice; Fraser, Michael; van der Kwast, Theodorus; Boutros, Paul C.; Bristow, Robert G.

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Hybrid origins and the earliest stages of diploidization in the highly successful recent polyploid Capsella bursa-pastoris

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2015-02-17

118

OAAI

Douglas, Gavin M.; Gos, Gesseca; Steige, Kim A.; Salcedo, Adriana; Holm, Karl; Josephs, Emily B.; Arunkumar, Ramesh; Agren, J. Arvid; Hazzouri, Khaled M.; Wang, Wei; Platts, Adrian E.; Williamson, Robert J.; Neuffer, Barbara; Lascoux, Martin; Slotte, Tanja; Wright, Stephen I.

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Research Directions