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Douglas P. Shepherd

Arizona State University

20H-index
125Paper Count
5.2KCitation Count
Published Papers 31
Publication Date
Fourier synthesis optical diffraction tomography for kilohertz rate volumetric imaging
err2025-08-13
err0
errOAAI
errPeter T. Brown; Nikta Jabbarzadeh; Luis Meneses; Kaia Swanson; Aidan Pintuff; Ekaterina Monakhova; Rory Kruithoff; Navish Wadhwa; Domenico F. Galati; Douglas P. Shepherd
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Mamba time series forecasting with uncertainty quantification
err2025-07-22
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PREAI
errPedro Pessoa; Paul Campitelli; Douglas P Shepherd; S Banu Ozkan; Steve Pressé
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Model based optimization for refractive index mismatched light sheet imaging
err2024-09-25
err0
errOAAI
errSheppard, Steven J.; Brown, Peter T.; Shepherd, Douglas P.
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Navigate: an open-source platform for smart light-sheet microscopy
err2024-09-11
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PREAI
errMarin, Zach; Wang, Xiaoding; Collison, Dax W.; McFadden, Conor; Lin, Jinlong; Borges, Hazel M.; Chen, Bingying; Mehra, Dushyant; Shen, Qionghua; Galecki, Seweryn; Daetwyler, Stephan; Sheppard, Steven J.; Thien, Phu; Porter, Baylee A.; Conzen, Suzanne D.; Shepherd, Douglas P.; Fiolka, Reto; Dean, Kevin M.
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An integrated cell atlas of the lung in health and disease
err2023-06-08
err163
errOAAI
errSikkema, Lisa; Ramirez-Suastegui, Ciro; Strobl, Daniel C.; Gillett, Tessa E.; Zappia, Luke; Madissoon, Elo; Markov, Nikolay S.; Zaragosi, Laure-Emmanuelle; Ji, Yuge; Ansari, Meshal; Arguel, Marie-Jeanne; Apperloo, Leonie; Banchero, Martin; Becavin, Christophe; Berg, Marijn; Chichelnitskiy, Evgeny; Chung, Mei-i; Collin, Antoine; Gay, Aurore C. A.; Gote-Schniering, Janine; Kashani, Baharak Hooshiar; Inecik, Kemal; Jain, Manu; Kapellos, Theodore S.; Kole, Tessa M.; Leroy, Sylvie; Mayr, Christoph H.; Oliver, Amanda J.; von Papen, Michael; Peter, Lance; Taylor, Chase J.; Walzthoeni, Thomas; Xu, Chuan; Bui, Linh T.; De Donno, Carlo; Dony, Leander; Faiz, Alen; Guo, Minzhe; Gutierrez, Austin J.; Heumos, Lukas; Huang, Ni; Ibarra, Ignacio L.; Jackson, Nathan D.; Murthy, Preetish Kadur Lakshminarasimha; Lotfollahi, Mohammad; Tabib, Tracy; Talavera-Lopez, Carlos; Travaglini, Kyle J.; Wilbrey-Clark, Anna; Worlock, Kaylee B.; Yoshida, Masahiro; van den Berge, Maarten; Bosse, Yohan; Desai, Tushar J.; Eickelberg, Oliver; Kaminski, Naftali; Krasnow, Mark A.; Lafyatis, Robert; Nikolic, Marko Z.; Powell, Joseph E.; Rajagopal, Jayaraj; Rojas, Mauricio; Rozenblatt-Rosen, Orit; Seibold, Max A.; Sheppard, Dean; Shepherd, Douglas P.; Sin, Don D.; Timens, Wim; Tsankov, Alexander M.; Whitsett, Jeffrey; Xu, Yan; Banovich, Nicholas E.; Barbry, Pascal; Duong, Thu Elizabeth; Falk, Christine S.; Meyer, Kerstin B.; Kropski, Jonathan A.; Pe'er, Dana; Schiller, Herbert B.; Tata, Purushothama Rao; Schultze, Joachim L.; Teichmann, Sara A.; Misharin, Alexander, V; Nawijn, Martijn C.; Luecken, Malte D.; Theis, Fabian J.; Chen, Yuexin; Hagood, James S.; Agami, Ahmed; Horvath, Peter; Lundeberg, Joakim; Marquette, Charles-Hugo; Pryhuber, Gloria; Samakovlis, Chistos; Sun, Xin; Ware, Lorraine B.; Zhang, Kun
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Decoding the hydrodynamic properties of microscale helical propellers from Brownian fluctuations
err2023-05-26
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errOAAI
errDjutanta, Franky; Brown, Peter T.; Nainggolan, Bonfilio; Coullomb, Alexis; Radhakrishnan, Sritharini; Sentosa, Jason; Yurke, Bernard; Hariadi, Rizal F.; Shepherd, Douglas P.
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Gene expression model inference from snapshot RNA data using Bayesian non-parametrics
err2023-01-19
err8
errOAAI
errKilic, Zeliha; Schweiger, Max; Moyer, Camille; Shepherd, Douglas; Presse, Steve
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Resolution doubling in light-sheet microscopy via oblique plane structured illumination
err2022-10-24
err31
errOAAI
errChen, Bingying; Chang, Bo-Jui; Roudot, Philippe; Zhou, Felix; Sapoznik, Etai; Marlar-Pavey, Madeleine; Hayes, James B.; Brown, Peter T.; Zeng, Chih-Wei; Lambert, Talley; Friedman, Jonathan R.; Zhang, Chun-Li; Burnette, Dylan T.; Shepherd, Douglas P.; Dean, Kevin M.; Fiolka, Reto P.
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Computational Proposal for Tracking Multiple Molecules in a Multifocus Confocal Setup
err2022-07-07
err3
errOAAI
errJazani, Sina; Xu, Lance W. Q.; Sgouralis, Ioannis; Shepherd, Douglas P.; Presse, Steve
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Tutorial: practical considerations for tissue clearing and imaging
err2021-05-21
err55
errOAAI
errWeiss, Kurt R.; Voigt, Fabian F.; Shepherd, Douglas P.; Huisken, Jan
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Pycro-Manager: open-source software for customized and reproducible microscope control
err2021-03-05
err47
errOAAI
errPinkard, Henry; Stuurman, Nico; Ivanov, Ivan E.; Anthony, Nicholas M.; Wei Ouyang; Li, Bin; Yang, Bin; Tsuchida, Mark A.; Chhun, Bryant; Zhang, Grace; Mei, Ryan; Anderson, Michael; Shepherd, Douglas P.; Hunt-Isaak, Ian; Dunn, Raymond L.; Jahr, Wiebke; SaulKato; Royer, Loic A.; Thiagarajah, Jay R.; Eliceiri, Kevin W.; Lundberg, Emma; Mehta, Shalin B.; Waller, Laura
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A versatile oblique plane microscope for large-scale and high-resolution imaging of subcellular dynamics
err2020-11-12
err112
errOAAI
errSapoznik, Etai; Chang, Bo-Jui; Huh, Jaewon; Ju, Robert J.; Azarova, Evgenia, V; Pohlkamp, Theresa; Welf, Erik S.; Broadbent, David; Carisey, Alexandre F.; Stehbens, Samantha J.; Lee, Kyung-Min; Marin, Arnaldo; Hanker, Ariella B.; Schmidt, Jens C.; Arteaga, Carlos L.; Bin Yang; Kobayashi, Yoshihiko; Tata, Purushothama Rao; Kruithoff, Rory; Doubrovinski, Konstantin; Shepherd, Douglas P.; Millett-Sikking, Alfred; York, Andrew G.; Dean, Kevin M.; Fiolka, Reto P.
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rhIGF-1/BP3 Preserves Lung Growth and Prevents Pulmonary Hypertension in Experimental Bronchopulmonary Dysplasia
err2020-05-01
err46
errOAAI
errSeedorf, Gregory; Kim, Christina; Wallace, Bradley; Mandell, Erica W.; Nowlin, Taylor; Shepherd, Douglas; Abman, Steven H.
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Correlated Single-Molecule Reaction Imaging and Photocurrent Measurements Reveal Underlying Rate Processes in Photoelectrochemical Water Splitting
err2019-03-22
err12
PREAI
errSambur, Justin B.; Shepherd, Douglas P.; Hesari, Mahdi; Van Erdewyk, Michael; Choudhary, Eric; Chen, Peng
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In Vivo Cell Tracking and Cleared Tissue Imaging with Extended Field of View Selective Plane Illumination Microscopy
err2019-02-01
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errOAAI
errSaunders, Leonardo A.; Pace, Devin; Gentile, Arianna; Stich, Dominik; Ribera, Angeles B.; Shepherd, Douglas P.
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Heritability and Stochasticity in Primary Endothelial Cell Signaling
err2019-02-01
err0
errOAAI
errKim, Christina; Seedorf, Gregory; Abman, Steven; Shepherd, Douglas P.
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Mild myelin disruption elicits early alteration in behavior and proliferation in the subventricular zone
err2018-02-13
err38
errOAAI
errGould, Elizabeth A.; Busquet, Nicolas; Shepherd, Douglas; Dietz, Robert M.; Herson, Paco S.; de Souza, Fabio M. Simoes; Li, Anan; George, Nicholas M.; Restrepo, Diego; Macklin, Wendy B.
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Quantifying Molecular Disease Mechanisms in Intact Tissue using Automatic and Adaptive Refractive Index Compensation for Light-Sheet Fluorescence Microscopy
err2018-02-01
err0
errOAAI
errShepherd, Douglas; Ryan, Duncan; Gould, Elizabeth; Singh, Jasmine; Nowlin, Taylor; Seedorf, Gregory; Masihzadeh, Omid; Abman, Steven; Vijayaraghavan, Sukumar; Macklin, Wendy; Restrepo, Diego
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Automatic and adaptive heterogeneous refractive index compensation for light-sheet microscopy
err2017-09-20
err27
errOAAI
errRyan, Duncan P.; Gould, Elizabeth A.; Seedorf, Gregory J.; Masihzadeh, Omid; Abman, Steven H.; Vijayaraghavan, Sukumar; Macklin, Wendy B.; Restrepo, Diego; Shepherd, Douglas P.
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