Yue Bi - Publications, H-index & Citations

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Yue Bi

monash university

12H-index

38Paper Count

537Citation Count

Published Papers 15

Publication Date

A geometric deep learning framework for genome-wide prediction of enzyme turnover number

Genome Biology

IF9.4

2026-02-11

PREAI

Pan, Tong; Cui, Xin; Koh, Huan Yee; Bi, Yue; Wang, Xiaoyu; Zhang, Yumeng; Hu, Shantong; Webb, Geoffrey I.; Kurgan, Lukasz; Zhang, Guimin; Song, Jiangning

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A scalable equivariant graph network framework for precise protein function prediction

Genome Biology

IF9.4

2025-11-29

OAAI

Zixu Ran; Xudong Guo; Tong Pan; Yue Bi; Yi Hao; Heyun Sun; Jiangning Song; Fuyi Li

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Super-enhancer DNA methylation in cancer: the mechanism of action and therapeutic directions

Frontiers in Oncology

IF3.3

2025-10-01

OAAI

Yue Bi; Kang Zou; Ke Wang

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SCREEN: A Graph-based Contrastive Learning Tool to Infer Catalytic Residues and Assess Enzyme Mutations

GENOMICS PROTEOMICS & BIOINFORMATICS

IF7.9

2024-12-26

OAAI

Pan, Tong; Bi, Yue; Wang, Xiaoyu; Zhang, Ying; Webb, Geoffrey, I; Song, Jiangning

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A two-task predictor for discovering phase separation proteins and their undergoing mechanism

BRIEFINGS IN BIOINFORMATICS

IF7.7

2024-10-21

OAAI

Zhou, Yetong; Zhou, Shengming; Bi, Yue; Zou, Quan; Jia, Cangzhi

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Seizure Detection of West Syndrome Based on Hybrid Optimization of Entropies With Multisensor EEG Data

IEEE SENSORS JOURNAL

IF4.5

2024-10-15

PREAI

Bi, Yue; Wu, Duanpo; Xu, Zhaoyang; Vidal, Pierre-Paul; Wang, Danping; Lin, Yi; Jiang, Tiejia; Cao, Jiuwen; Xu, Yuansheng

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MSlocPRED: deep transfer learning-based identification of multi-label mRNA subcellular localization

BRIEFINGS IN BIOINFORMATICS

IF7.7

2024-10-14

OAAI

Zuo, Yun; Zhang, Bangyi; He, Wenying; Bi, Yue; Liu, Xiangrong; Zeng, Xiangxiang; Deng, Zhaohong

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scDFN: enhancing single-cell RNA-seq clustering with deep fusion networks

BRIEFINGS IN BIOINFORMATICS

IF7.7

2024-10-05

OAAI

Liu, Tianxiang; Jia, Cangzhi; Bi, Yue; Guo, Xudong; Zou, Quan; Li, Fuyi

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Advancing microRNA target site prediction with transformer and base-pairing patterns

NUCLEIC ACIDS RESEARCH

IF13.1

2024-09-13

OAAI

Bi, Yue; Li, Fuyi; Wang, Cong; Pan, Tong; Davidovich, Chen; Webb, Geoffrey, I; Song, Jiangning

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Glypred: Lysine Glycation Site Prediction via CCU-LightGBM-BiLSTM Framework with Multi-Head Attention Mechanism

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2024-08-09

PREAI

Zuo, Yun; Zhang, Bangyi; Dong, Yinkang; He, Wenying; Bi, Yue; Liu, Xiangrong; Zeng, Xiangxiang; Deng, Zhaohong

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Digerati-A multipath parallel hybrid deep learning framework for the identification of mycobacterial PE/PPE proteins

COMPUTERS IN BIOLOGY AND MEDICINE

IF6.3

2023-09-01

PREAI

Li, Fuyi; Guo, Xudong; Bi, Yue; Jia, Runchang; Pitt, Miranda E.; Pan, Shirui; Li, Shuqin; Gasser, Robin B.; Coin, Lachlan JM.; Song, Jiangning

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ATTIC is an integrated approach for predicting A-to-I RNA editing sites in three species

BRIEFINGS IN BIOINFORMATICS

IF7.7

2023-05-06

OAAI

Chen, Ruyi; Li, Fuyi; Guo, Xudong; Bi, Yue; Li, Chen; Pan, Shirui; Coin, Lachlan J. M.; Song, Jiangning

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Clarion is a multi-label problem transformation method for identifying mRNA subcellular localizations

BRIEFINGS IN BIOINFORMATICS

IF7.7

2022-11-05

OAAI

Bi, Yue; Li, Fuyi; Guo, Xudong; Wang, Zhikang; Pan, Tong; Guo, Yuming; Webb, Geoffrey, I; Yao, Jianhua; Jia, Cangzhi; Song, Jiangning

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An Interpretable Prediction Model for Identifying N7-Methylguanosine Sites Based on XGBoost and SHAP

MOLECULAR THERAPY-NUCLEIC ACIDS

IF0

2020-12-01

118

OAAI

Bi, Yue; Xiang, Dongxu; Ge, Zongyuan; Li, Fuyi; Jia, Cangzhi; Song, Jiangning

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EnsemPseU: Identifying Pseudouridine Sites With an Ensemble Approach

IEEE ACCESS

IF3.6

2020-01-01

OAAI

Bi, Yue; Jin, Dong; Jia, Cangzhi

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Research Directions