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Typhaine Paysan‐Lafosse

european bioinformatics institute (embl-ebi)

13H-index
20Paper Count
9.6KCitation Count
Published Papers 11
Publication Date
Exploring the Terra incognita of AI-based domain classifications
err2025-11-25
err0
PREAI
errJimin Pei; Antonina Andreeva; Tiago Grego; Sara Chuguransky; Beatriz Lázaro Pinto; Nicole Morvelli Flores; Typhaine Paysan-Lafosse; Richard Dustin Schaeffer; Alex Bateman; Qian Cong; Nick V. Grishin
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The Pfam protein families database: embracing AI/ML
err2024-11-14
err2
errOAAI
errPaysan-Lafosse, Typhaine; Andreeva, Antonina; Blum, Matthias; Chuguransky, Sara Rocio; Grego, Tiago; Pinto, Beatriz Lazaro; Salazar, Gustavo A.; Bileschi, Maxwell L.; Llinares-Lopez, Felipe; Meng-Papaxanthos, Laetitia; Colwell, Lucy J.; Grishin, Nick, V; Schaeffer, R. Dustin; Clementel, Damiano; Tosatto, Silvio C. E.; Sonhammer, Erik; Wood, Valerie; Bateman, Alex
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InterPro in 2022
err2022-11-09
err1.1K
errOAAI
errPaysan-Lafosse, Typhaine; Blum, Matthias; Chuguransky, Sara; Grego, Tiago; Pinto, Beatriz Lazaro; Salazar, Gustavo A.; Bileschi, Maxwell L.; Bork, Peer; Bridge, Alan; Colwell, Lucy; Gough, Julian; Haft, Daniel H.; Letunic, Ivica; Marchler-Bauer, Aron; Mi, Huaiyu; Natale, Darren A.; Orengo, Christine A.; Pandurangan, Arun P.; Rivoire, Catherine; Sigrist, Christian J. A.; Sillitoe, Ian; Thanki, Narmada; Thomas, Paul D.; Tosatto, Silvio C. E.; Wu, Cathy H.; Bateman, Alex
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The InterPro protein families and domains database: 20 years on
err2020-11-06
err1.4K
errOAAI
errBlum, Matthias; Chang, Hsin-Yu; Chuguransky, Sara; Grego, Tiago; Kandasaamy, Swaathi; Mitchell, Alex; Nuka, Gift; Paysan-Lafosse, Typhaine; Qureshi, Matloob; Raj, Shriya; Richardson, Lorna; Salazar, Gustavo A.; Williams, Lowri; Bork, Peer; Bridge, Alan; Gough, Julian; Haft, Daniel H.; Letunic, Ivica; Marchler-Bauer, Aron; Mi, Huaiyu; Natale, Darren A.; Necci, Marco; Orengo, Christine A.; Pandurangan, Arun P.; Rivoire, Catherine; Sigrist, Christian J. A.; Sillitoe, Ian; Thanki, Narmada; Thomas, Paul D.; Tosatto, Silvio C. E.; Wu, Cathy H.; Bateman, Alex; Finn, Robert D.
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Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation
err2019-11-16
err10
errOAAI
errSillitoe, Ian; Andreeva, Antonina; Blundell, Tom L.; Buchan, Daniel W. A.; Finn, Robert; Gough, Julian; Jones, David; Kelley, Lawrence A.; Paysan-Lafosse, Typhaine; Lam, Su Datt; Murzin, Alexey G.; Pandurangan, Arun Prasad; Salazar, Gustavo A.; Skwark, Marcin J.; Sternberg, Michael J. E.; Velankar, Sameer; Orengo, Christine
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PDBe: improved findability of macromolecular structure data in the PDB
err2019-11-06
err79
errOAAI
errArmstrong, David R.; Berrisford, John M.; Conroy, Matthew J.; Gutmanas, Aleksandras; Anyango, Stephen; Choudhary, Preeti; Clark, Alice R.; Dana, Jose M.; Deshpande, Mandar; Dunlop, Roisin; Gane, Paul; Gaborova, Romana; Gupta, Deepti; Haslam, Pauline; Koca, Jaroslav; Mak, Lora; Mir, Saqib; Mukhopadhyay, Abhik; Nadzirin, Nurul; Nair, Sreenath; Paysan-Lafosse, Typhaine; Pravda, Lukas; Sehnal, David; Salih, Osman; Smart, Oliver; Tolchard, James; Varadi, Mihaly; Svobodova-Varekova, Radka; Zaki, Hossam; Kleywegt, Gerard J.; Velankar, Sameer
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PDBe-KB: a community-driven resource for structural and functional annotations
err2019-10-04
err75
errOAAI
errVaradi, Mihaly; Bcrrisford, John; Deshpande, Mandar; Nair, Sreenath S.; Gutmanas, Aleksandras; Armstrong, David; Pravda, Lukas; Al-Lazikani, Bissan; Anyango, Stephen; Barton, Geoffrey J.; Berka, Karel; Blundell, Tom; Borkakoti, Neera; Dana, Jose; Das, Sayoni; Dey, Sucharita; Di Micco, Patrizio; Fraternali, Franca; Gibson, Toby; Helmer-Citterich, Manuela; Hoksza, David; Huang, Liang-Chin; Jain, Rishabh; Jubb, Harry; Kannas, Christos; Kannan, Natarajan; Koca, Jaroslav; Krivak, Radoslav; Kumar, Manjeet; Levy, Emmanuel D.; Madeira, F.; Madhusudhan, M. S.; Martell, Henry J.; MacGowan, Stuart; McGreig, Jake E.; Mir, Saqib; Mukhopadhyay, Abhik; Parca, Luca; Paysan-Lafosse, Typhaine; Radusky, Leandro; Ribeiro, Antonio; Serrano, Luis; Sillitoe, Ian; Singh, Gulzar; Skoda, Petr; Svobodova, Radka; Tyzack, Jonathan; Valencia, Alfonso; Fernandez, Eloy Villasclaras; Vranken, Wim; Wass, Mark; Thornton, Janet; Sternberg, Michael; Orengo, Christine; Velankar, Sameer
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InterPro in 2019: improving coverage, classification and access to protein sequence annotations
err2018-11-06
err1.1K
errOAAI
errMitchell, Alex L.; Attwood, Teresa K.; Babbitt, Patricia C.; Blum, Matthias; Bork, Peer; Bridge, Alan; Brown, Shoshana D.; Chang, Hsin-Yu; El-Gebali, Sara; Fraser, Matthew I.; Gough, Julian; Haft, David R.; Huang, Hongzhan; Letunic, Ivica; Lopez, Rodrigo; Luciani, Aurelien; Madeira, Fabio; Marchler-Bauer, Aron; Mi, Huaiyu; Natale, Darren A.; Necci, Marco; Nuka, Gift; Orengo, Christine; Pandurangan, Arun P.; Paysan-Lafosse, Typhaine; Pesseat, Sebastien; Potter, Simon C.; Qureshi, Matloob A.; Rawlings, Neil D.; Redaschi, Nicole; Richardson, Lorna J.; Rivoire, Catherine; Salazar, Gustavo A.; Sangrador-Vegas, Amaia; Sigrist, Christian J. A.; Sillitoe, Ian; Sutton, Granger G.; Thanki, Narmada; Thomas, Paul D.; Tosatto, Silvio C. E.; Yong, Siew-Yit; Finn, Robert D.
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Protein Data Bank: the single global archive for 3D macromolecular structure data
err2018-10-24
err682
errOAAI
errBurley, Stephen K.; Berman, Helen M.; Bhikadiya, Charmi; Bi, Chunxiao; Chen, Li; Di Costanzo, Luigi; Christie, Cole; Duarte, Jose M.; Dutta, Shuchismita; Feng, Zukang; Ghosh, Sutapa; Goodsell, David S.; Green, Rachel Kramer; Guranovic, Vladimir; Guzenko, Dmytro; Hudson, Brian P.; Liang, Yuhe; Lowe, Robert; Peisach, Ezra; Periskova, Irina; Randle, Chris; Rose, Alexander; Sekharan, Monica; Shao, Chenghua; Tao, Yi-Ping; Valasatava, Yana; Voigt, Maria; Westbrook, John; Young, Jasmine; Zardecki, Christine; Zhuravleva, Marina; Kurisu, Genji; Nakamura, Haruki; Kengaku, Yumiko; Cho, Hasumi; Sato, Junko; Kim, Ju Yaen; Ikegawa, Yasuyo; Nakagawa, Atsushi; Yamashita, Reiko; Kudou, Takahiro; Bekker, Gert-Jan; Suzuki, Hirofumi; Iwata, Takeshi; Yokochi, Masashi; Kobayashi, Naohiro; Fujiwara, Toshimichi; Velankar, Sameer; Kleywegt, Gerard J.; Anyango, Stephen; Armstrong, David R.; Berrisford, John M.; Conroy, Matthew J.; Dana, Jose M.; Deshpande, Mandar; Gane, Paul; Gaborova, Romana; Gupta, Deepti; Gutmanas, Aleksandras; Koca, Jaroslav; Mak, Lora; Mir, Saqib; Mukhopadhyay, Abhik; Nadzirin, Nurul; Nair, Sreenath; Patwardhan, Ardan; Paysan-Lafosse, Typhaine; Pravda, Lukas; Salih, Osman; Sehnal, David; Varadi, Mihaly; Varekova, Radka; Markley, John L.; Hoch, Jeffrey C.; Romero, Pedro R.; Baskaran, Kumaran; Maziuk, Dimitri; Ulrich, Eldon L.; Wedell, Jonathan R.; Yao, Hongyang; Livny, Miron; Ioannidis, Yannis E.
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PDBe: towards reusable data delivery infrastructure at protein data bank in Europe
err2017-11-06
err69
errOAAI
errMir, Saqib; Alhroub, Younes; Anyango, Stephen; Armstrong, David R.; Berrisford, John M.; Clark, Alice R.; Conroy, Matthew J.; Dana, Jose M.; Deshpande, Mandar; Gupta, Deepti; Gutmanas, Aleksandras; Haslam, Pauline; Mak, Lora; Mukhopadhyay, Abhik; Nadzirin, Nurul; Paysan-Lafosse, Typhaine; Sehnal, David; Sen, Sanchayita; Smart, Oliver S.; Varadi, Mihaly; Kleywegt, Gerard J.; Velankar, Sameer
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IMGT®, the international ImMunoGeneTics information system® 25 years on
err2014-11-05
err480
errOAAI
errLefranc, Marie-Paule; Giudicelli, Veronique; Duroux, Patrice; Jabado-Michaloud, Joumana; Folch, Geraldine; Aouinti, Safa; Carillon, Emilie; Duvergey, Hugo; Houles, Amelie; Paysan-Lafosse, Typhaine; Hadi-Saljoqi, Saida; Sasorith, Souphatta; Lefranc, Gerard; Kossida, Sofia
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