Ion I. Moraru - Publications, H-index & Citations

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Ion I. Moraru

european bioinformatics institute

29H-index

113Paper Count

4.0KCitation Count

Published Papers 19

Publication Date

Scalable cyberinfrastructure for experimental NMR data

Scientific Data

IF6.9

2025-12-17

OAAI

Jeffrey C. Hoch; Katherine Henzler-Wildman; Arthur S. Edison; Chad M. Rienstra; Christopher Bontempi; Jonathan R. Wedell; Gerard Weatherby; Harrison Burr; Yulia Pustovalova; Seenat Thongdee; Michael R. Gryk; Alexandra Pozhidaeva; Bernd Simon; Qi Cheng; Michael P. Wilson; Ion I. Moraru; Laura Morris; John N. Glushka; Mario Uchimiya; Alexander Eletsky; Abigail E. Moore; John H. Grimes; Alexander L. Paterson; Songlin Wang; Paulo R. Pinheiro; Boden H. Vanderloop; Mark W. Maciejewski

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Verification and reproducible curation of the BioModels repository

PLOS COMPUTATIONAL BIOLOGY

IF3.6

2025-12-01

PREAI

Smith, Lucian P.; Malik-Sheriff, Rahuman S.; Nguyen, Tung V. N.; Hermjakob, Henning; Karr, Jonathan; Shaikh, Bilal; Drescher, Logan; Moraru, Ion I.; Schaff, James C.; Agmon, Eran; Patrie, Alexander A.; Blinov, Michael L.; Hellerstein, Joseph L.; May, Elebeoba E.; Nickerson, David P.; Gennari, John H.; Sauro, Herbert M.

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Visualizing mechanistic models by integrating site-specific molecular details into reaction networks

Frontiers in Molecular Biosciences

IF4

2025-11-20

OAAI

Dan Vasilescu; James C. Schaff; Ion I. Moraru; Michael L. Blinov

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BioSimulators: a central registry of simulation engines and services for recommending specific tools

NUCLEIC ACIDS RESEARCH

IF13.1

2022-05-07

OAAI

Shaikh, Bilal; Smith, Lucian P.; Vasilescu, Dan; Marupilla, Gnaneswara; Wilson, Michael; Agmon, Eran; Agnew, Henry; Andrews, Steven S.; Anwar, Azraf; Beber, Moritz E.; Bergmann, Frank T.; Brooks, David; Brusch, Lutz; Calzone, Laurence; Choi, Kiri; Cooper, Joshua; Detloff, John; Drawert, Brian; Dumontier, Michel; Ermentrout, G. Bard; Faeder, James R.; Freiburger, Andrew P.; Frohlich, Fabian; Funahashi, Akira; Garny, Alan; Gennari, John H.; Gleeson, Padraig; Goelzer, Anne; Haiman, Zachary; Hasenauer, Jan; Hellerstein, Joseph L.; Hermjakob, Henning; Hoops, Stefan; Ison, Jon C.; Jahn, Diego; Jakubowski, Henry, V; Jordan, Ryann; Kalas, Matus; Koenig, Matthias; Liebermeister, Wolfram; Sheriff, Rahuman S. Malik; Mandal, Synchon; McDougal, Robert; Medley, J. Kyle; Mendes, Pedro; Mueller, Robert; Myers, Chris J.; Naldi, Aurelien; Nguyen, Tung V. N.; Nickerson, David P.; Olivier, Brett G.; Patoliya, Drashti; Pauleve, Loic; Petzold, Linda R.; Priya, Ankita; Rampadarath, Anand K.; Rohwer, Johann M.; Saglam, Ali S.; Singh, Dilawar; Sinha, Ankur; Snoep, Jacky; Sorby, Hugh; Spangler, Ryan; Starruss, Joern; Thomas, Payton J.; van Niekerk, David; Weindl, Daniel; Zhang, Fengkai; Zhukova, Anna; Goldberg, Arthur P.; Schaff, James C.; Blinov, Michael L.; Sauro, Herbert M.; Moraru, Ion I.; Karr, Jonathan R.

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Practical resources for enhancing the reproducibility of mechanistic modeling in systems biology

CURRENT OPINION IN SYSTEMS BIOLOGY

IF2.2

2021-09-01

OAAI

Blinov, Michael L.; Gennari, John H.; Karr, Jonathan R.; Moraru, Ion I.; Nickerson, David P.; Sauro, Herbert M.

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RunBioSimulations: an extensible web application that simulates a wide range of computational modeling frameworks, algorithms, and formats

NUCLEIC ACIDS RESEARCH

IF13.1

2021-05-21

OAAI

Shaikh, Bilal; Marupilla, Gnaneswara; Wilson, Mike; Blinov, Michael L.; Moraru, Ion I.; Karr, Jonathan R.

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Quantifying the roles of space and stochasticity in computer simulations for cell biology and cellular biochemistry

MOLECULAR BIOLOGY OF THE CELL

IF2.7

2021-01-15

OAAI

Johnson, M. E.; Chen, A.; Faeder, J. R.; Henning, P.; Moraru, I. I.; Meier-Schellersheim, M.; Murphy, R. F.; Prustel, T.; Theriot, J. A.; Uhrmacher, A. M.

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SBML Level 3: an extensible format for the exchange and reuse of biological models

MOLECULAR SYSTEMS BIOLOGY

IF7.7

2020-08-26

170

OAAI

Keating, Sarah M.; Waltemath, Dagmar; Koenig, Matthias; Zhang, Fengkai; Draeger, Andreas; Chaouiya, Claudine; Bergmann, Frank T.; Finney, Andrew; Gillespie, Colin S.; Helikar, Tomas; Hoops, Stefan; Malik-Sheriff, Rahuman S.; Moodie, Stuart L.; Moraru, Ion I.; Myers, Chris J.; Naldi, Aurelien; Olivier, Brett G.; Sahle, Sven; Schaff, James C.; Smith, Lucian P.; Swat, Maciej J.; Thieffry, Denis; Watanabe, Leandro; Wilkinson, Darren J.; Blinov, Michael L.; Begley, Kimberly; Faeder, James R.; Gomez, Harold F.; Hamm, Thomas M.; Inagaki, Yuichiro; Liebermeister, Wolfram; Lister, Allyson L.; Lucio, Daniel; Mjolsness, Eric; Proctor, Carole J.; Raman, Karthik; Rodriguez, Nicolas; Shaffer, Clifford A.; Shapiro, Bruce E.; Stelling, Joerg; Swainston, Neil; Tanimura, Naoki; Wagner, John; Meier-Schellersheim, Martin; Sauro, Herbert M.; Palsson, Bernhard; Bolouri, Hamid; Kitano, Hiroaki; Funahashi, Akira; Hermjakob, Henning; Doyle, John C.; Hucka, Michael

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Compartmental and Spatial Rule-Based Modeling with Virtual Cell

BIOPHYSICAL JOURNAL

IF3.1

2017-10-01

OAAI

Blinov, Michael L.; Schaff, James C.; Vasilescu, Dan; Moraru, Ion I.; Bloom, Judy E.; Loew, Leslie M.

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NMRbox: A Resource for Biomolecular NMR Computation

BIOPHYSICAL JOURNAL

IF3.1

2017-04-01

370

OAAI

Maciejewski, Mark W.; Schuyler, Adam D.; Gryk, Michael R.; Moraru, Ion I.; Romero, Pedro R.; Ulrich, Eldon L.; Eghbalnia, Hamid R.; Livny, Miron; Delaglio, Frank; Hoch, Jeffrey C.

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Extending Rule-Based Modeling to the Spatial Domain with Virtual Cell (VCELL)

BIOPHYSICAL JOURNAL

IF3.1

2017-02-01

OAAI

Schaff, James C.; Vasilescu, Dan; Moraru, Ion I.; Loew, Leslie M.; Blinov, Michael L.

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Langevin Dynamics Simulation of AKAP-PKA Complex: Re-Envisioning the Local Concentration Mechanism for Directing PKA Phosphorylation

BIOPHYSICAL JOURNAL

IF3.1

2016-02-01