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John C. Doyle

california institute of technology

90H-index
486Paper Count
6.6WCitation Count
Published Papers 58
Publication Date
Rate-Cost Tradeoffs in Continuous-Time Control With a Biomolecular Application
err2025-10-27
err0
PREAI
errYorie Nakahira; Fangzhou Xiao; Victoria Kostina; John C. Doyle
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SBML Level 3: an extensible format for the exchange and reuse of biological models
err2020-08-26
err170
errOAAI
errKeating, Sarah M.; Waltemath, Dagmar; Koenig, Matthias; Zhang, Fengkai; Draeger, Andreas; Chaouiya, Claudine; Bergmann, Frank T.; Finney, Andrew; Gillespie, Colin S.; Helikar, Tomas; Hoops, Stefan; Malik-Sheriff, Rahuman S.; Moodie, Stuart L.; Moraru, Ion I.; Myers, Chris J.; Naldi, Aurelien; Olivier, Brett G.; Sahle, Sven; Schaff, James C.; Smith, Lucian P.; Swat, Maciej J.; Thieffry, Denis; Watanabe, Leandro; Wilkinson, Darren J.; Blinov, Michael L.; Begley, Kimberly; Faeder, James R.; Gomez, Harold F.; Hamm, Thomas M.; Inagaki, Yuichiro; Liebermeister, Wolfram; Lister, Allyson L.; Lucio, Daniel; Mjolsness, Eric; Proctor, Carole J.; Raman, Karthik; Rodriguez, Nicolas; Shaffer, Clifford A.; Shapiro, Bruce E.; Stelling, Joerg; Swainston, Neil; Tanimura, Naoki; Wagner, John; Meier-Schellersheim, Martin; Sauro, Herbert M.; Palsson, Bernhard; Bolouri, Hamid; Kitano, Hiroaki; Funahashi, Akira; Hermjakob, Henning; Doyle, John C.; Hucka, Michael
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Metabolic multistability and hysteresis in a model aerobe-anaerobe microbiome community
err2020-08-14
err27
errOAAI
errKhazaei, Tahmineh; Williams, Rory L.; Bogatyrev, Said R.; Doyle, John C.; Henry, Christopher S.; Ismagilov, Rustem F.
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Fundamental Limits and Tradeoffs in Autocatalytic Pathways
err2020-02-01
err7
errOAAI
errSiami, Milad; Motee, Nader; Buzi, Gentian; Bamieh, Bassam; Khammash, Mustafa; Doyle, John C.
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Multinode Bilateral Control Model
err2019-10-01
err101
errOAAI
errWang, Yuh-Shyang; Matni, Nikolai; Doyle, John C.
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Hard Limits and Performance Tradeoffs in a Class of Antithetic Integral Feedback Networks
err2019-07-01
err42
errOAAI
errOlsman, Noah; Baetica, Ania-Ariadna; Xiao, Fangzhou; Leong, Yoke Peng; Murray, Richard M.; Doyle, John C.
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System level synthesis
err2019-01-01
err118
errOAAI
errAnderson, James; Doyle, John C.; Low, Steven H.; Matni, Nikolai
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A Control-Theoretic Approach to In-Network Congestion Management
err2018-12-01
err3
errOAAI
errWu, Ning; Bi, Yingjie; Michael, Nithin; Tang, Ao; Doyle, John C.; Matni, Nikolai
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Evaluation of Hansen et al.: Nuance Is Crucial in Comparisons of Noise
err2018-10-01
err1
errOAAI
errOlsman, Noah; Xiao, Fangzhou; Doyle, John
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Novel computational method for predicting polytherapy switching strategies to overcome tumor heterogeneity and evolution
err2017-03-13
err27
errOAAI
errJonsson, Vanessa D.; Blakely, Collin M.; Lin, Luping; Asthana, Saurabh; Matni, Nikolai; Olivas, Victor; Pazarentzos, Evangelos; Gubens, Matthew A.; Bastian, Boris C.; Taylor, Barry S.; Doyle, John C.; Bivona, Trever G.
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Evolutionary tradeoffs in cellular composition across diverse bacteria
err2016-04-05
err53
errOAAI
errKempes, Christopher P.; Wang, Lawrence; Amend, Jan P.; Doyle, John; Hoehler, Tori
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On Channel Failures, File Fragmentation Policies, and Heavy-Tailed Completion Times
err2016-02-01
err6
errOAAI
errNair, Jayakrishnan; Andreasson, Martin; Andrew, Lachlan L. H.; Low, Steven H.; Doyle, John C.
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