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M

Mathias Wilhelm

technical university of munich

45H-index
205Paper Count
1.1WCitation Count
Published Papers 89
Publication Date
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Decoding isozyme-specific substrate recognition in protein arginine deiminases by in vitro lysate-based citrullination mapping
errNature Communications
IF15.7
err2026-08-20
err0
errOAAI
errSophia Laposchan; Yi-Fang Yang; Kai-Han Chan; Rebecca Meelker Gonzalez; Wassim Gabriel; Mathias Wilhelm; Hui-Chih Hung; Chien-Yun Lee
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DORSSAA: Drug-target interactOmics Resource based on Stability/Solubility Alteration Assay
errMOLECULAR & CELLULAR PROTEOMICS
IF5.5
err2026-06-17
err0
errOAAI
errEhsan Zangene; Elham Gholizadeh; Veit Schwämmle; Amir Ata Saei; Mathias Wilhelm; Lukas Käll; Mohieddin Jafari
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errSave
Critical evaluation of drug response prediction models with DrEval
errNature Communications
IF15.7
err2026-05-12
err0
errOAAI
errJudith Bernett; Pascal Iversen; Mario Picciani; Mathias Wilhelm; Katharina Baum; Markus List
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Solubility based mechanistic profiling of combinatorial drug therapy
errNature Communications
IF15.7
err2026-03-25
err0
errOAAI
errElham Gholizadeh; Ehsan Zangene; Uladzislau Vadadokhau; Danilo Ritz; Juho J. Miettinen; Rabah Soliymani; Marc Baumann; Mathias Wilhelm; Esko Kankuri; Paul A. Haynes; Caroline A. Heckman; Amir A. Saei; Mohieddin Jafari
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Integration of alternative fragmentation techniques into standard LC-MS workflows using a single deep learning model enhances proteome coverage
errNature Methods
IF32.1
err2026-03-23
err0
errOAAI
errNikita Levin; Cemil Can Saylan; Joel Lapin; Yana Demyanenko; Kevin L. Yang; John Sidda; Alexey I. Nesvizhskii; Mathias Wilhelm; Shabaz Mohammed
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errSave
High-throughput chemical proteomics workflow for profiling protein citrullination dynamics
errNature Communications
IF15.7
err2026-02-21
err0
errOAAI
errRebecca Meelker González; Sophia Laposchan; Erik Riedel; Anna Fürst; Naomi O’Sullivan; Wassim Gabriel; Mathias Wilhelm; Percy A. Knolle; Guillaume Médard; Bernhard Kuster; Chien-Yun Lee
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errSave
Modanovo: A Unified Model for Post-Translational Modification-Aware de Novo Sequencing Using Experimental Spectra from In Vivo and Synthetic Peptides
errMolecular & Cellular Proteomics
IF5.5
err2025-12-24
err0
errOAAI
errDaniela Klaproth-Andrade; Yanik Bruns; Wassim Gabriel; Christian Nix; Valter Bergant; Andreas Pichlmair; Mathias Wilhelm; Julien Gagneur
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Comparative performance of scribe and database search engines in metaproteomic profiling of a ground-truth microbiome dataset
errJournal of Proteomics
IF2.8
err2025-10-21
err0
PREAI
errAndrew T. Rajczewski; Subina Mehta; Reid Wagner; Wassim Gabriel; James Johnson; Katherine Do; Simina Vintila; Mathias Wilhelm; Manuel Kleiner; Brian C. Searle; Timothy J. Griffin; Pratik D. Jagtap
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To Fly, or Not to Fly, That Is the Question: A Deep Learning Model for Peptide Detectability Prediction in Mass Spectrometry
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2025-05-09
err0
errOAAI
errAbdul-Khalek, Naim; Picciani, Mario; Shouman, Omar; Wimmer, Reinhard; Overgaard, Michael Toft; Wilhelm, Mathias; Echers, Simon Gregersen
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Peptide Property Prediction for Mass Spectrometry Using AI: An Introduction to State of the Art Models
errPROTEOMICS
IF3.9
err2025-04-01
err0
errOAAI
errAngelis, Jesse; Schroeder, Eva Ayla; Xiao, Zixuan; Gabriel, Wassim; Wilhelm, Mathias
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errSave
Integration of multi-omics data accelerates molecular analysis of common wheat traits
errNATURE COMMUNICATIONS
IF15.7
err2025-03-05
err1
errOAAI
errZhang, Ning; Tang, Li; Li, Songgang; Liu, Lu; Gao, Mengjuan; Wang, Sisheng; Chen, Daiying; Zhao, Yichao; Zheng, Ruiqing; Soleymaniniya, Armin; Zhang, Lingran; Wang, Wenkang; Yang, Xia; Ren, Yan; Sun, Congwei; Wilhelm, Mathias; Wang, Daowen; Li, Min; Chen, Feng
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ProSIMSIt: The Best of Both Worlds in Data-Driven Rescoring and Identification Transfer
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2025-03-01
err0
errOAAI
errHamood, Firas; Gabriel, Wassim; Pfeiffer, Pia; Kuster, Bernhard; Wilhelm, Mathias; The, Matthew
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errSave
Proteomic Diversity in Bacteria: Insights and Implications for Bacterial Identification
errMOLECULAR & CELLULAR PROTEOMICS
IF5.5
err2025-03-01
err0
errOAAI
errAbele, Miriam; Soleymaniniya, Armin; Bayer, Florian P.; Lomp, Nina; Doll, Etienne; Meng, Chen; Neuhaus, Klaus; Scherer, Siegfried; Wenning, Mareike; Wantia, Nina; Kuster, Bernhard; Wilhelm, Mathias; Ludwig, Christina
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errSave
SWAPS: A Modular Deep-Learning Empowered Peptide Identity Propagation Framework Beyond Match-Between-Run
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2025-03-01
err0
errOAAI
errXiao, Zixuan; Tu''shaus, Johanna; Kuster, Bernhard; The, Matthew; Wilhelm, Mathias
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errSave
Deep Learning Enhances Precision of Citrullination Identification in Human and Plant Tissue Proteomes
errMOLECULAR & CELLULAR PROTEOMICS
IF5.5
err2025-02-01
err0
errOAAI
errGabriel, Wassim; Gonzalez, Rebecca Meelker; Laposchan, Sophia; Riedel, Erik; Duendar, Goenuel; Poppenberger, Brigitte; Wilhelm, Mathias; Lee, Chien-Yun
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errSave
PTMNavigator: interactive visualization of differentially regulated post-translational modifications in cellular signaling pathways
errNATURE COMMUNICATIONS
IF15.7
err2025-01-08
err2
errOAAI
errMueller, Julian; Bayer, Florian P.; Wilhelm, Mathias
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errSave
π-HuB: the proteomic navigator of the human body (Vol 636, pg 322, 2024)
errNATURE
IF48.5
err2024-12-23
err0
PREAI
errHe, Fuchu; Aebersold, Ruedi; Baker, Mark S.; Bian, Xiuwu; Bo, Xiaochen; Chan, Daniel W.; Chang, Cheng; Chen, Luonan; Chen, Xiangmei; Chen, Yu-Ju; Cheng, Heping; Collins, Ben C.; Corrales, Fernando; Cox, Juergen; E, Weinan; Van Eyk, Jennifer E.; Fan, Jia; Faridi, Pouya; Figeys, Daniel; Gao, George Fu; Gao, Wen; Gao, Zu-Hua; Goda, Keisuke; Goh, Wilson Wen Bin; Gu, Dongfeng; Guo, Changjiang; Guo, Tiannan; He, Yuezhong; Heck, Albert J. R.; Hermjakob, Henning; Hunter, Tony; Iyer, Narayanan Gopalakrishna; Jiang, Ying; Jimenez, Connie R.; Joshi, Lokesh; Kelleher, Neil L.; Li, Ming; Li, Yang; Lin, Qingsong; Liu, Cui Hua; Liu, Fan; Liu, Guang-Hui; Liu, Yansheng; Liu, Zhihua; Low, Teck Yew; Lu, Ben; Mann, Matthias; Meng, Anming; Moritz, Robert L.; Nice, Edouard; Ning, Guang; Omenn, Gilbert S.; Overall, Christopher M.; Palmisano, Giuseppe; Peng, Yaojin; Pineau, Charles; Poon, Terence Chuen Wai; Purcell, Anthony W.; Qiao, Jie; Reddel, Roger R.; Robinson, Phillip J.; Roncada, Paola; Sander, Chris; Sha, Jiahao; Song, Erwei; Srivastava, Sanjeeva; Sun, Aihua; Sze, Siu Kwan; Tang, Chao; Tang, Liujun; Tian, Ruijun; Vizcaino, Juan Antonio; Wang, Chanjuan; Wang, Chen; Wang, Xiaowen; Wang, Xinxing; Wang, Yan; Weiss, Tobias; Wilhelm, Mathias; Winkler, Robert; Wollscheid, Bernd; Wong, Limsoon; Xie, Linhai; Xie, Wei; Xu, Tao; Xu, Tianhao; Yan, Liying; Yang, Jing; Yang, Xiao; Yates, John; Yun, Tao; Zhai, Qiwei; Zhang, Bing; Zhang, Hui; Zhang, Lihua; Zhang, Lingqiang; Zhang, Pingwen; Zhang, Yukui; Zheng, Yu Zi; Zhong, Qing; IT-HuB Consortium, Daniel W.
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Theoretical Assessment of Indistinguishable Peptides in Mass Spectrometry-Based Proteomics
errANALYTICAL CHEMISTRY
IF6.7
err2024-09-25
err0
errOAAI
errElhamraoui, Zahra; Borras, Eva; Wilhelm, Mathias; Sabido, Eduard
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Exploring crop genomes: assembly features, gene prediction accuracy, and implications for proteomics studies (vol 25, 619, 2024)
errBMC GENOMICS
IF3.7
err2024-09-19
err0
errOAAI
errAbbas, Qussai; Wilhelm, Mathias; Kuster, Bernhard; Poppenberger, Brigitte; Frishman, Dmitrij
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errSave
Network medicine-based epistasis detection in complex diseases: ready for quantum computing
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-08-23
err0
errOAAI
errHoffmann, Markus; Poschenrieder, Julian M.; Incudini, Massimiliano; Baier, Sylvie; Fritz, Amelie; Maier, Andreas; Hartung, Michael; Hoffmann, Christian; Trummer, Nico; Adamowicz, Klaudia; Picciani, Mario; Scheibling, Evelyn; Harl, Maximilian, V; Lesch, Ingmar; Frey, Hunor; Kayser, Simon; Wissenberg, Paul; Schwartz, Leon; Hafner, Leon; Acharya, Aakriti; Hackl, Lena; Grabert, Gordon; Lee, Sung-Gwon; Cho, Gyuhyeok; Cloward, Matthew E.; Jankowski, Jakub; Lee, Hye Kyung; Tsoy, Olga; Wenke, Nina; Pedersen, Anders Gorm; Bonnelykke, Klaus; Mandarino, Antonio; Melograna, Federico; Schulz, Laura; Climente-Gonzalez, Hector; Wilhelm, Mathias; Iapichino, Luigi; Wienbrandt, Lars; Ellinghaus, David; Van Steen, Kristel; Grossi, Michele; Furth, Priscilla A.; Hennighausen, Lothar; Di Pierro, Alessandra; Baumbach, Jan; Kacprowski, Tim; List, Markus; Blumenthal, David B.
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Research Directions

No research directions
Co-authors
Cooperation Journals
M
Matthias Mann
H-index: 250 · Papers: 1.4K
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Ruedi Aebersold
H-index: 198 · Papers: 1.2K
T
Tony Hunter
H-index: 173 · Papers: 652
S
Steven A. Carr
H-index: 152 · Papers: 987
M
Michael J. Keating
H-index: 145 · Papers: 1.8K
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