Not logged in Open-Source and FAIR Research Software for Proteomics Perez-Riverol, Yasset; Bittremieux, Wout; Noble, William S.; Martens, Lennart; Bilbao, Aivett; Lazear, Michael R.; Gruening, Bjorn; Katz, Daniel S.; MacCoss, Michael J.; Dai, Chengxin; Eng, Jimmy K.; Bouwmeester, Robbin; Shortreed, Michael R.; Audain, Enrique; Sachsenberg, Timo; Van Goey, Jeroen; Wallmann, Georg; Wen, Bo; Kall, Lukas; Fondrie, William E. Share Save
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ProHap enables human proteomic database generation accounting for population diversity Vasicek, Jakub; Kuznetsova, Ksenia G.; Skiadopoulou, Dafni; Unger, Lucas; Chera, Simona; Ghila, Luiza M.; Bandeira, Nuno; Njolstad, Pal R.; Johansson, Stefan; Bruckner, Stefan; Kall, Lukas; Vaudel, Marc Share Save
Quantitative proteomics of patient fibroblasts reveal biomarkers and diagnostic signatures of mitochondrial disease Correia, Sandrina P.; Moedas, Marco F.; Taylor, Lucie S.; Naess, Karin; Lim, Albert Z.; McFarland, Robert; Kazior, Zuzanna; Rumyantseva, Anastasia; Wibom, Rolf; Engvall, Martin; Bruhn, Helene; Lesko, Nicole; Vegvari, Akos; Kall, Lukas; Trost, Matthias; Alston, Charlotte L.; Freyer, Christoph; Taylor, Robert W.; Wedell, Anna; Wredenberg, Anna Share Save
quantms: a cloud-based pipeline for quantitative proteomics enables the reanalysis of public proteomics data Dai, Chengxin; Pfeuffer, Julianus; Wang, Hong; Zheng, Ping; Kaell, Lukas; Sachsenberg, Timo; Demichev, Vadim; Bai, Mingze; Kohlbacher, Oliver; Perez-Riverol, Yasset Share Save
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Spatial multimodal analysis of transcriptomes and metabolomes in tissues Vicari, Marco; Mirzazadeh, Reza; Nilsson, Anna; Shariatgorji, Reza; Bjaerterot, Patrik; Larsson, Ludvig; Lee, Hower; Nilsson, Mats; Foyer, Julia; Ekvall, Markus; Czarnewski, Paulo; Zhang, Xiaoqun; Svenningsson, Per; Kaell, Lukas; Andren, Per E.; Lundeberg, Joakim Share Save
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Toward an Integrated Machine Learning Model of a Proteomics Experiment Neely, Benjamin A.; Dorfer, Viktoria; Martens, Lennart; Bludau, Isabell; Bouwmeester, Robbin; Degroeve, Sven; Deutsch, Eric W.; Gessulat, Siegfried; Kaell, Lukas; Palczynski, Pawel; Payne, Samuel H.; Rehfeldt, Tobias Greisager; Schmidt, Tobias; Schwaemmle, Veit; Uszkoreit, Julian; Vizcaino, Juan Antonio; Wilhelm, Mathias; Palmblad, Magnus Share Save
A Comprehensive Evaluation of Consensus Spectrum Generation Methods in Proteomics Luo, Xiyang; Bittremieux, Wout; Griss, Johannes; Deutsch, Eric W.; Sachsenberg, Timo; Levitsky, Lev, I; Ivanov, Mark, V; Bubis, Julia A.; Gabriels, Ralf; Webel, Henry; Sanchez, Aniel; Bai, Mingze; Kall, Lukas; Perez-Riverol, Yasset Share Save
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Putting Humpty Dumpty Back Together Again: What Does Protein Quantification Mean in Bottom-Up Proteomics? Plubell, Deanna L.; Kall, Lukas; Webb-Robertson, Bobbie-Jo; Bramer, Lisa M.; Ives, Ashley; Kelleher, Neil L.; Smith, Lloyd M.; Montine, Thomas J.; Wu, Christine C.; MacCoss, Michael J. Share Save
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The one-carbon pool controls mitochondrial energy metabolism via complex I and iron-sulfur clusters Schober, Florian A.; Moore, David; Atanassov, Ilian; Moedas, Marco F.; Clemente, Paula; Vegvari, Akos; El Fissi, Najla; Filograna, Roberta; Bucher, Anna-Lena; Hinze, Yvonne; The, Matthew; Hedman, Erik; Chernogubova, Ekaterina; Begzati, Arjana; Wibom, Rolf; Jain, Mohit; Nilsson, Roland; Kall, Lukas; Wedell, Anna; Freyer, Christoph; Wredenberg, Anna Share Save
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Speeding Up Percolator Halloran, John T.; Zhang, Hantian; Kara, Kaan; Renggli, Cedric; The, Matthew; Zhang, Ce; Rocke, David M.; Kall, Lukas; Noble, William Stafford Share Save
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