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Alexander Kanitz

University of Basel

15H-index
59Paper Count
3.8KCitation Count
Published Papers 14
Publication Date
Managing Workflow Executions with WESkit
err2026-02-24
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errValentin Schneider-Lunitz; Philip R Kensche; Landfried Kraatz; Philipp Strubel; Stefan Borufka; Gurudeep Parala; Alexander Kanitz; Roland Eils; Ivo Buchhalter; Sven O Twardziok; null; null
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HTSinfer: inferring metadata from bulk Illumina RNA-Seq libraries
err2025-02-19
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errBalajti, Mate; Kandhari, Rohan; Juric, Boris; Zavolan, Mihaela; Kanitz, Alexander
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Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data
errRNA
IF5
err2023-10-10
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errBryce-Smith, Sam; Burri, Dominik; Gazzara, Matthew R.; Herrmann, Christina J.; Danecka, Weronika; Fitzsimmons, Christina M.; Wan, Yuk Kei; Zhuang, Farica; Fansler, Mervin M.; Fernandez, Jose M.; Ferret, Meritxell; Gonzalez-Uriarte, Asier; Haynes, Samuel; Herdman, Chelsea; Kanitz, Alexander; Katsantoni, Maria; Marini, Federico; McDonnel, Euan; Nicolet, Ben; Poon, Chi-Lam; Rot, Gregor; Scharfen, Leonard; Wu, Pin-Jou; Yoon, Yoseop; Barash, Yoseph; Zavolan, Mihaela
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CFIm-mediated alternative polyadenylation remodels cellular signaling and miRNA biogenesis
err2022-03-02
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errGhosh, Souvik; Ataman, Meric; Bak, Maciej; Borsch, Anastasiya; Schmidt, Alexander; Buczak, Katarzyna; Martin, Georges; Dimitriades, Beatrice; Herrmann, Christina J.; Kanitz, Alexander; Zavolan, Mihaela
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Untargeted sequencing of circulating microRNAs in a healthy and diseased older population
err2022-02-22
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errStreese, Lukas; Demougin, Philippe; Iborra, Paula; Kanitz, Alexander; Deiseroth, Arne; Kropfl, Julia M.; Schmidt-Trucksass, Arno; Zavolan, Mihaela; Hanssen, Henner
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GA4GH: International policies and standards for data sharing across genomic research and healthcare
err2021-11-01
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errRehm, Heidi L.; Page, Angela J. H.; Smith, Lindsay; Adams, Jeremy B.; Alterovitz, Gil; Babb, Lawrence J.; Barkley, Maxmillian P.; Baudis, Michael; Beauvais, Michael J. S.; Beck, Tim; Beckmann, Jacques S.; Beltran, Sergi; Bernick, David; Bernier, Alexander; Bonfield, James K.; Boughtwood, Tiffany F.; Bourque, Guillaume; Bowers, Sarion R.; Brookes, Anthony J.; Brudno, Michael; Brush, Matthew H.; Bujold, David; Burdett, Tony; Buske, Orion J.; Cabili, Moran N.; Cameron, Daniel L.; Carroll, Robert J.; Casas-Silva, Esmeralda; Chakravarty, Debyani; Chaudhari, Bimal P.; Chen, Shu Hui; Cherry, J. Michael; Chung, Justina; Cline, Melissa; Clissold, Hayley L.; Cook-Deegan, Robert M.; Courtot, Melanie; Cunningham, Fiona; Cupak, Miro; Davies, Robert M.; Denisko, Danielle; Doerr, Megan J.; Dolman, Lena I.; Dove, Edward S.; Dursi, L. Jonathan; Dyke, Stephanie O. M.; Eddy, James A.; Eilbeck, Karen; Ellrott, Kyle P.; Fairley, Susan; Fakhro, Khalid A.; Firth, Helen V.; Fitzsimons, Michael S.; Fiume, Marc; Flicek, Paul; Fore, Ian M.; Freeberg, Mallory A.; Freimuth, Robert R.; Fromont, Lauren A.; Fuerth, Jonathan; Gaff, Clara L.; Gan, Weiniu; Ghanaim, Elena M.; Glazer, David; Green, Robert C.; Griffith, Malachi; Griffith, Obi L.; Grossman, Robert L.; Groza, Tudor; Auvil, Jaime M. Guidry; Guigo, Roderic; Gupta, Dipayan; Haendel, Melissa A.; Hamosh, Ada; Hansen, David P.; Hart, Reece K.; Hartley, Dean Mitchell; Haussler, David; Hendricks-Sturrup, Rachele M.; Ho, Calvin W. L.; Hobb, Ashley E.; Hoffman, Michael M.; Hofmann, Oliver M.; Holub, Petr; Hsu, Jacob Shujui; Hubaux, Jean-Pierre; Hunt, Sarah E.; Husami, Ammar; Jacobsen, Julius O.; Jamuar, Saumya S.; Janes, Elizabeth L.; Jeanson, Francis; Jene, Aina; Johns, Amber L.; Joly, Yann; Jones, Steven J. M.; Kanitz, Alexander; Kato, Kazuto; Keane, Thomas M.; Kekesi-Lafrance, Kristina; Kelleher, Jerome; Kerry, Giselle; Khor, Seik-Soon; Knoppers, Bartha M.; Konopko, Melissa A.; Kosaki, Kenjiro; Kuba, Martin; Lawson, Jonathan; Leinonen, Rasko; Li, Stephanie; Lin, Michael F.; Linden, Mikael; Liu, Xianglin; Liyanage, Isuru Udara; Lopez, Javier; Lucassen, Anneke M.; Lukowski, Michael; Mann, Alice L.; Marshall, John; Mattioni, Michele; Metke-Jimenez, Alejandro; Middleton, Anna; Milne, Richard J.; Molnar-Gabor, Fruzsina; Mulder, Nicola; Munoz-Torres, Monica C.; Nag, Rishi; Nakagawa, Hidewaki; Nasir, Jamal; Navarro, Arcadi; Nelson, Tristan H.; Niewielska, Ania; Nisselle, Amy; Niu, Jeffrey; Nyronen, Tommi H.; O'Connor, Brian D.; Oesterle, Sabine; Ogishima, Soichi; Wang, Vivian Ota; Paglione, Laura A. D.; Palumbo, Emilio; Parkinson, Helen E.; Philippakis, Anthony A.; Pizarro, Angel D.; Prlic, Andreas; Rambla, Jordi; Rendon, Augusto; Rider, Renee A.; Robinson, Peter N.; Rodarmer, Kurt W.; Rodriguez, Laura Lyman; Rubin, Alan F.; Rueda, Manuel; Rushton, Gregory A.; Ryan, Rosalyn S.; Saunders, Gary I.; Schuilenburg, Helen; Schwede, Torsten; Scollen, Serena; Senf, Alexander; Sheffield, Nathan C.; Skantharajah, Neerjah; Smith, Albert V.; Sofia, Heidi J.; Spalding, Dylan; Spurdle, Amanda B.; Stark, Zornitza; Stein, Lincoln D.; Suematsu, Makoto; Tan, Patrick; Tedds, Jonathan A.; Thomson, Alastair A.; Thorogood, Adrian; Tickle, Timothy L.; Tokunaga, Katsushi; Tomroos, Juha; Torrents, David; Upchurch, Sean; Valencia, Alfonso; Guimera, Roman Valls; Vamathevan, Jessica; Varma, Susheel; Vears, Danya F.; Viner, Coby; Voisin, Craig; Wagner, Alex H.; Wallace, Susan E.; Walsh, Brian P.; Williams, Marc S.; Winkler, Eva C.; Wold, Barbara J.; Wood, Grant M.; Woolley, J. Patrick; Yamasaki, Chisato; Yates, Andrew D.; Yung, Christina K.; Zass, Lyndon J.; Zaytseva, Ksenia; Zhang, Junjun; Goodhand, Peter; North, Kathryn; Birney, Ewan
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MiR-CLIP reveals iso-miR selective regulation in the miR-124 targetome
err2020-12-09
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errWang, Yuluan; Soneson, Charlotte; Malinowska, Anna L.; Laski, Artur; Ghosh, Souvik; Kanitz, Alexander; Gebert, Luca F. R.; Robinson, Mark D.; Hall, Jonathan
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PolyASite 2.0: a consolidated atlas of polyadenylation sites from 3′ end sequencing
err2019-10-16
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errHerrmann, Christina J.; Schmidt, Ralf; Kanitz, Alexander; Artimo, Panu; Gruber, Andreas J.; Zavolan, Mihaela
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Tandem RNA isolation reveals functional rearrangement of RNA-binding proteins on CDKN1B/p27Kip1 3'UTRs in cisplatin treated cells
err2019-09-16
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errIadevaia, Valentina; Wouters, Maikel D.; Kanitz, Alexander; Matia-Gonzalez, Ana M.; Laing, Emma E.; Gerber, Andre P.
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MINA-1 and WAGO-4 are part of regulatory network coordinating germ cell death and RNAi in C. elegans
err2019-02-06
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errSendoel, Ataman; Subasic, Deni; Ducoli, Luca; Keller, Martin; Michel, Erich; Kohler, Ines; Singh, Kapil Dev; Zheng, Xue; Bruemmer, Anneke; Imig, Jochen; Kishore, Shivendra; Wu, Yibo; Kanitz, Alexander; Kaech, Andres; Mittal, Nitish; Matia-Gonzalez, Ana M.; Gerber, Andre P.; Zavolan, Mihaela; Aebersold, Ruedi; Hall, Jonathan; Allain, Frederic H-T; Hengartner, Michael O.
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Conserved regulation of RNA processing in somatic cell reprogramming
err2019-01-31
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errKanitz, Alexander; Syed, Afzal Pasha; Kaji, Keisuke; Zavolan, Mihaela
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Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data
err2015-07-23
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errKanitz, Alexander; Gypas, Foivos; Gruber, Andreas J.; Gruber, Andreas R.; Martin, Georges; Zavolan, Mihaela
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Pseudotyping Lentiviral Vectors with a Modified GP64 Envelope Proteins Redirects Gene Transfer In Vitro and In Vivo
err2006-01-01
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errMarkusic, David; van Til, Niek; Kanitz, Alexander; Hiralall, Johan; Oude-Elferink, Ronald; Seppen, Jurgen
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