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Fatemeh Vafaee

university of new south wales

18H-index
133Paper Count
2.0KCitation Count
Published Papers 39
Publication Date
Deep learning of 777 K bulk transcriptomes reveals human–mouse gene conservation beyond DNA sequence similarity
err2026-05-27
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errOAAI
errZheng Su; Mingyan Fang; Andrei Smolnikov; Fatemeh Vafaee; Marcel E. Dinger; Emily C. Oates
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SAFAARI: Contrastive Adversarial Open-set Domain Adaptation for Single-cell Integration & Annotation
err2026-01-30
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errOAAI
errFatemeh Aminzadeh; Jun Wu; Jingrui He; Morteza Saberi; Fatemeh Vafaee; null
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Epithelial-mesenchymal cell state heterogeneity predetermines differential phospho-signaling responses to EGF stimulation
err2026-01-01
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PREAI
errKohane, Felix, V; Johnstone, Chantelle; Neumann, Daniel P.; Gunawan, Ihuan; Huang, Tim; Vafaee, Fatemeh; Chaffer, Christine L.; Lock, John G.
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Computational insights into intranasal drug delivery: Enhancing outcomes in pediatric cystic fibrosis
err2025-10-01
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PREAI
errTarki, Fatemeh Ebrahimi; Sharbatdar, Mahkame; Zarrabi, Mahboobeh; Vafaee, Fatemeh; Khanbabaei, Ghamartaj
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The Quest for Non-Invasive Diagnosis: A Review of Liquid Biopsy in Glioblastoma
err2025-08-20
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PREAI
errMaria George Elias; Harry Hadjiyiannis; Fatemeh Vafaee; Kieran F. Scott; Paul de Souza; Therese M. Becker; Shadma Fatima
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Extensible Immunofluorescence (ExIF) accessibly generates high-plexity datasets by integrating standard 4-plex imaging data
err2025-05-17
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errOAAI
errGunawan, Ihuan; Kohane, Felix V.; Dey, Moumitha; Nguyen, Kathy; Zheng, Ye; Neumann, Daniel P.; Vafaee, Fatemeh; Meijering, Erik; Lock, John G.
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Clinical Response to Azacitidine in Myelodysplastic Neoplasms Is Associated with Distinct DNA Methylation Changes in Haematopoietic Stem and Progenitor Cells In Vivo
errBLOOD
IF23.1
err2024-11-05
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PREAI
errThoms, Julie A. I.; Yan, Feng; Hampton, Henry R.; Davidson, Sarah; Joshi, Swapna; Saw, Jesslyn; Sarowar, Chowdhury H.; Lim, Xin Ying; Nunez, Andrea C.; Kakadia, Purvi M.; Bhuyan, Golam Sarower; Zou, Xiaoheng; Nguyen, Mary; Ghodousi, Elaheh S.; Koch, Forrest C.; Vafaee, Fatemeh; Thompson, Richard; Karimi, Mohammad M.; Pickford, Russell; Raftery, Mark J.; Hough, Sally; Buckland, Griselda; Bailey, Michelle; Ghodke, Yuvaraj; Absar, Noorul; Vaughan, Lachlin; Pasalic, Leonardo; Fong, Chun Yew; Kenealy, Melita; Hiwase, Devendra; Stoddart, Rohanna; Mohammed, Soma; Lee, Linda; Passam, Freda H.; Larsen, Stephen Robert; Spring, Kevin J.; Skarratt, Kristen K.; Ling, Silvia; Stevenson, William S.; Presgrave, Peter; Rebeiro, Patricia; Tiley, Campbell; Fuller, Stephen; Roncolato, Fernando; Enjeti, K.; Hoenemann, Dirk; Lemech, Charlotte; Jolly, Christopher J.; Bohlander, Stefan K.; Curtis, David J.; Wong, Jason; Unnikrishnan, Ashwin; Enjeti, Anoop K.; Hertzberg, Mark S.; Olivier, Jake; Polizzotto, Mark N.; Pimanda, John E.
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AI-powered prediction of HCC recurrence after surgical resection: Personalised intervention opportunities using patient-specific risk factors
err2024-07-24
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errOAAI
errZandavi, Seid Miad; Kim, Christy; Goodwin, Thomas; Thilakanathan, Cynthuja; Bostanara, Maryam; Akon, Anna Camille; Al Mouiee, Daniel; Barisic, Sasha; Majeed, Ammar; Kemp, William; Chu, Francis; Smith, Marty; Collins, Kate; Wong, Vincent Wai-Sun; Wong, Grace Lai-Hung; Behary, Jason; Roberts, Stuart K.; Ng, Kelvin K. C.; Vafaee, Fatemeh; Zekry, Amany
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Development of an Artificial Intelligence-based breast cancer detection model using Plasma Lipidomic Signature
err2024-05-02
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PREAI
errLim, Ameline; Kehelpannala, Cheka; Vafaee, Fatemeh; Koch, Forrest; Pascovici, Dana; Li, Desmond; Heffernan, Kerry; Lamoury, Gillian; Batarseh, Amani; Mann, Bruce
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3D-IncNet: Head and Neck (H&N) Primary Tumors Segmentation and Survival Prediction
err2024-03-01
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PREAI
errQayyum, Abdul; Benzinou, Abdesslam; Razzak, Imran; Mazher, Moona; Nguyen, Thanh Thi; Puig, Domenec; Vafaee, Fatemeh
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BloodChIP Xtra: an expanded database of comparative genome-wide transcription factor binding and gene-expression profiles in healthy human stem/progenitor subsets and leukemic cells
err2023-10-23
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errOAAI
errThoms, Julie A., I; Koch, Forrest C.; Raei, Alireza; Subramanian, Shruthi; Wong, Jason W. H.; Vafaee, Fatemeh; Pimanda, John E.
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An introduction to representation learning for single-cell data analysis
err2023-08-01
err7
errOAAI
errGunawan, Ihuan; Vafaee, Fatemeh; Meijering, Erik; Lock, John George
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Anti-cancer potential of synergistic phytochemical combinations is influenced by the genetic profile of prostate cancer cell lines
err2023-03-07
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errOAAI
errGano, Carol A.; Fatima, Shadma; Failes, Timothy W.; Arndt, Gregory M.; Sajinovic, Mila; Mahns, David; Saedisomeolia, Ahmad; Coorssen, Jens R.; Bucci, Joseph; de Souza, Paul; Vafaee, Fatemeh; Scott, Kieran F.
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dRNASb: a systems biology approach to decipher dynamics of host- pathogen interactions using temporal dual RNA-seq data
err2022-09-30
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errOAAI
errDinarvand, Mojdeh; Koch, Forrest C.; Al Mouiee, Daniel; Vuong, Kaylee; Vijayan, Abhishek; Tanzim, Afia Fariha; Azad, A. K. M.; Penesyan, Anahit; Castallo-Rodriguez, Natalia; Vafaee, Fatemeh
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Disentangling single-cell omics representation with a power spectral density-based feature extraction
err2022-05-25
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errOAAI
errZandavi, Seid Miad; Koch, Forrest C.; Vijayan, Abhishek; Zanini, Fabio; Mora, Fatima Valdes; Ortega, David Gallego; Vafaee, Fatemeh
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Human Group IIA Phospholipase A2-Three Decades on from Its Discovery
err2021-11-30
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errOAAI
errScott, Kieran F.; Mann, Timothy J.; Fatima, Shadma; Sajinovic, Mila; Razdan, Anshuli; Kim, Ryung Rae; Cooper, Adam; Roohullah, Aflah; Bryant, Katherine J.; Gamage, Kasuni K.; Harman, David G.; Vafaee, Fatemeh; Graham, Garry G.; Church, W. Bret; Russell, Pamela J.; Dong, Qihan; de Souza, Paul
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