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SaveCellSNVReg: a multidimensional resource for SNV-mediated regulatory perturbations in single-cell and spatial omics
Shi, Jingyi; Zhang, Shiqian; Lu, Zhenglin; Zhou, Weiwei; Lu, Weijian; Chen, Gengdong; Li, Jianing; Liu, Wenhui; Huang, Jiaqi; Jiang, Tiantongfei; Jin, Xiyun; Xu, Juan; Shao, Tingting Share Save Share Save TriCLFF: a multi-modal feature fusion framework using contrastive learning for spatial domain identificationPang, Fenglan; Xue, Guangfu; Yang, Wenyi; Cai, Yideng; Que, Jinhao; Sun, Haoxiu; Wang, Pingping; Su, Shuaiyu; Jin, Xiyun; Ding, Qian; Wang, Zuxiang; Luo, Meng; Yang, Yuexin; Lin, Yi; Tan, Renjie; Liu, Yusong; Xu, Zhaochun; Jiang, Qinghua Share Save Dimension reduction, cell clustering, and cell-cell communication inference for single-cell transcriptomics with DcjCommDing, Qian; Yang, Wenyi; Xue, Guangfu; Liu, Hongxin; Cai, Yideng; Que, Jinhao; Jin, Xiyun; Luo, Meng; Pang, Fenglan; Yang, Yuexin; Lin, Yi; Liu, Yusong; Sun, Haoxiu; Tan, Renjie; Wang, Pingping; Xu, Zhaochun; Jiang, Qinghua Share Save Deciphering cell-cell communication at single-cell resolution for spatial transcriptomics with subgraph-based graph attention networkYang, Wenyi; Wang, Pingping; Xu, Shouping; Wang, Tao; Luo, Meng; Cai, Yideng; Xu, Chang; Xue, Guangfu; Que, Jinhao; Ding, Qian; Jin, Xiyun; Yang, Yuexin; Pang, Fenglan; Pang, Boran; Lin, Yi; Nie, Huan; Xu, Zhaochun; Ji, Yong; Jiang, Qinghua Share Save Neoadjuvant immunochemotherapy improves clinical outcomes of patients with esophageal cancer by mediating anti-tumor immunity of CD8+T (Tc1) and CD16+NK cellsHe, Yunlong; Yang, Depeng; Lin, Xiaoyu; Zhang, Jinfeng; Cheng, Rui; Cao, Liangyu; Yang, Lijun; Zhang, Mengmeng; Shi, Xinyue; Jin, Xiyun; Sun, Handi; Sun, Haoxiu; Zang, Jingyu; Li, Yu; Ma, Jianqun; Nie, Huan Share Save The Deep Learning Framework iCanTCR Enables Early Cancer Detection Using the T-cell Receptor Repertoire in Peripheral BloodCai, Yideng; Luo, Meng; Yang, Wenyi; Xu, Chang; Wang, Pingping; Xue, Guangfu; Jin, Xiyun; Cheng, Rui; Que, Jinhao; Zhou, Wenyang; Pang, Boran; Xu, Shouping; Li, Yu; Jiang, Qinghua; Xu, Zhaochun Share Save Functional requirement of alternative splicing in epithelial-mesenchymal transition of pancreatic circulating tumorXiao, Lixing; Sun, Haoxiu; Cheng, Rui; Yang, Rongrong; Jin, Xiyun; Xu, Zhaochun; Cai, Yideng; Yang, Yuexin; Pang, Fenglan; Xue, Guangfu; Wang, Pingping; Jiang, Qinghua; Nie, Huan Share Save CancerProteome: a resource to functionally decipher the proteome landscape in cancerLv, Dezhong; Li, Donghao; Cai, Yangyang; Guo, Jiyu; Chu, Sen; Yu, Jiaxin; Liu, Kefan; Jiang, Tiantongfei; Ding, Na; Jin, Xiyun; Li, Yongsheng; Xu, Juan Share Save Identification of shared characteristics in tumor-infiltrating T cells across 15 cancersJin, Xiyun; Cai, Yideng; Xue, Guangfu; Que, Jinhao; Cheng, Rui; Yang, Yuexin; Xiao, Lixing; Lin, Xiaoyu; Xu, Chang; Wang, Pingping; Xu, Zhaochun; Nie, Huan; Jiang, Qinghua Share Save Share Save DeepST: identifying spatial domains in spatial transcriptomics by deep learningXu, Chang; Jin, Xiyun; Wei, Songren; Wang, Pingping; Luo, Meng; Xu, Zhaochun; Yang, Wenyi; Cai, Yideng; Xiao, Lixing; Lin, Xiaoyu; Liu, Hongxin; Cheng, Rui; Pang, Fenglan; Chen, Rui; Su, Xi; Hu, Ying; Wang, Guohua; Jiang, Qinghua Share Save MutCov: A pipeline for evaluating the effect of mutations in spike protein on infectivity and antigenicity of SARS-CoV-2Zhou, Wenyang; Xu, Chang; Luo, Meng; Wang, Pingping; Xu, Zhaochun; Xue, Guangfu; Jin, Xiyun; Huang, Yan; Li, Yiqun; Nie, Huan; Jiang, Qinghua; Anashkina, Anastasia A. Share Save Global Characterization of Peripheral B Cells in Parkinson's Disease by Single-Cell RNA and BCR SequencingWang, Pingping; Luo, Meng; Zhou, Wenyang; Jin, Xiyun; Xu, Zhaochun; Yan, Shi; Li, Yiqun; Xu, Chang; Cheng, Rui; Huang, Yan; Lin, Xiaoyu; Yao, Lifen; Nie, Huan; Jiang, Qinghua Share Save Share Save DLpTCR: an ensemble deep learning framework for predicting immunogenic peptide recognized by T cell receptorXu, Zhaochun; Luo, Meng; Lin, Weizhong; Xue, Guangfu; Wang, Pingping; Jin, Xiyun; Xu, Chang; Zhou, Wenyang; Cai, Yideng; Yang, Wenyi; Nie, Huan; Jiang, Qinghua Share Save Single-cell transcriptome and TCR profiling reveal activated and expanded T cell populations in Parkinson's diseaseWang, Pingping; Yao, Lifen; Luo, Meng; Zhou, Wenyang; Jin, Xiyun; Xu, Zhaochun; Yan, Shi; Li, Yiqun; Xu, Chang; Cheng, Rui; Huang, Yan; Lin, Xiaoyu; Ma, Kexin; Cao, Huimin; Liu, Hongxin; Xue, Guangfu; Han, Fang; Nie, Huan; Jiang, Qinghua Share Save A pan-cancer analysis of alternative splicing of splicing factors in 6904 patientsCheng, Rui; Xiao, Lixing; Zhou, Wenyang; Jin, Xiyun; Xu, Zhaochun; Xu, Chang; Wang, Pingping; Luo, Meng; Wang, Mengyun; Ma, Kexin; Cao, Huimin; Huang, Yan; Lin, Xiaoyu; Pang, Fenglan; Li, Yiqun; Jiang, Qinghua Share Save Comprehensive analysis of partial methylation domains in colorectal cancer based on single-cell methylation profilesHuang, Yan; Wang, Pingping; Zhou, Wenyang; Luo, Meng; Xu, Zhaochun; Cheng, Rui; Xu, Chang; Jin, Xiyun; Li, Yiqun; Jiang, Qinghua Share Save 
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