Not logged inAI-driven computational methods and benchmarking for T-cell antigen identification
Deng, Yang; Que, Jinhao; Xue, Guangfu; Cai, Yideng; Yang, Wenyi; Wang, Yilin; Hui, Yi; Wang, Zuxiang; Lin, Yi; Zhou, Wenyang; Xu, Zhaochun; Jiang, Qinghua; Sun, Haoxiu
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SaveTriCLFF: a multi-modal feature fusion framework using contrastive learning for spatial domain identification
Pang, Fenglan; Xue, Guangfu; Yang, Wenyi; Cai, Yideng; Que, Jinhao; Sun, Haoxiu; Wang, Pingping; Su, Shuaiyu; Jin, Xiyun; Ding, Qian; Wang, Zuxiang; Luo, Meng; Yang, Yuexin; Lin, Yi; Tan, Renjie; Liu, Yusong; Xu, Zhaochun; Jiang, Qinghua
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SaveDimension reduction, cell clustering, and cell-cell communication inference for single-cell transcriptomics with DcjComm
Ding, Qian; Yang, Wenyi; Xue, Guangfu; Liu, Hongxin; Cai, Yideng; Que, Jinhao; Jin, Xiyun; Luo, Meng; Pang, Fenglan; Yang, Yuexin; Lin, Yi; Liu, Yusong; Sun, Haoxiu; Tan, Renjie; Wang, Pingping; Xu, Zhaochun; Jiang, Qinghua
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SaveDeciphering cell-cell communication at single-cell resolution for spatial transcriptomics with subgraph-based graph attention network
Yang, Wenyi; Wang, Pingping; Xu, Shouping; Wang, Tao; Luo, Meng; Cai, Yideng; Xu, Chang; Xue, Guangfu; Que, Jinhao; Ding, Qian; Jin, Xiyun; Yang, Yuexin; Pang, Fenglan; Pang, Boran; Lin, Yi; Nie, Huan; Xu, Zhaochun; Ji, Yong; Jiang, Qinghua
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SaveThe Deep Learning Framework iCanTCR Enables Early Cancer Detection Using the T-cell Receptor Repertoire in Peripheral Blood
Cai, Yideng; Luo, Meng; Yang, Wenyi; Xu, Chang; Wang, Pingping; Xue, Guangfu; Jin, Xiyun; Cheng, Rui; Que, Jinhao; Zhou, Wenyang; Pang, Boran; Xu, Shouping; Li, Yu; Jiang, Qinghua; Xu, Zhaochun
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SaveFunctional requirement of alternative splicing in epithelial-mesenchymal transition of pancreatic circulating tumor
Xiao, Lixing; Sun, Haoxiu; Cheng, Rui; Yang, Rongrong; Jin, Xiyun; Xu, Zhaochun; Cai, Yideng; Yang, Yuexin; Pang, Fenglan; Xue, Guangfu; Wang, Pingping; Jiang, Qinghua; Nie, Huan
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SaveIdentification of shared characteristics in tumor-infiltrating T cells across 15 cancers
Jin, Xiyun; Cai, Yideng; Xue, Guangfu; Que, Jinhao; Cheng, Rui; Yang, Yuexin; Xiao, Lixing; Lin, Xiaoyu; Xu, Chang; Wang, Pingping; Xu, Zhaochun; Nie, Huan; Jiang, Qinghua
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SaveDeepST: identifying spatial domains in spatial transcriptomics by deep learning
Xu, Chang; Jin, Xiyun; Wei, Songren; Wang, Pingping; Luo, Meng; Xu, Zhaochun; Yang, Wenyi; Cai, Yideng; Xiao, Lixing; Lin, Xiaoyu; Liu, Hongxin; Cheng, Rui; Pang, Fenglan; Chen, Rui; Su, Xi; Hu, Ying; Wang, Guohua; Jiang, Qinghua
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SaveCBLRR: a cauchy-based bounded constraint low-rank representation method to cluster single-cell RNA-seq data
Ding, Qian; Yang, Wenyi; Luo, Meng; Xu, Chang; Xu, Zhaochun; Pang, Fenglan; Cai, Yideng; Anashkina, Anastasia A.; Su, Xi; Chen, Na; Jiang, Qinghua
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SaveDLpTCR: an ensemble deep learning framework for predicting immunogenic peptide recognized by T cell receptor
Xu, Zhaochun; Luo, Meng; Lin, Weizhong; Xue, Guangfu; Wang, Pingping; Jin, Xiyun; Xu, Chang; Zhou, Wenyang; Cai, Yideng; Yang, Wenyi; Nie, Huan; Jiang, Qinghua
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