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Yideng Cai

Harbin Institute of Technology

10H-index
37Paper Count
744Citation Count
Published Papers 13
Publication Date
AI-driven computational methods and benchmarking for T-cell antigen identification
err2026-03-01
err0
PREAI
errDeng, Yang; Que, Jinhao; Xue, Guangfu; Cai, Yideng; Yang, Wenyi; Wang, Yilin; Hui, Yi; Wang, Zuxiang; Lin, Yi; Zhou, Wenyang; Xu, Zhaochun; Jiang, Qinghua; Sun, Haoxiu
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Systematic evaluation of computational methods for cell segmentation
err2026-02-24
err0
errOAAI
errRongrong Yang; Guangfu Xue; Zuxiang Wang; Yideng Cai; Wenyi Yang; Jinhao Que; Renjie Tan; Haoxiu Sun; Pingping Wang; Zhaochun Xu; Qinghua Jiang; Wenyang Zhou; null
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Charting the spatial transcriptome of the human cerebral cortex at single-cell resolution
err2025-08-19
err0
errOAAI
errSongren Wei; Meng Luo; Pingping Wang; Rui Chen; Xiyun Jin; Chang Xu; Chenyang Li; Xiaoyu Lin; Zhaochun Xu; Hongxin Liu; Rui Cheng; Wenyi Yang; Yideng Cai; Guangfu Xue; Peng Huang; Zhigang Liu; Haoxiu Sun; Jiangping Xu; Qinghua Jiang
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TriCLFF: a multi-modal feature fusion framework using contrastive learning for spatial domain identification
err2025-07-01
err1
errOAAI
errPang, Fenglan; Xue, Guangfu; Yang, Wenyi; Cai, Yideng; Que, Jinhao; Sun, Haoxiu; Wang, Pingping; Su, Shuaiyu; Jin, Xiyun; Ding, Qian; Wang, Zuxiang; Luo, Meng; Yang, Yuexin; Lin, Yi; Tan, Renjie; Liu, Yusong; Xu, Zhaochun; Jiang, Qinghua
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Dimension reduction, cell clustering, and cell-cell communication inference for single-cell transcriptomics with DcjComm
err2024-09-09
err2
errOAAI
errDing, Qian; Yang, Wenyi; Xue, Guangfu; Liu, Hongxin; Cai, Yideng; Que, Jinhao; Jin, Xiyun; Luo, Meng; Pang, Fenglan; Yang, Yuexin; Lin, Yi; Liu, Yusong; Sun, Haoxiu; Tan, Renjie; Wang, Pingping; Xu, Zhaochun; Jiang, Qinghua
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Deciphering cell-cell communication at single-cell resolution for spatial transcriptomics with subgraph-based graph attention network
err2024-08-18
err4
errOAAI
errYang, Wenyi; Wang, Pingping; Xu, Shouping; Wang, Tao; Luo, Meng; Cai, Yideng; Xu, Chang; Xue, Guangfu; Que, Jinhao; Ding, Qian; Jin, Xiyun; Yang, Yuexin; Pang, Fenglan; Pang, Boran; Lin, Yi; Nie, Huan; Xu, Zhaochun; Ji, Yong; Jiang, Qinghua
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The Deep Learning Framework iCanTCR Enables Early Cancer Detection Using the T-cell Receptor Repertoire in Peripheral Blood
err2024-03-27
err1
PREAI
errCai, Yideng; Luo, Meng; Yang, Wenyi; Xu, Chang; Wang, Pingping; Xue, Guangfu; Jin, Xiyun; Cheng, Rui; Que, Jinhao; Zhou, Wenyang; Pang, Boran; Xu, Shouping; Li, Yu; Jiang, Qinghua; Xu, Zhaochun
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Functional requirement of alternative splicing in epithelial-mesenchymal transition of pancreatic circulating tumor
err2024-03-01
err0
errOAAI
errXiao, Lixing; Sun, Haoxiu; Cheng, Rui; Yang, Rongrong; Jin, Xiyun; Xu, Zhaochun; Cai, Yideng; Yang, Yuexin; Pang, Fenglan; Xue, Guangfu; Wang, Pingping; Jiang, Qinghua; Nie, Huan
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Identification of shared characteristics in tumor-infiltrating T cells across 15 cancers
err2023-06-01
err8
errOAAI
errJin, Xiyun; Cai, Yideng; Xue, Guangfu; Que, Jinhao; Cheng, Rui; Yang, Yuexin; Xiao, Lixing; Lin, Xiaoyu; Xu, Chang; Wang, Pingping; Xu, Zhaochun; Nie, Huan; Jiang, Qinghua
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DeepST: identifying spatial domains in spatial transcriptomics by deep learning
err2022-10-17
err74
errOAAI
errXu, Chang; Jin, Xiyun; Wei, Songren; Wang, Pingping; Luo, Meng; Xu, Zhaochun; Yang, Wenyi; Cai, Yideng; Xiao, Lixing; Lin, Xiaoyu; Liu, Hongxin; Cheng, Rui; Pang, Fenglan; Chen, Rui; Su, Xi; Hu, Ying; Wang, Guohua; Jiang, Qinghua
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CBLRR: a cauchy-based bounded constraint low-rank representation method to cluster single-cell RNA-seq data
err2022-07-24
err6
PREAI
errDing, Qian; Yang, Wenyi; Luo, Meng; Xu, Chang; Xu, Zhaochun; Pang, Fenglan; Cai, Yideng; Anashkina, Anastasia A.; Su, Xi; Chen, Na; Jiang, Qinghua
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DLpTCR: an ensemble deep learning framework for predicting immunogenic peptide recognized by T cell receptor
err2021-08-20
err61
PREAI
errXu, Zhaochun; Luo, Meng; Lin, Weizhong; Xue, Guangfu; Wang, Pingping; Jin, Xiyun; Xu, Chang; Zhou, Wenyang; Cai, Yideng; Yang, Wenyi; Nie, Huan; Jiang, Qinghua
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