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Casey Ta

Columbia University

18H-index
91Paper Count
1.1KCitation Count
Published Papers 24
Publication Date
A neural-symbolic AI agent system for biomedical concept mapping
err2026-04-04
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errOAAI
errGongbo Zhang; Yilu Fang; Fangyi Chen; Casey Ta; George Hripcsak; Patrick Ryan; Yifan Peng; Chunhua Weng
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A method for characterizing disease progression from acute kidney injury to chronic kidney disease
err2025-11-12
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PREAI
errYilu Fang; Jordan G. Nestor; Casey N. Ta; Jerard Z. Kneifati-Hayek; Chunhua Weng
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Scalable scientific interest profiling using large language models
err2025-11-01
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PREAI
errYilun Liang; Gongbo Zhang; Edward Sun; Betina Idnay; Yilu Fang; Fangyi Chen; Casey Ta; Yifan Peng; Chunhua Weng
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Implementing integrated genomic risk assessments for breast cancer: lessons learned from the Electronic Medical Records and Genomics study
err2025-10-01
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PREAI
errLiu, Cong; Crew, Katherine D.; Morse, Jennifer; Linder, Jodell E.; Antoniou, Antonis C.; Carver, Tim; Cortopassi, Josh; Peterson, Josh F.; Ta, Casey N.; Hoell, Christin; Prows, Cynthia; Kenny, Eimear E.; Miller, Emily; Perez, Emma; Jarvik, Gail P.; Bland, Harris T.; Odgis, Jacqueline A.; Mittendorf, Kathleen F.; Bonini, Katherine E.; McGuffin, Kyle; Kottyan, Leah C.; Maradik, Mary; Limdi, Nita; Abul-Husn, Noura S.; Marathe, Priya N.; Suckiel, Sabrina A.; Aguilar, Sienna; Lewis, Toni J.; Wei, Wei-Qi; Luo, Yuan; Freimuth, Robert R.; Hakonarson, Hakon; Weng, Chunhua; Chung, Wendy K.; Wiesner, Georgia L.
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Announcing the Biomedical Data Translator: Initial Public Release
err2025-07-09
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errKaramarie Fecho; Gwênlyn Glusman; Sergio E. Baranzini; Chris Bizon; Matthew Brush; William Byrd; Lawrence Chung; Andrew Crouse; Eric Deutsch; Michel Dumontier; Aleksandra Foksinska; Jennifer Hadlock; Kaiwen He; Sui Huang; Robert Hubal; Gregory M. Hyde; Sharat Israni; Kelyne Kenmogne; David Koslicki; Jana Dorfman Marcette; Ewy A. Mathe; Abrar Mesbah; Sierra A. T. Moxon; Christopher J. Mungall; John Osborne; Carrie Pasfield; Guangrong Qin; Stephen A. Ramsey; Justin Reese; Jared C. Roach; Reese Rose; Karthik Soman; Andrew I. Su; Casey Ta; Gaurav Vaidya; Rosina Weber; Qi Wei; Mark Williams; Chunlei Wu; Colleen Xu; Chase Yakaboski; The Biomedical Data Translator Consortium
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Phenotype driven molecular genetic test recommendation for diagnosing pediatric rare disorders
err2024-11-21
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errChen, Fangyi; Ahimaz, Priyanka; Nguyen, Quan M.; Lewis, Rachel; Chung, Wendy K.; Ta, Casey N.; Szigety, Katherine M.; Sheppard, Sarah E.; Campbell, Ian M.; Wang, Kai; Weng, Chunhua; Liu, Cong
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Converting OMOP CDM to phenopackets: A model alignment and patient data representation evaluation
err2024-07-01
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PREAI
errSchiffer-Kane, Kayla; Liu, Cong; Callahan, Tiffany J.; Ta, Casey; Nestor, Jordan G.; Weng, Chunhua
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Criteria2Query 3.0: Leveraging generative large language models for clinical trial eligibility query generation
err2024-06-01
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PREAI
errPark, Jimyung; Fang, Yilu; Ta, Casey; Zhang, Gongbo; Idnay, Betina; Chen, Fangyi; Feng, David; Shyu, Rebecca; Gordon, Emily R.; Spotnitz, Matthew; Weng, Chunhua
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A data-driven approach to optimizing clinical study eligibility criteria
err2023-06-01
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errOAAI
errFang, Yilu; Liu, Hao; Idnay, Betina; Ta, Casey; Marder, Karen; Weng, Chunhua
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OARD: Open annotations for rare diseases and their phenotypes based on real-world data
err2022-09-01
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errLiu, Cong; Ta, Casey N.; Havrilla, Jim M.; Nestor, Jordan G.; Spotnitz, Matthew E.; Geneslaw, Andrew S.; Hu, Yu; Chung, Wendy K.; Wang, Kai; Weng, Chunhua
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Progress toward a universal biomedical data translator
err2022-06-06
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errFecho, Karamarie; Thessen, Anne E.; Baranzini, Sergio E.; Bizon, Chris; Hadlock, Jennifer J.; Huang, Sui; Roper, Ryan T.; Southall, Noel; Ta, Casey; Watkins, Paul B.; Williams, Mark D.; Xu, Hao; Byrd, William; Dancik, Vlado; Duby, Marc P.; Dumontier, Michel; Glusman, Gustavo; Harris, Nomi L.; Hinderer, Eugene W.; Hyde, Greg; Johs, Adam; Su, Andrew, I; Qin, Guangrong; Zhu, Qian
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Risk Factors Associated With SARS-CoV-2 Breakthrough Infections in Fully mRNA-Vaccinated Individuals: Retrospective Analysis
err2022-05-24
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errOAAI
errLiu, Cong; Lee, Junghwan; Ta, Casey; Soroush, Ali; Rogers, James R.; Kim, Jae Hyun; Natarajan, Karthik; Zucker, Jason; Perl, Yehoshua; Weng, Chunhua
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Leveraging electronic health record data for clinical trial planning by assessing eligibility criteria's impact on patient count and safety
err2022-03-01
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errOAAI
errRogers, James R.; Pavisic, Jovana; Ta, Casey N.; Liu, Cong; Soroush, Ali; Cheung, Ying Kuen; Hripcsak, George; Weng, Chunhua
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The potential role of EHR data in optimizing eligibility criteria definition for cardiovascular outcome trials
err2021-12-01
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errKim, Jae Hyun; Butler, Alex M.; Ta, Casey N.; Sun, Yingcheng; Maurer, Mathew S.; Weng, Chunhua
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Columbia Open Health Data for COVID-19 Research: Database Analysis
err2021-09-30
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errLee, Junghwan; Kim, Jae Hyun; Liu, Cong; Hripcsak, George; Natarajan, Karthik; Ta, Casey; Weng, Chunhua
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Sex, obesity, diabetes, and exposure to particulate matter among patients with severe asthma: Scientific insights from a comparative analysis of open clinical data sources during a five-day hackathon
err2019-12-01
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errFecho, Karamarie; Ahalt, Stanley C.; Arunachalam, Saravanan; Champion, James; Chute, Christopher G.; Davis, Sarah; Gersing, Kenneth; Glusman, Gustavo; Hadlock, Jennifer; Lee, Jewel; Pfaff, Emily; Robinson, Max; Sid, Eric; Ta, Casey; Xu, Hao; Zhu, Richard; Zhu, Qian; Peden, David B.
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Ensembles of natural language processing systems for portable phenotyping solutions
err2019-12-01
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errLiu, Cong; Ta, Casey N.; Rogers, James R.; Li, Ziran; Lee, Junghwan; Butler, Alex M.; Shang, Ning; Kury, Fabricio Sampaio Peres; Wang, Liwei; Shen, Feichen; Liu, Hongfang; Ena, Lyudmila; Friedman, Carol; Weng, Chunhua
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Making work visible for electronic phenotype implementation: Lessons learned from the eMERGE network
err2019-11-01
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errShang, Ning; Liu, Cong; Rasmussen, Luke, V; Ta, Casey N.; Caroll, Robert J.; Benoit, Barbara; Lingren, Todd; Dikilitas, Ozan; Mentch, Frank D.; Carrell, David S.; Wei, Wei-Qi; Luo, Yuan; Gainer, Vivian S.; Kullo, Iftikhar J.; Pacheco, Jennifer A.; Hakonarson, Hakon; Walunas, Theresa L.; Denny, Joshua C.; Wiley, Ken; Murphy, Shawn N.; Hripcsak, George; Weng, Chunhua
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Doc2Hpo: a web application for efficient and accurate HPO concept curation
err2019-05-20
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errLiu, Cong; Kury, Fabricio Sampaio Peres; Li, Ziran; Ta, Casey; Wang, Kai; Weng, Chunhua
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Clinical Data: Sources and Types, Regulatory Constraints, Applications
err2019-05-09
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errAhalt, Stanley C.; Chute, Christopher G.; Fecho, Karamarie; Glusman, Gustavo; Hadlock, Jennifer; Taylor, Casey Overby; Pfaff, Emily R.; Robinson, Peter N.; Solbrig, Harold; Ta, Casey; Tatonetti, Nicholas; Weng, Chunhua; Bizon, Chris; Cox, Steve; Krishnamurthy, Ashok; Stillwell, Lisa; Xu, Hao; Champion, James; Peden, David B.; Arunachalam, Sarav; Robinson, Max; Rensi, Stefano
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