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D

Daniel Domingo‐Fernándéz

enveda therapeutics

22H-index
144Paper Count
1.5KCitation Count
Published Papers 33
Publication Date
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Trends in Computational Metabolomics: A Perspective on Five Years of Software Development; Challenges; and Opportunities (2021–2025)
errAnalytical Chemistry
IF6.7
err2026-05-31
err0
errOAAI
errDaniel Domingo-Fernández; David Healey; Tobias Kind; August Allen; Viswa Colluru; Biswapriya Biswavas Misra
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errSave
Structure characterization with NMR molecular networking
errCommunications Chemistry
IF6.2
err2025-12-17
err0
errOAAI
errCailum M. K. Stienstra; Jaegun Song; David Healey; Gennady Voronov; Eric Gardner; Abhishek Patel; Venkat Macherla; Christoph A. Krettler; Tobias Kind; Pieter C. Dorrestein; Daniel Domingo-Fernández
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Chr:17q21.31 locus risk haplotype H1 susceptibility to ferroptosis is mediated by endolysosomal pathway
errCell Death & Disease
IF9.6
err2025-11-13
err0
errOAAI
errEldem Sadikoglou; Daniel Domingo-Fernández; Natalia Savytska; Noemia Fernandes; Patrizia Rizzu; Anastasia Illarionova; Tabea Strauß; Sigrid C. Schwarz; Alpha Kodamullil; Günter U. Höglinger; Ashutosh Dhingra; Thomas Gasser; Peter Heutink
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errSave
OmniPath: integrated knowledgebase for multi-omics analysis
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-11-01
err1
errOAAI
errTurei, Denes; Schaul, Jonathan; Palacio-Escat, Nicolas; Bohar, Balazs; Bai, Yunfan; Ceccarelli, Francesco; Cevrim, Elif; Daley, Macabe; Darcan, Melih; Dimitrov, Daniel; Dogan, Tunca; Domingo-Fernandez, Daniel; Dugourd, Aurelien; Gabor, Attila; Gul, Lejla; Hall, Benjamin A.; Hoyt, Charles Tapley; Ivanova, Olga; Klein, Michal; Lawrence, Toby; Mananes, Diego; Modos, Dezso; Muller-Dott, Sophia; Olbei, Marton; Schmidt, Christina; Sen, Bunyamin; Theis, Fabian J.; Unlu, Atabey; Ulusoy, Erva; Valdeolivas, Alberto; Korcsmaros, Tamas; Saez-Rodriguez, Julio
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errSave
Multi-omics data integration identifies novel biomarkers and patient subgroups in inflammatory bowel disease
errJOURNAL OF CROHNS & COLITIS
IF8.7
err2025-01-04
err1
errOAAI
errPreto, Antonio Jose; Chanana, Shaurya; Ence, Daniel; Healy, Matthew D.; Domingo-Fernandez, Daniel; West, Kiana A.
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errSave
Evaluating the generalizability of graph neural networks for predicting collision cross section
errJOURNAL OF CHEMINFORMATICS
IF5.7
err2024-08-29
err0
errOAAI
errEngler Hart, Chloe; Preto, Antonio Jose; Chanana, Shaurya; Healey, David; Kind, Tobias; Domingo-Fernandez, Daniel
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errSave
Natural Products Have Increased Rates of Clinical Trial Success throughout the Drug Development Process
errJOURNAL OF NATURAL PRODUCTS
IF3.6
err2024-07-06
err13
errOAAI
errDomingo-Fernandez, Daniel; Gadiya, Yojana; Preto, Antonio; Krettler, Christoph A.; Mubeen, Sarah; Allen, August; Healey, David; Colluru, Viswa
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errSave
Weighting Low-Intensity MS/MS Ions and m/z Frequency for Spectral Library Annotation
errJOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
IF2.7
err2024-01-25
err0
errOAAI
errHart, Chloe Engler; Kind, Tobias; Dorrestein, Pieter C.; Healey, David; Domingo-Fernandez, Daniel
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errSave
Data-Driven Thresholding Statistically Biases ATN Profiling across Cohort Datasets
errJPAD-JOURNAL OF PREVENTION OF ALZHEIMERS DISEASE
IF7.8
err2024-01-01
err1
errOAAI
errSalimi, Y.; Domingo-Fernandez, D.; Hofmann-Apitius, M.; Birkenbihl, C.
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errSave
Exploring the known chemical space of the plant kingdom: insights into taxonomic patterns, knowledge gaps, and bioactive regions
errJOURNAL OF CHEMINFORMATICS
IF5.7
err2023-11-10
err6
errOAAI
errDomingo-Fernandez, Daniel; Gadiya, Yojana; Mubeen, Sarah; Healey, David; Norman, Bryan H.; Colluru, Viswa
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errSave
Multi-ontology embeddings approach on human-aligned multi-ontologies representation for gene-disease associations prediction
errHELIYON
IF3.6
err2023-11-01
err0
errOAAI
errWang, Yihao; Wegner, Philipp; Domingo-Fernandez, Daniel; Kodamullil, Alpha Tom
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errSave
MultiGML: Multimodal graph machine learning for prediction of adverse drug events
errHELIYON
IF3.6
err2023-09-01
err6
errOAAI
errKrix, Sophia; Delong, Lauren Nicole; Madan, Sumit; Domingo-Fernandez, Daniel; Ahmad, Ashar; Gul, Sheraz; Zaliani, Andrea; Froehlich, Holger
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errSave
Integrative analysis to identify shared mechanisms between schizophrenia and bipolar disorder and their comorbidities
errPROGRESS IN NEURO-PSYCHOPHARMACOLOGY & BIOLOGICAL PSYCHIATRY
IF3.9
err2023-03-01
err6
errOAAI
errBharadhwaj, Vinay Srinivas; Mubeen, Sarah; Sargsyan, Astghik; Jose, Geena Mariya; Geissler, Stefan; Hofmann-Apitius, Martin; Domingo-Fernandez, Daniel; Kodamullil, Alpha Tom
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errSave
Ensembles of knowledge graph embedding models improve predictions for drug discovery
errBRIEFINGS IN BIOINFORMATICS
IF7.7
err2022-11-16
err6
errOAAI
errRivas-Barragan, Daniel; Domingo-Fernandez, Daniel; Gadiya, Yojana; Healey, David
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errSave
Exploring the Complex Network of Heme-Triggered Effects on the Blood Coagulation System
errJOURNAL OF CLINICAL MEDICINE
IF2.9
err2022-10-10
err3
errOAAI
errMubeen, Sarah; Domingo-Fernandez, Daniel; Diaz del Ser, Sara; Solanki, Dhwani M.; Kodamullil, Alpha T.; Hofmann-Apitius, Martin; Hopp, Marie-T; Imhof, Diana
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errSave
ADataViewer: exploring semantically harmonized Alzheimer's disease cohort datasets
errALZHEIMERS RESEARCH & THERAPY
IF7.6
err2022-05-21
err9
errOAAI
errSalimi, Yasamin; Domingo-Fernandez, Daniel; Bobis-Alvarez, Carlos; Hofmann-Apitius, Martin; Birkenbihl, Colin
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errSave
On the influence of several factors on pathway enrichment analysis
errBRIEFINGS IN BIOINFORMATICS
IF7.7
err2022-04-23
err18
errOAAI
errMubeen, Sarah; Kodamullil, Alpha Tom; Hofmann-Apitius, Martin; Domingo-Fernandez, Daniel
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errSave
Using predictive machine learning models for drug response simulation by calibrating patient-specific pathway signatures
errNPJ SYSTEMS BIOLOGY AND APPLICATIONS
IF3.5
err2021-10-27
err7
errOAAI
errKhatami, Sepehr Golriz; Mubeen, Sarah; Bharadhwaj, Vinay Srinivas; Kodamullil, Alpha Tom; Hofmann-Apitius, Martin; Domingo-Fernandez, Daniel
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errSave
DecoPath: a web application for decoding pathway enrichment analysis
errgenomics proteomics bioinformatics
IF2.8
err2021-09-23
err3
errOAAI
errMubeen, Sarah; Bharadhwaj, Vinay S.; Gadiya, Yojana; Hofmann-Apitius, Martin; Kodamullil, Alpha T.; Domingo-Fernandez, Daniel
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errSave
Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms
errNUCLEIC ACIDS RESEARCH
IF13.1
err2021-07-01
err3
errOAAI
errFigueiredo, Rebeca Queiroz; Raschka, Tamara; Kodamullil, Alpha Tom; Hofmann-Apitius, Martin; Mubeen, Sarah; Domingo-Fernandez, Daniel
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Research Directions

No research directions
Co-authors
Cooperation Journals
R
Roland Eils
H-index: 138 · Papers: 1.1K
T
Thomas Gasser
H-index: 137 · Papers: 1.4K
F
Fabian J. Theis
H-index: 125 · Papers: 1.1K
P
Pieter C. Dorrestein
H-index: 122 · Papers: 872
S
Simon Lovestone
H-index: 117 · Papers: 892
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