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Walter L. Ruzzo

University of Copenhagen

47H-index
140Paper Count
1.3WCitation Count
Published Papers 28
Publication Date
Does rapid sequence divergence preclude RNA structure conservation in vertebrates?
err2022-02-21
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errSeemann, Stefan E.; Mirza, Aashiq H.; Bang-Berthelsen, Claus H.; Garde, Christian; Christensen-Dalsgaard, Mikkel; Workman, Christopher T.; Pociot, Flemming; Tommerup, Niels; Gorodkin, Jan; Ruzzo, Walter L.
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Metabolic Control over mTOR-Dependent Diapause-like State
err2020-01-01
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errHussein, Abdiasis M.; Wang, Yuliang; Mathieu, Julie; Margaretha, Lilyana; Song, Chaozhong; Jones, Daniel C.; Cavanaugh, Christopher; Miklas, Jason W.; Mahen, Elisabeth; Showalter, Megan R.; Ruzzo, Walter L.; Fiehn, Oliver; Ware, Carol B.; Blau, C. Anthony; Ruohola-Baker, Hannele
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Identification and characterization of novel conserved RNA structures in Drosophila
err2018-12-11
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errKirsch, Rebecca; Seemann, Stefan E.; Ruzzo, Walter L.; Cohen, Stephen M.; Stadler, Peter F.; Gorodkin, Jan
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Sexual ancestors generated an obligate asexual and globally dispersed clone within the model diatom species Thalassiosira pseudonana
err2018-07-12
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errKoester, Julie A.; Berthiaume, Chris T.; Hiranuma, Naozumi; Parker, Micaela S.; Iverson, Vaughn; Morales, Rhonda; Ruzzo, Walter L.; Armbrust, E. Virginia
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Chromatin and Transcriptional Analysis of Mesoderm Progenitor Cells Identifies HOPX as a Regulator of Primitive Hematopoiesis
err2017-08-01
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errPalpant, Nathan J.; Wang, Yuliang; Hadland, Brandon; Zaunbrecher, Rebecca J.; Redd, Meredith; Jones, Daniel; Pabon, Lil; Jain, Rajan; Epstein, Jonathan; Ruzzo, Walter L.; Zheng, Ying; Bernstein, Irwin; Margolin, Adam; Murry, Charles E.
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Associating transcription factors and conserved RNA structures with gene regulation in the human brain
err2017-07-18
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errHecker, Nikolai; Seemann, Stefan E.; Silahtaroglu, Asli; Ruzzo, Walter L.; Gorodkin, Jan
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The identification and functional annotation of RNA structures conserved in vertebrates
err2017-05-09
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errSeemann, Stefan E.; Mirza, Aashiq H.; Hansen, Claus; Bang-Berthelsen, Claus H.; Garde, Christian; Christensen-Dalsgaard, Mikkel; Torarinsson, Elfar; Yao, Zizhen; Workman, Christopher T.; Pociot, Flemming; Nielsen, Henrik; Tommerup, Niels; Ruzzo, Walter L.; Gorodkin, Jan
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Let-7 family of microRNA is required for maturation and adult-like metabolism in stem cell-derived cardiomyocytes
err2015-05-11
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errKuppusamy, Kavitha T.; Jones, Daniel C.; Sperber, Henrik; Madan, Anup; Fischer, Karin A.; Rodriguez, Marita L.; Pabon, Lil; Zhu, Wei-Zhong; Tulloch, Nathaniel L.; Yang, Xiulan; Sniadecki, Nathan J.; Laflamme, Michael A.; Ruzzo, Walter L.; Murry, Charles E.; Ruohola-Baker, Hannele
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Inhibition of β-catenin signaling respecifies anterior-like endothelium into beating human cardiomyocytes
err2015-01-01
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errPalpant, Nathan J.; Pabon, Lil; Roberts, Meredith; Hadland, Brandon; Jones, Daniel; Jones, Christina; Moon, Randall T.; Ruzzo, Walter L.; Bernstein, Irwin; Zheng, Ying; Murry, Charles E.
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Compression of next-generation sequencing reads aided by highly efficient de novo assembly
err2012-08-13
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errJones, Daniel C.; Ruzzo, Walter L.; Peng, Xinxia; Katze, Michael G.
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Transcripts with in silico predicted RNA structure are enriched everywhere in the mouse brain
err2012-05-31
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errSeemann, Stefan E.; Sunkin, Susan M.; Hawrylycz, Michael J.; Ruzzo, Walter L.; Gorodkin, Jan
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Genetic and Epigenetic Determinants of Neurogenesis and Myogenesis
err2012-04-01
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errFong, Abraham P.; Yao, Zizhen; Zhong, Jun Wen; Cao, Yi; Ruzzo, Walter L.; Gentleman, Robert C.; Tapscott, Stephen J.
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DUX4 Activates Germ line Genes, Retroelements, and Immune Mediators: Implications for Facioscapulohumeral Dystrophy
err2012-01-01
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errGeng, Linda N.; Yao, Zizhen; Snider, Lauren; Fong, Abraham P.; Cech, Jennifer N.; Young, Janet M.; van der Maarel, Silvere M.; Ruzzo, Walter L.; Gentleman, Robert C.; Tawil, Rabi; Tapscott, Stephen J.
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An integrative genomic approach identifies p73 and p63 as activators of miR-200 microRNA family transcription
err2011-09-14
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errKnouf, Emily C.; Garg, Kavita; Arroyo, Jason D.; Correa, Yesenia; Sarkar, Deepayan; Parkin, Rachael K.; Wurz, Kaitlyn; O'Briant, Kathy C.; Godwin, Andrew K.; Urban, Nicole D.; Ruzzo, Walter L.; Gentleman, Robert; Drescher, Charles W.; Swisher, Elizabeth M.; Tewari, Muneesh
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Genome-wide MyoD Binding in Skeletal Muscle Cells: A Potential for Broad Cellular Reprogramming
err2010-04-01
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errCao, Yi; Yao, Zizhen; Sarkar, Deepayan; Lawrence, Michael; Sanchez, Gilson J.; Parker, Maura H.; MacQuarrie, Kyle L.; Davison, Jerry; Morgan, Martin T.; Ruzzo, Walter L.; Gentleman, Robert C.; Tapscott, Stephen J.
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De novo prediction of structured RNAs from genomic sequences
err2010-01-01
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errGorodkin, Jan; Hofacker, Ivo L.; Torarinsson, Elfar; Yao, Zizhen; Havgaard, Jakob H.; Ruzzo, Walter L.
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MicroRNA Discovery and Profiling in Human Embryonic Stem Cells by Deep Sequencing of Small RNA Libraries
err2008-06-26
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errBar, Merav; Wyman, Stacia K.; Fritz, Brian R.; Qi, Junlin; Garg, Kavita S.; Parkin, Rachael K.; Kroh, Evan M.; Bendoraite, Ausra; Mitchell, Patrick S.; Nelson, Angelique M.; Ruzzo, Walter L.; Ware, Carol; Radich, Jerald P.; Gentleman, Robert; Ruohola-Baker, Hannele; Tewari, Muneesh
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The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches
errRNA
IF5
err2008-03-27
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errWeinberg, Zasha; Regulski, Elizabeth E.; Hammond, Ming C.; Barrick, Jeffrey E.; Yao, Zizhen; Ruzzo, Walter L.; Breaker, Ronald R.
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