Jacob Hughey - Publications, H-index & Citations

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Jacob Hughey

vanderbilt university

26H-index

147Paper Count

4.2KCitation Count

Published Papers 21

Publication Date

Blood Clock Correlation Distance (BloodCCD) as a novel marker to detect circadian rhythm disruption in cancer survivors with insomnia

BJC REPORTS

IF0

2025-09-03

OAAI

Altman, Brian J.; Lin, Po-Ju; Mattick, Lindsey J.; Outland, Elliot H.; Bautista, Javier; Li, Chin-Shang; Gada, Umang; Morris, Kristina M.; Knudsen-Clark, Amelia M.; Mwangi, Daniel; Derollo, Rachel E.; Kleckner, Amber S.; Kleckner, Ian R.; Gilmore, Nikesha J.; Esparaz, Benjamin T.; Curtis, Amarinthia; Conlin, Alison; Monaco, Gianni; Hughey, Jacob J.; Mustian, Karen M.

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The phenotype-genotype reference map: Improving biobank data science through replication

AMERICAN JOURNAL OF HUMAN GENETICS

IF8.1

2023-09-01

OAAI

Bastarache, Lisa; Delozier, Sarah; Pandit, Anita; He, Jing; Lewis, Adam; Annis, Aubrey C.; Lefaive, Jonathon; Denny, Joshua C.; Carroll, Robert J.; Altman, Russ B.; Hughey, Jacob J.; Zawistowski, Matthew; Peterson, Josh F.

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The Role of Electronic Health Records in Advancing Genomic Medicine

ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, VOL 22, 2021

IF0

2021-08-31

OAAI

Linder, Jodell E.; Bastarache, Lisa; Hughey, Jacob J.; Peterson, Josh F.

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Automated quality control and cell identification of droplet-based single-cell data using dropkick

GENOME RESEARCH

IF5.5

2021-04-09

OAAI

Heiser, Cody N.; Wang, Victoria M.; Chen, Bob; Hughey, Jacob J.; Lau, Ken S.

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Releasing a preprint is associated with more attention and citations for the peer-reviewed article

ELIFE

IF0

2019-12-06

OAAI

Fu, Darwin Y.; Hughey, Jacob J.

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Discovering Cross-Reactivity in Urine Drug Screening Immunoassays through Large-Scale Analysis of Electronic Health Records

CLINICAL CHEMISTRY

IF6.3

2019-12-01

OAAI

Hughey, Jacob J.; Colby, Jennifer M.

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Cox regression increases power to detect genotype-phenotype associations in genomic studies using the electronic health record

BMC GENOMICS

IF3.7

2019-11-04

OAAI

Hughey, Jacob J.; Rhoades, Seth D.; Fu, Darwin Y.; Bastarache, Lisa; Denny, Joshua C.; Chen, Qingxia

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NF-κB signaling dynamics is controlled by a dose-sensing autoregulatory loop

SCIENCE SIGNALING

IF6.6

2019-04-30

OAAI

DeFelice, Mialy M.; Clark, Helen R.; Hughey, Jacob J.; Maayan, Inbal; Kudo, Takamasa; Gutschow, Miriam V.; Covert, Markus W.; Regot, Sergi

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Combinatorial processing of bacterial and host-derived innate immune stimuli at the single-cell level

MOLECULAR BIOLOGY OF THE CELL

IF2.7

2019-01-15

OAAI

Gutschow, Miriam V.; Mason, John C.; Lane, Keara M.; Maayan, Inbal; Hughey, Jacob J.; Bajar, Bryce T.; Amatya, Debha N.; Valle, Sean D.; Covert, Markus W.

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Population-level rhythms in human skin with implications for circadian medicine

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2018-10-30

OAAI

Wu, Gang; Ruben, Marc D.; Schmidt, Robert E.; Francey, Lauren J.; Smith, David F.; Anafi, Ron C.; Hughey, Jacob J.; Tasseff, Ryan; Sherrill, Joseph D.; Oblong, John E.; Mills, Kevin J.; Hogenesch, John B.

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MetaCyto: A Tool for Automated Meta-analysis of Mass and Flow Cytometry Data

CELL REPORTS

IF6.9

2018-07-01

OAAI

Hu, Zicheng; Jujjavarapu, Chethan; Hughey, Jacob J.; Andorf, Sandra; Lee, Hao-Chih; Gherardini, Pier Federico; Spitzer, Matthew H.; Thomas, Cristel G.; Campbell, John; Dunn, Patrick; Wiser, Jeff; Kidd, Brian A.; Dudley, Joel T.; Nolan, Garry P.; Bhattacharya, Sanchita; Butte, Atul J.

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Live-cell measurements of kinase activity in single cells using translocation reporters

NATURE PROTOCOLS

IF16

2017-12-21

PREAI

Kudo, Takamasa; Jeknic, Stevan; Macklin, Derek N.; Akhter, Sajia; Hughey, Jacob J.; Regot, Sergi; Covert, Markus W.

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SELF-REPORTED DIETARY ADHERENCE, DISEASE-SPECIFIC SYMPTOMS, AND QUALITY OF LIFE ARE ASSOCIATED WITH HEALTHCARE PROVIDER FOLLOW-UP IN CELIAC DISEASE

GASTROENTEROLOGY

IF25.1

2017-04-01

PREAI

Hughey, Jacob J.; Ray, Bonnie K.; Lee, Anne R.; Kelly, Ciaran P.; Schuppan, Detlef; Voorhees, Kristin N.

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Machine learning identifies a compact gene set for monitoring the circadian clock in human blood

GENOME MEDICINE

IF11.2

2017-02-28

OAAI

Hughey, Jacob J.

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Is the crowd better as an assistant or a replacement in ontology engineering? An exploration through the lens of the Gene Ontology

JOURNAL OF BIOMEDICAL INFORMATICS

IF4.5

2016-04-01

OAAI

Mortensen, Jonathan M.; Telis, Natalie; Hughey, Jacob J.; Fan-Minogue, Hua; Van Auken, Kimberly; Dumontier, Michel; Musen, Mark A.

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ZeitZeiger: supervised learning for high-dimensional data from an oscillatory system

NUCLEIC ACIDS RESEARCH

IF13.1

2016-01-26

OAAI

Hughey, Jacob J.; Hastie, Trevor; Butte, Atul J.

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Robust meta-analysis of gene expression using the elastic net

NUCLEIC ACIDS RESEARCH

IF13.1

2015-03-31

OAAI

Hughey, Jacob J.; Butte, Atul J.

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Single-cell variation leads to population invariance in NF-κB signaling dynamics

MOLECULAR BIOLOGY OF THE CELL

IF2.7

2015-02-01

OAAI

Hughey, Jacob J.; Gutschow, Miriam V.; Bajar, Bryce T.; Covert, Markus W.

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The microfluidic multitrap nanophysiometer for hematologic cancer cell characterization reveals temporal sensitivity of the calcein-AM efflux assay

SCIENTIFIC REPORTS

IF3.9

2014-05-30

OAAI

Byrd, Thomas F.; Hoang, Loi T.; Kim, Eric G.; Pfister, Matthew E.; Werner, Erik M.; Arndt, Stephen E.; Chamberlain, Jeffrey W.; Hughey, Jacob J.; Nguyen, Bao A.; Schneibel, Erik J.; Wertz, Laura L.; Whitfield, Jonathan S.; Wikswo, John P.; Seale, Kevin T.

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A Noisy Paracrine Signal Determines the Cellular NF-κB Response to Lipopolysaccharide

SCIENCE SIGNALING

IF6.6

2009-10-20

158

OAAI

Lee, Timothy K.; Denny, Elissa M.; Sanghvi, Jayodita C.; Gaston, Jahlionais E.; Maynard, Nathaniel D.; Hughey, Jacob J.; Covert, Markus W.

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Research Directions