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Brittany Rife Magalis

university of louisville

18H-index
70Paper Count
1.7KCitation Count
Published Papers 22
Publication Date
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The limits of sequence-based biosecurity screening tools in the age of AI-assisted protein design
errFrontiers in Bioengineering and Biotechnology
IF4.8
err2026-07-26
err0
errOAAI
errBJ Bruce J. Wittmann; NE Nicole E. Wheeler † ‡; ST Steven T. Murphy ‡; TM Tom Mitchell ‡; BR Brittany Rife Magalis ‡; BT Bryan T. Gemler ‡; KF Kevin Flyangolts ‡; JD James Diggans ‡; AC Adam Clore ‡; JB Jacob Beal ‡; CB Craig Bartling ‡; TA Tessa Alexanian ‡; EH Eric Horvitz
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Beyond sequence similarity: toward function-based screening of nucleic acid synthesis
errFrontiers in Bioengineering and Biotechnology
IF4.8
err2026-05-14
err0
errOAAI
errGR Gary R. Abel Jr; TA Tessa Alexanian; CB Craig Bartling; JB Jacob Beal; SC Samuel Curtis; KF Kevin Flyangolts; LF Leonard Foner; SP Samuel P. Forry; GD Gene D. Godbold; EH Eric Horvitz; BH Bin Hu; CM Corey M. Hudson; CJ Caitlin Jagla; RL Rassin Lababidi; SL Sheng Lin-Gibson; BR Brittany Rife Magalis; JP Jaspreet Pannu; SR Sebastian Rivera; DR David Ross; BJ Bruce J. Wittmann; JD James Diggans
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errSave
Exploring cooperation among social pathogens: a computational perspective
errFEMS Microbiology Reviews
IF12.3
err2026-01-01
err0
PREAI
errRamirez-Mata, Andrea S.; Browne, Cameron; Doster, Ryan S.; Salemi, Marco; Magalis, Brittany Rife
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Machine Learning Prediction and Phyloanatomic Modeling of Viral Neuroadaptive Signatures in the Macaque Model of HIV-Mediated Neuropathology
errMICROBIOLOGY SPECTRUM
IF3.8
err2023-04-13
err0
errOAAI
errRamirez-Mata, Andrea S.; Ostrov, David; Salemi, Marco; Marini, Simone; Magalis, Brittany Rife
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errSave
Lessons Learned and Yet-to-Be Learned on the Importance of RNA Structure in SARS-CoV-2 Replication
errMICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
IF7.8
err2022-09-21
err7
errOAAI
errBassett, Maclean; Salemi, Marco; Magalis, Brittany Rife
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errSave
Low-frequency variants in mildly symptomatic vaccine breakthrough infections presents a doubled-edged sword
errJOURNAL OF MEDICAL VIROLOGY
IF4.6
err2022-04-13
err5
errOAAI
errMagalis, Brittany R.; Mavian, Carla; Tagliamonte, Massimiliano; Rich, Shannan N.; Cash, Melanie; Riva, Alberto; Loeb, Julia C.; Norris, Michael; Amador, David M.; Zhang, Yanping; Shapiro, Jerne; Starostik, Petr; Marini, Simone; Myers, Paul; Ostrov, David A.; Lednicky, John A.; Morris, J. Glenn, Jr.; Lauzardo, Michael; Salemi, Marco
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errSave
Early Emergence Phase of SARS-CoV-2 Delta Variant in Florida, US
errVIRUSES-BASEL
IF3.5
err2022-04-06
err5
errOAAI
errCella, Eleonora; Ali, Sobur; Schmedes, Sarah E.; Magalis, Brittany Rife; Marini, Simone; Salemi, Marco; Blanton, Jason; Azarian, Taj
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Severe Acute Respiratory Syndrome Coronavirus 2 Delta Vaccine Breakthrough Transmissibility in Alachua County, Florida
errCLINICAL INFECTIOUS DISEASES
IF7.3
err2022-03-10
err5
errOAAI
errMagalis, Brittany Rife; Rich, Shannan; Tagliamonte, Massimiliano S.; Mavian, Carla; Cash, Melanie N.; Riva, Alberto; Marini, Simone; Amador, David Moraga; Zhang, Yanping; Shapiro, Jerne; Horine, Amelia; Starostik, Petr; Pieretti, Maura; Vega, Samantha; Lacombe, Ana Paula; Salinas, Jessica; Stevenson, Mario; Myers, Paul; Morris, J. Glenn; Lauzardo, Michael; Prosperi, Mattia; Salemi, Marco
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Predator-Prey Dynamics of Intra-Host Simian Immunodeficiency Virus Evolution Within the Untreated Host
errFRONTIERS IN IMMUNOLOGY
IF5.9
err2021-10-06
err2
errOAAI
errRife Magalis, Brittany; Autissier, Patrick; Williams, Kenneth C.; Chen, Xinguang; Browne, Cameron; Salemi, Marco
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errSave
Rapid Emergence and Spread of Severe Acute Respiratory Syndrome Coronavirus 2 Gamma (P.1) Variant in Haiti
errCLINICAL INFECTIOUS DISEASES
IF7.3
err2021-08-30
err12
errOAAI
errTagliamonte, Massimiliano S.; Mavian, Carla; Zainabadi, Kayvan; Cash, Melanie N.; Lednicky, John A.; Magalis, Brittany Rife; Riva, Alberto; Deschamps, Marie Marcelle; Liautaud, Bernard; Rouzier, Vanessa; Fitzgerald, Daniel W.; Pape, Jean William; Morris, J. Glenn; Salemi, Marco
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errSave
SARS-CoV-2 shifting transmission dynamics and hidden reservoirs potentially limit efficacy of public health interventions in Italy
errCOMMUNICATIONS BIOLOGY
IF5.1
err2021-04-21
err24
errOAAI
errGiovanetti, Marta; Cella, Eleonora; Benedetti, Francesca; Rife Magalis, Brittany; Fonseca, Vagner; Fabris, Silvia; Campisi, Giovanni; Ciccozzi, Alessandra; Angeletti, Silvia; Borsetti, Alessandra; Tambone, Vittoradolfo; Sagnelli, Caterina; Pascarella, Stefano; Riva, Alberto; Ceccarelli, Giancarlo; Marcello, Alessandro; Azarian, Taj; Wilkinson, Eduan; de Oliveira, Tulio; Alcantara, Luiz Carlos Junior; Cauda, Roberto; Caruso, Arnaldo; Dean, Natalie E.; Browne, Cameron; Lourenco, Jose; Salemi, Marco; Zella, Davide; Ciccozzi, Massimo
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Molecular Evolution of Human Norovirus GII.2 Clusters
errFRONTIERS IN MICROBIOLOGY
IF4.5
err2021-03-22
err11
errOAAI
errLi, Xingguang; Liu, Haizhou; Rife Magalis, Brittany; Pond, Sergei L. Kosakovsky; Volz, Erik M.
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errSave
Contrast-FEL-A Test for Differences in Selective Pressures at Individual Sites among Clades and Sets of Branches
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2020-10-16
err35
errOAAI
errPond, Sergei L. Kosakovsky; Wisotsky, Sadie R.; Escalante, Ananias; Magalis, Brittany Rife; Weaver, Steven
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errSave
Employing Molecular Phylodynamic Methods to Identify and Forecast HIV Transmission Clusters in Public Health Settings: A Qualitative Study
errVIRUSES-BASEL
IF3.5
err2020-08-22
err11
errOAAI
errRich, Shannan N.; Richards, Veronica L.; Mavian, Carla N.; Switzer, William M.; Rife Magalis, Brittany; Poschman, Karalee; Geary, Shana; Broadway, Steven E.; Bennett, Spencer B.; Blanton, Jason; Leitner, Thomas; Boatwright, J. Lucas; Stetten, Nichole E.; Cook, Robert L.; Spencer, Emma C.; Salemi, Marco; Prosperi, Mattia
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Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2020-05-07
err47
errOAAI
errMavian, Carla; Pond, Sergei Kosakovsky; Marini, Simone; Magalis, Brittany Rife; Vandamme, Anne-Mieke; Dellicour, Simon; Scarpino, Samuel V.; Houldcroft, Charlotte; Villabona-Arenas, Julian; Paisie, Taylor K.; Trovao, Nidia S.; Boucher, Christina; Zhang, Yun; Scheuermann, Richard H.; Gascuel, Olivier; Lam, Tommy Tsan-Yuk; Suchard, Marc A.; Abecasis, Ana; Wilkinson, Eduan; de Oliveira, Tulio; Bento, Ana I.; Schmidt, Heiko A.; Martin, Darren; Hadfield, James; Faria, Nuno; Grubaugh, Nathan D.; Neher, Richard A.; Baele, Guy; Lemey, Philippe; Stadler, Tanja; Albert, Jan; Crandall, Keith A.; Leitner, Thomas; Stamatakis, Alexandros; Prosperi, Mattia; Salemi, Marco
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HyPhy 2.5-A Customizable Platform for Evolutionary Hypothesis Testing Using Phylogenies
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2019-08-27
err338
errOAAI
errPond, Sergei L. Kosakovsky; Poon, Art F. Y.; Velazquez, Ryan; Weaver, Steven; Hepler, N. Lance; Murrell, Ben; Shank, Stephen D.; Magalis, Brittany Rife; Bouvier, Dave; Nekrutenko, Anton; Wisotsky, Sadie; Spielman, Stephanie J.; Frost, Simon D. W.; Muse, Spencer, V
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National and International Dimensions of Human Immunodeficiency Virus-1 Sequence Clusters in a Northern California Clinical Cohort
errOPEN FORUM INFECTIOUS DISEASES
IF3.8
err2019-03-14
err6
errOAAI
errRhee, Soo-Yon; Magalis, Brittany R.; Hurley, Leo; Silverberg, Michael J.; Marcus, Julia L.; Slome, Sally; Pond, Sergei L. Kosakovsky; Shafer, Robert W.
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errSave
Evaluation of global HIV/SIV envelope gp120 RNA structure and evolution within and among infected hosts
errVIRUS EVOLUTION
IF4
err2018-06-21
err2
errOAAI
errMagalis, Brittany Rife; Pond, Sergei L. Kosakovsky; Summers, Michael F.; Salemi, Marco
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errSave
Neutral Theory and Rapidly Evolving Viral Pathogens
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2018-04-24
err48
errOAAI
errFrost, Simon D. W.; Magalis, Brittany Rife; Pond, Sergei L. Kosakovsky
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errSave
Insights into the Impact of CD8+ Immune Modulation on Human Immunodeficiency Virus Evolutionary Dynamics in Distinct Anatomical Compartments by Using Simian Immunodeficiency Virus-Infected Macaque Models of AIDS Progression
errJOURNAL OF VIROLOGY
IF3.8
err2017-12-01
err7
errOAAI
errMagalis, Brittany Rife; Nolan, David J.; Autissier, Patrick; Burdo, Tricia H.; Williams, Kenneth C.; Salemi, Marco
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Research Directions

No research directions
Co-authors
Cooperation Journals
M
Marc A. Suchard
H-index: 104 · Papers: 684
P
Philippe Lemey
H-index: 95 · Papers: 618
K
Keith A. Crandall
H-index: 94 · Papers: 689
R
Robert W. Shafer
H-index: 85 · Papers: 373
T
Túlio de Oliveira
H-index: 84 · Papers: 536
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