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Túlio de Oliveira

stellenbosch university

84H-index
536Paper Count
3.4WCitation Count
Published Papers 172
Publication Date
Ancient pathogen genomics in Africa: Current evidence and future directions
err2026-07-14
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errMaja Vukovikj; Carla Mavian; Helen Wang; Robert J. Gifford; Tulio de Oliveira; Carina Schlebusch
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Evaluation of DNA extraction methods from clinical Mycobacterium tuberculosis primary liquid culture for whole-genome sequencing
err2026-05-19
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errEmilyn Costa Conceição; Mishka Haffejee; Felicia Wells; Brendon Mann; Tim Heupink; Astrid Paulse; Jennifer Williams; Anzaan Dippenaar; Yonas Ghebrekristos; Megan Burger; Vincent Rennie; Miguel de Diego Fuertes; Ilham Al-Talib; Nabila Ismail; Melanie Grobbelaar; Elizabeth Maria Streicher; Túlio de Oliveira; Gian Van der Spuy; Annelies Van Rie; Robin Warren
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Dynamics and ecology of a multistage expansion of Oropouche virus in Brazil
err2026-04-01
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errTegally, Houriiyah; Dellicour, Simon; Poongavanan, Jenicca; Mavian, Carla; Dor, Graeme; Fonseca, Vagner; Tagliamonte, Massimiliano S.; Dunaiski, Marcel; Moir, Monika; Wilkinson, Eduan; Campelo de Albuquerque, Carlos Frederico; Frutuoso, Livia C. V.; Holmes, Edward C.; Baxter, Cheryl; Lessells, Richard; Kraemer, Moritz U. G.; Lourenco, Jose; Alcantara, Luiz Carlos Junior; de Oliveira, Tulio; Giovanetti, Marta
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Identification and genomic characterisation of BA.3.2: a highly divergent BA.3-related SARS-CoV-2 lineage from southern Africa
err2026-03-18
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errGraeme Dor; Dikeledi Kekana; Ryan Hisner; Darren P Martin; Bette Korber; Timo Ernst; Avram Levy; David Speers; Stuart Turville; Vitali Sintchenko; Kerri Basile; Geraldine Sullivan; Rebecca Rockett; Jen Kok; Josette Schoenmakers; Federico Gueli; Richard Lessels; Cheryl Baxter; Nicole Wolter; Anne Gottberg; Houriiyah Tegally; Tulio de Oliveira
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Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny
err2026-02-09
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errMartin Hunt; Angie S. Hinrichs; Daniel Anderson; Lily Karim; Bethany L. Dearlove; Jeff Knaggs; Bede Constantinides; Philip W. Fowler; Gillian Rodger; Teresa Street; Sheila Lumley; Hermione Webster; Theo Sanderson; Christopher Ruis; Benjamin Kotzen; Nicola de Maio; Lucas N. Amenga-Etego; Dominic S. Y. Amuzu; Martin Avaro; Gordon A. Awandare; Reuben Ayivor-Djanie; Timothy Barkham; Matthew Bashton; Elizabeth M. Batty; Yaw Bediako; Denise De Belder; Estefania Benedetti; Andreas Bergthaler; Stefan A. Boers; Josefina Campos; Rosina Afua Ampomah Carr; Yuan Yi Constance Chen; Facundo Cuba; Maria Elena Dattero; Wanwisa Dejnirattisai; Alexander Dilthey; Kwabena Obeng Duedu; Lukas Endler; Ilka Engelmann; Ngiambudulu M. Francisco; Jonas Fuchs; Etienne Z. Gnimpieba; Soraya Groc; Jones Gyamfi; Dennis Heemskerk; Torsten Houwaart; Nei-yuan Hsiao; Matthew Huska; Martin Hölzer; Arash Iranzadeh; Hanna Jarva; Chandima Jeewandara; Bani Jolly; Rageema Joseph; Ravi Kant; Karrie Ko Kwan Ki; Satu Kurkela; Maija Lappalainen; Marie Lataretu; Jacob Lemieux; Chang Liu; Gathsaurie Neelika Malavige; Tapfumanei Mashe; Juthathip Mongkolsapaya; Brigitte Montes; Jose Arturo Molina Mora; Collins M. Morang’a; Bernard Mvula; Niranjan Nagarajan; Andrew Nelson; Joyce M. Ngoi; Joana Paula da Paixão; Marcus Panning; Tomas Poklepovich; Peter K. Quashie; Diyanath Ranasinghe; Mara Russo; James Emmanuel San; Nicholas D. Sanderson; Vinod Scaria; Gavin Screaton; October Michael Sessions; Tarja Sironen; Abay Sisay; Darren Smith; Teemu Smura; Piyada Supasa; Chayaporn Suphavilai; Jeremy Swann; Houriiyah Tegally; Bryan Tegomoh; Olli Vapalahti; Andreas Walker; Robert J. Wilkinson; Carolyn Williamson; Xavier Zair; Tulio de Oliveira; Timothy EA Peto; Derrick Crook; Russell Corbett-Detig; Zamin Iqbal
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CholeraSeq: a comprehensive genomic pipeline for cholera surveillance and near real-time outbreak investigation
err2026-01-01
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PREAI
errTagliamonte, Massimiliano S.; Sharma, Abhinav; Riva, Alberto; Moir, Monika; Salemi, Marco; Baxter, Cheryl; de Oliveira, Tulio; Mavian, Carla N.; Wilkinson, Eduan
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Genomic analysis and antimicrobial resistance of Vibrio cholerae isolated during Zambia's 2023 cholera epidemic
err2025-12-01
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PREAI
errNg'ombe, Harriet; Luchen, Charlie C.; Bote, Lia; Kasonde, Mpanga; Musonda, Kunda; Mwape, Kapambwe K.; Kuntawala, H.; Silwamba, Suwilanji; Chibuye, Mwelwa; Chibesa, Kennedy; Mbewe, Nyuma; Bosomprah, Samuel; Khan, Wesaal; Liebenberg, Lenine; de Oliveira, Tulio; Wilkinson, Eduan; Dorman, Matthew J.; Coghlan, Avril; Simuyandi, Michelo; Chilengi, Roma; Chisenga, Caroline; Thomson, Nicholas R.
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Research Priorities for Zoonotic and Pandemic Influenza Vaccines: Evidence and Recommendations from the WHO Public Health Research Agenda for Influenza (2024 Update)
err2025-11-29
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errWenqing Zhang; Benjamin J. Cowling; John S. L. Tam; Thomas Abraham; Hualan Chen; Keenan Duggal; Wei Xin Khong; Sebastian Maurer-Stroh; Arnold S. Monto; Sergejs Nikisins; Tulio de Oliveira; Yuelong Shu; Cecile Viboud; Richard Webby; Sylvie van der Werf; Jessica Wong; Jean-Michel Heraud
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Robust mission-driven responses to infectious disease threats delivered by the Abbott Pandemic Defense Coalition
err2025-10-31
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errMary A Rodgers; Francisco Averhoff; Michael G Berg; Mark Anderson; Carolyn Strobel; Julissa Inostroza; James Moy; Jorge Mera; Paul J Utz; Scott Weaver; Charles Y Chiu; Judith Carolina De Arcos; Josh Anzinger; Jean Hugues Henrys; Juan Pablo Hernandez; Katherine Torres; Maria Cassia Mendes Correa; Natalia Juliana Nardelli Gonçalves; Esper Kallas; Souleymane Mboup; Alhaji U N’jai; Jean Claude Mbanya; Tulio de Oliveira; Pontiano Kaleebu; Manal El-Sayed; Maia Alkhazashvili; Erum Khan; Rifa Tazyeem Khan; Yupin Suputtamongkol; Jorge Osorio; Gavin A Cloherty
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Consolidation of a genomic epidemiological surveillance network for tuberculosis (REVIGET) in northern and northeastern Brazil: a study protocol
err2025-10-15
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errEmilyn Costa Conceição†; Karla Valéria Batista Lima†; Cristiane Cunha Frota; Theolis Costa Barbosa Bessa; Adriana Ayden Ferreira; Abhinav Sharma; Davi Josué Marcon; Layana Rufino Ribeiro; Alex Brito Souza; Danna Karen Corrêa dos Santos; Carlos Augusto Abreu Alberio; Ricardo José de Paula Souza e Guimarães; Ismari Perini Furlaneto; Lilian Eduarda de Oliveira Freitas; Emmily Oliveira Amador; Hendor Neves Ribeiro de Jesus; Leonardo Bruno Paz Ferreira Barreto; Maria Cristina Silva Lourenço; Tulio de Oliveira‡; Robin Mark Warren‡ REVIGET Consortium
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Enhancing SARS-CoV-2 Response Capacity in Africa and Other CREID Centers through a Collaborative Training Program
err2025-10-11
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PREAI
errAmbroise Ahouidi; Abdou Padane; Alioune Gaye; Anavaj Sakuntabha; Awa Deme; Badara Cisse; Carla de Oliveira; Caroline Weldon; Cyrille Diedhiou; Daouda Ndiaye; Geoffrey S. Gottlieb; Helene McOwen; Ibrahima Dia; Joilson Xavier; Katherine J. Siddle; Kristian Andersen; Lynn Barrett; Mariétou Faye Paye; Mawlouth Diallo; Sasha Tilles; Scott C. Weaver; Shirlee Wohl; Tulio de Oliveira; Luiz Carlos Junior Alcantara; Wesley C. Van Voorhis; Souleymane Mboup; Eduan Wilkinson; Marta Giovanetti
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Detection of dengue, malaria, and additional causes of acute febrile illness: The need for expanded testing, Bayelsa State, Nigeria
err2025-10-10
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PREAI
errAkanbi, Dayo Olufemi; Abaye, Bio Belu; Averhoff, Francisco; Berg, Michael G.; Orf, Gregory S.; Lawan, Kabiru M.; Beckett, Geoff A.; Omotoso, Ayotunde Bolatito; Mata, Maximillian; Cloherty, Gavin A.; Chabuka, Lucious; de Oliveira, Tulio; Mac-Fisi, Kenneth W.; Walter, Azibadighi; Mark, Inara Isaac; Edeki, George; Sinayoko, Abdoulaye; Nasrullah, Muazzam; Justina, Binafeigha Ihekerenma; Balogun, Muhammad Shakir
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A decade of dengue disease burden in Africa (2013–2023): a systematic review
err2025-08-25
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errGaspary O. Mwanyika; Monika Moir; Abdualmoniem O. Musa; Jenicca Poongavanan; Graeme Dor; Eduan Wilkinson; Cheryl Baxter; Tulio de Oliveira; Houriiyah Tegally
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A systematic nomenclature for mpox viruses causing outbreaks with sustained human-to-human transmission
err2025-07-29
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PREAI
errChristopher Ruis; Eddy Lusamaki; Aine O’Toole; James R. Otieno; Rachel Colquhoun; Cornelius Roemer; Tony Wawina-Bokalanga; Olivier Tshiani-Mbaya; Daan Jansen; Jean-Claude Makangara; Anurag Agrawal; Laith Jamal Abu-Raddad; Steve Ahuka-Mundeke; Ahidjo Ayouba; Esam I. Azhar; Leon Caly; Christian Drosten; Nuno R. Faria; Adeola Fowotade; Ana Hoxha; Baoying Huang; Bette Korber; Olivier le Polain de Waroux; Rosamund F. Lewis; Laurens Liesenborghs; Nada M. Melhem; Vincent J. Munster; Dimie Ogoina; Bas B. Oude Munnink; Joseph Sriyal Malik Peiris; Gustavo Palacios; Martine Peeters; Paola Resende; Anne W. Rimoin; Senjuti Saha; Yee-Sin Leo; Tadaki Suzuki; Koen Vercauteren; Pragya Yadav; Maria D. Van Kerkhove; Richard Neher; Tulio de Oliveira; David Ulaeto; Placide Mbala-Kingebeni; Jason Kindrachuk; Marion P. G. Koopmans; Meera Chand; Anne von Gottberg; Lorenzo Subissi; Andrew Rambaut
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Characterization of SARS-CoV-2 intrahost genetic evolution in vaccinated and non-vaccinated patients from the Kenyan population
err2025-06-17
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errLugano, Doreen; Mwangi, Kennedy; Mware, Bernard; Kibet, Gilbert; Osiany, Shebbar; Kiritu, Edward; Dobi, Paul; Muli, Collins; Njeru, Regina; de Oliveira, Tulio; Njenga, M. Kariuki; Routh, Andrew; Oyola, Samuel O.
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Alignment-free viral sequence classification at scale
err2025-04-18
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errvan Zyl, Daniel J.; Dunaiski, Marcel; Tegally, Houriiyah; Baxter, Cheryl; de Oliveira, Tulio; Xavier, Joicymara S.
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Unveiling novel features and phylogenomic assessment of indigenous Priestia megaterium AB-S79 using comparative genomics
err2025-02-19
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errAdeniji, Adetomiwa Ayodele; Chukwuneme, Chinenyenwa Fortune; Conceicao, Emilyn Costa; Ayangbenro, Ayansina Segun; Wilkinson, Eduan; Maasdorp, Elizna; de Oliveira, Tulio; Babalola, Olubukola Oluranti
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Emergence of the BA.2.87.1 lineage of SARS-CoV-2 in South Africa, a highly diverged BA.2-related lineage
err2025-01-01
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PREAI
errKekana, Dikeledi; Ntozini, Buhle; Hisner, Ryan; Yousif, Mukhlid; Ntuli, Phindile; Ndlovu, Nkosenhle; McCarthy, Kerrigan; Mnguni, Anele; Mahlangu, Boitshoko; Nzimande, Ayanda; Stock, Nadine; Tegally, Houriiyah; Davis, Mary-Ann; Moir, Monika; Wilkinson, Eduan; Baxter, Cheryl; Bhiman, Jinal; Cohen, Cheryl; Walaza, Sibongile; Von Gottberg, Anne; De Oliveira, Tulio; Wolter, Nicole; Martin, Darren
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Emergence of Omicron FN.1 a descendent of BQ.1.1 in Botswana
err2024-11-22
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errChoga, Wonderful T.; Gustani-Buss, Emanuele; Tegally, Houriiyah; Maruapula, Dorcas; Yu, Xiaoyu; Moir, Monika; Zuze, Boitumelo J. L.; James, San Emmanuel; Ndlovu, Nokuthula S.; Seru, Kedumetse; Motshosi, Patience; Blenkinsop, Alexandra; Gobe, Irene; Baxter, Cheryl; Manasa, Justen; Lockman, Shahin; Shapiro, Roger; Makhema, Joseph; Wilkinson, Eduan; Blackard, Jason T.; Lemey, Phillipe; Lessells, Richard J.; Martin, Darren P.; de Oliveira, Tulio; Gaseitsiwe, Simani; Moyo, Sikhulile
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A phylogenetic assessment of HIV-1 transmission trends among people who inject drugs from Coastal and Nairobi, Kenya
err2024-11-11
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errKingston, Hanley; Nduva, George; Chohan, Bhavna H.; Mbogo, Loice; Monroe-Wise, Aliza; Sambai, Betsy; Guthrie, Brandon L.; Wilkinson, Eduan; Giandhari, Jennifer; Masyuko, Sarah; Sinkele, William; de Oliveria, Tulio; Bukusi, David; Scott, John; Farquhar, Carey; Herbeck, Joshua T.
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