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Philippe Lemey

ku leuven

95H-index
618Paper Count
4.4WCitation Count
Published Papers 234
Publication Date
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Genomic Diversity of Human Respiratory Syncytial Virus (HRSV) Type A in a Pediatric Cohort in the United States After the Onset of the COVID-19 Pandemic
errMicroorganisms
IF4.2
err2026-07-30
err0
errOAAI
errLuciane Amorim Santos; Anastasia Castillo; Emanuele Gustani-Buss; Matt D. T. Hitchings; Peiyu Liu; Nicole Iovine; Melanie N. Cash; Jose L. Estrada; Laise de Moraes; Philippe Lemey; John Lednicky; John Glenn Morris, Jr.; Kathleen Ryan; Marco Salemi
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errSave
SARS-CoV-2 Delta variant re-emerges in US farmed mink and free-ranging white-tailed deer in 2022–2023
errNature Communications
IF15.7
err2026-07-09
err0
errOAAI
errAlvin Crespo-Bellido; Madison C. Owsiany; Natalie N. Chillson; Devra Huey; Dillon S. McBride; Phillippe Lemey; Steven I. Rekant; John Korslund; Michael Neafsey; Mary Lea Killian; Jeffrey C. Chandler; Challis Hobbs; Hugh H. Hildebrandt; John Easley; Jacob S. Yount; Martha I. Nelson; Andrew S. Bowman
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errSave
nf-core/viralmetagenome: A Novel Pipeline for Untargeted Viral Genome Reconstruction
errBioinformatics
IF5.4
err2026-04-29
err0
errOAAI
errJoon Klaps; Philippe Lemey; Magda Bletsa; nf-core community; Liana Eleni Kafetzopoulou; null
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errSave
Nosocomial outbreak of Lassa fever in Conakry, Guinea, 2022
errThe Journal of Infectious Diseases
IF0
err2026-04-23
err0
errOAAI
errGiuditta Annibaldis; Barré Soropogui; Kékoura Ifono; Jacob Camara; Mohamed Lamine Kaba; Fanta Berete; Sarah Ryter; Moussa Conde; Saa Lucien Millimono; Mette Hinrichs; Hugo Soubrier; Eugène Kolie; Nourdine Ibrahim; Bakary Sylla; Liana Eleni Kafetzopoulou; Joon Klaps; Philippe Lemey; Nils Peter Petersen; Mia Le; Emily Victoria Nelson; Kouramoudou Berete; Fodé Amara Traore; Anaïs Legand; Pierre Formenty; Fara Raymond Koundouno; Alimou Camara; Stephan Günther; Sophie Duraffour; Sanaba Boumbaly; null
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errSave
Dengue serotypes and epidemic dynamics in Brazil: a spatiotemporal perspective
errTRAVEL MEDICINE AND INFECTIOUS DISEASE
IF4.7
err2026-01-01
err0
errOAAI
errLorenz, Camila; Lemey, Philippe; Dellicour, Simon
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errSave
ViMOP: a user-friendly and field-applicable pipeline for untargeted viral genome nanopore sequencing
errBioinformatics
IF5.4
err2025-12-29
err0
errOAAI
errNils Peter Petersen; Mia Le; Annick Renevey; Ehizojie Emua; Sarah Ryter; Giuditta Annibaldis; Jacob Camara; Sanaba Boumbaly; Cyril Erameh; Tanja Laske; Jan Baumbach; Philippe Lemey; Stephan Günther; Sophie Duraffour; Liana Eleni Kafetzopoulou
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errSave
Molecular epidemiology of HIV-1 in Hungary: an evolving contact zone of colliding virus subtypes
errFrontiers in Microbiology
IF4.5
err2025-12-16
err0
errOAAI
errLevente Zsichla; Lilla Adravecz; Dalma Müller; Philippe Lemey; Áron Lakatos; Eszter Ari; Katharina Kusejko; Roger Kouyos; János Szlávik; Botond Lakatos; Éva Áy; Viktor Müller
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errSave
HIPSTR: highest independent posterior subtree reconstruction in TreeAnnotator X
errBIOINFORMATICS
IF5.4
err2025-10-01
err2
errOAAI
errBaele, Guy; Carvalho, Luiz M.; Brusselmans, Marius; Dudas, Gytis; Ji, Xiang; McCrone, John T.; Lemey, Philippe; Suchard, Marc A.; Rambaut, Andrew
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errSave
Genomic epidemiology of clade Ia monkeypox viruses circulating in the Central African Republic in 2022–24: a retrospective cross-sectional study
errlancet microbe
IF0
err2025-09-04
err0
errOAAI
errChristian Noël Malaka; Livia Victoria Patrono; Thais Berenger Tombolomako; Ella Farra; Ornella Sibiro; Sandra Garba-Ouangolé; Benjamin Selekon; Cyprien Gildas Lemon; Festus Mbrenga; Aboubacar Soumah; Jenny Lorke; Ariane Düx; Julien Honorat Semdouto; Frédéric Stéphane Singa Niatou; Jephté Kaleb Kandou; Mbaïlao Raphaël; Jean Méthode Moyen; Ernest Kalthan; Edith Sako; Aubin Ngbeadego-Soukoudoupou; Odilon Auguste Kpahina; Philippe Lemey; Áine O’Toole; Andrew Rambaut; Pierre Somse; Sébastien Calvignac-Spencer; Emmanuel Nakoune; Fabian Hubertus Leendertz; Yap Boum
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errSave
Extensive cross-species transmission of pathogens and antibiotic resistance genes in mammals neglected by public health surveillance
errCell
IF42.5
err2025-08-26
err0
PREAI
errYuqi Shi; Yuxing Li; Haipeng Li; Ayidana Haerheng; Vanessa R. Marcelino; Meng Lu; Philippe Lemey; Jia Tang; Yuhai Bi; John H.-O. Pettersson; Jon Bohlin; Joon Klaps; Zuowei Wu; Wenbo Wan; Bowen Sun; Mei Kang; Edward C. Holmes; Na He; Shuo Su
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errSave
Infinite Mixture Models for Improved Modeling of Across-Site Evolutionary Variation
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2025-08-01
err0
errOAAI
errGill, Mandev S.; Baele, Guy; Suchard, Marc A.; Lemey, Philippe
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errSave
BEAST X for Bayesian phylogenetic, phylogeographic and phylodynamic inference
errNature Methods
IF32.1
err2025-07-07
err0
errOAAI
errGuy Baele; Xiang Ji; Gabriel W. Hassler; John T. McCrone; Yucai Shao; Zhenyu Zhang; Andrew J. Holbrook; Philippe Lemey; Alexei J. Drummond; Andrew Rambaut; Marc A. Suchard
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errSave
Transmission dynamics of the 2022 mpox epidemic in New York City
errNATURE MEDICINE
IF50
err2025-03-25
err0
errOAAI
errPekar, Jonathan E.; Wang, Yu; Wang, Jade C.; Shao, Yucai; Taki, Faten; Forgione, Lisa A.; Amin, Helly; Clabby, Tyler; Johnson, Kimberly; Torian, Lucia V.; Braunstein, Sarah L.; Pathela, Preeti; Omoregie, Enoma; Hughes, Scott; Suchard, Marc A.; Vasylyeva, Tetyana I.; Lemey, Philippe
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errSave
Recently reported SARS-CoV-2 genomes suggested to be intermediate between the two early main lineages are instead likely derived
errVIRUS EVOLUTION
IF4
err2025-02-22
err0
errOAAI
errPekar, Jonathan E.; Moshiri, Niema; Lemey, Philippe; Crits-Christoph, Alexander; Debarre, Florence; Goldstein, Stephen A.; Hensel, Zach; Rambaut, Andrew; Worobey, Michael; Holmes, Edward C.; Wertheim, Joel O.
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Tracing more than two decades of Japanese encephalitis virus circulation in mainland China
errJOURNAL OF VIROLOGY
IF3.8
err2025-02-13
err0
errOAAI
errLi, Gairu; Li, Xinxin; Chen, Jie; Lemey, Phillipe; Vrancken, Bram; Su, Shuo; Dellicour, Simon; Gambaro, Fabiana
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errSave
Dispersal dynamics and introduction patterns of SARS-CoV-2 lineages in Iran
errVIRUS EVOLUTION
IF4
err2025-01-27
err0
errOAAI
errGustani-Buss, Emanuele C.; Salehi-Vaziri, Mostafa; Lemey, Philippe; Thijssen, Marijn; Fereydouni, Zahra; Ahmadi, Zahra; Ranst, Marc Van; Maes, Piet; Pourkarim, Mahmoud Reza; Maleki, Ali
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Integrating dynamical modeling and phylogeographic inference to characterize global influenza circulation
errPNAS NEXUS
IF3.8
err2024-12-17
err0
errOAAI
errParino, Francesco; Gustani-Buss, Emanuele; Bedford, Trevor; Suchard, Marc A.; Trovao, Nidia S.; Rambaut, Andrew; Colizza, Vittoria; Poletto, Chiara; Lemey, Philippe
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Evolutionary genomics of Leishmania braziliensis across the neotropical realm
errCOMMUNICATIONS BIOLOGY
IF5.1
err2024-11-28
err0
errOAAI
errHeeren, Senne; Sanders, Mandy; Shaw, Jeffrey Jon; Pinto Brandao-Filho, Sinval; Cortes Boite, Mariana; Motta Cantanhede, Lilian; Chourabi, Khaled; Maes, Ilse; Llanos-Cuentas, Alejandro; Arevalo, Jorge; Marco, Jorge D.; Lemey, Philippe; Cotton, James A.; Dujardin, Jean-Claude; Cupolillo, Elisa; van den Broeck, Frederik
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errSave
Emergence of Omicron FN.1 a descendent of BQ.1.1 in Botswana
errVIRUS EVOLUTION
IF4
err2024-11-22
err0
errOAAI
errChoga, Wonderful T.; Gustani-Buss, Emanuele; Tegally, Houriiyah; Maruapula, Dorcas; Yu, Xiaoyu; Moir, Monika; Zuze, Boitumelo J. L.; James, San Emmanuel; Ndlovu, Nokuthula S.; Seru, Kedumetse; Motshosi, Patience; Blenkinsop, Alexandra; Gobe, Irene; Baxter, Cheryl; Manasa, Justen; Lockman, Shahin; Shapiro, Roger; Makhema, Joseph; Wilkinson, Eduan; Blackard, Jason T.; Lemey, Phillipe; Lessells, Richard J.; Martin, Darren P.; de Oliveira, Tulio; Gaseitsiwe, Simani; Moyo, Sikhulile
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Modeling the velocity of evolving lineages and predicting dispersal patterns
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2024-11-15
err0
errOAAI
errBastide, Paul; Rocu, Pauline; Wirtz, Johannes; Hassler, Gabriel W.; Chevenet, Francois; Fargette, Denis; Suchard, Marc A.; Dellicour, Simon; Lemey, Philippe; Guindon, Stephane
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Research Directions

No research directions
Co-authors
Cooperation Journals
J
Julian Parkhill
H-index: 177 · Papers: 1.1K
E
Edward C. Holmes
H-index: 165 · Papers: 1.2K
S
Séverine Vermeire
H-index: 163 · Papers: 2.4K
S
Steven G. Deeks
H-index: 151 · Papers: 971
A
Andrew Rambaut
H-index: 150 · Papers: 521
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