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Pralay Mitra

department of computer science and engineering

15H-index
66Paper Count
597Citation Count
Published Papers 24
Publication Date
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DeepPROTECTNeo: a context-aware personalised and reverse vaccinology-guided deep learning framework for immunogenicity prediction
errBMC Biology
IF4.5
err2026-09-08
err0
errOAAI
errDebraj Das; Soumyadeep Bhaduri; Pralay Mitra
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A transformer-based method for the cap analysis of gene expression and gene expression tag associated capping region prediction in RNA
errRNA Biology
IF3.4
err2026-05-23
err0
errOAAI
errHaldar, Dibya Kanti; Pramanick, Avik; Mukherjee, Chandrama; Mitra, Pralay
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Targeting of HSP27 and MMP-2/9 Crosstalk by High-Throughput Drug Repurposing Strategies Identifies Paroxetine as a Potential Candidate in Glioblastoma
errJournal of Medicinal Chemistry
IF6.8
err2026-02-16
err0
PREAI
errSuvendu Nandi; Shreya Banerjee; Debolina Manna; Animesh Awasthi; Angana Biswas; Abhijit Das; Budhaditya Mukherjee; Pralay Mitra; Mahitosh Mandal
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E(Q)AGNN-PPIS: Attention Enhanced Equivariant Graph Neural Network for Protein-Protein Interaction Site Prediction
errIEEE Transactions on Signal and Information Processing over Networks
IF4.9
err2025-01-01
err0
errOAAI
errAnimesh; Rishi Suvvada; Plaban Kumar Bhowmick; Pralay Mitra
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The molecular prognostic score, a classifier for risk stratification of high-grade serous ovarian cancer
errJOURNAL OF OVARIAN RESEARCH
IF4.2
err2024-08-02
err2
errOAAI
errSarkar, Siddik; Saha, Sarbar Ali; Swarnakar, Abhishek; Chakrabarty, Arnab; Dey, Avipsa; Sarkar, Poulomi; Banerjee, Sarthak; Mitra, Pralay
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MaTPIP: A deep-learning architecture with eXplainable AI for sequence-driven, feature mixed protein-protein interaction prediction
errCOMPUTER METHODS AND PROGRAMS IN BIOMEDICINE
IF4.8
err2024-02-01
err5
PREAI
errGhosh, Shubhrangshu; Mitra, Pralay
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Genome surveillance of SARS-CoV-2 variants and their role in pathogenesis focusing on second wave of COVID-19 in India
errSCIENTIFIC REPORTS
IF3.9
err2023-03-22
err8
errOAAI
errSarkar, Poulomi; Banerjee, Sarthak; Saha, Sarbar Ali; Mitra, Pralay; Sarkar, Siddik
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Therapeutic targeting of RBPJ, an upstream regulator of ETV6 gene, abrogates ETV6-NTRK3 fusion gene transformations in glioblastoma
errCANCER LETTERS
IF10.1
err2022-09-01
err4
PREAI
errBiswas, Angana; Rajesh, Yetirajam; Das, Subhayan; Banerjee, Indranil; Kapoor, Neelkamal; Mitra, Pralay; Mandal, Mahitosh
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errSave
Modularity-based parallel protein design algorithm with an implementation using shared memory programming
errPROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
IF2.8
err2021-10-23
err3
PREAI
errPal, Abantika; Mulumudy, Rohith; Mitra, Pralay
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A computational framework for modeling functional protein-protein interactions
errPROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
IF2.8
err2021-06-09
err2
PREAI
errPal, Abantika; Pal, Debnath; Mitra, Pralay
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errSave
High-Performance Whole-Cell Simulation Exploiting Modular Cell Biology Principles
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2021-03-08
err6
PREAI
errDas, Barnali; Mitra, Pralay
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errSave
An Evolutionary Profile Guided Greedy Parallel Replica-Exchange Monte Carlo Search Algorithm for Rapid Convergence in Protein Design
errIEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS
IF3.4
err2021-03-01
err5
errOAAI
errBanerjee, Anupam; Pal, Kuntal; Mitra, Pralay
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Estimating Change in Foldability Due to Multipoint Deletions in Protein Structures
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2020-11-23
err6
PREAI
errBanerjee, Anupam; Kumar, Amit; Ghosh, Kushal Kanti; Mitra, Pralay
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errSave
Ebola Virus VP35 Protein: Modeling of the Tetrameric Structure and an Analysis of Its Interaction with Human PKR
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2020-09-01
err7
errOAAI
errBanerjee, Anupam; Mitra, Pralay
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errSave
ETV6 gene aberrations in non-haematological malignancies: A review highlighting ETV6 associated fusion genes in solid tumors
errBIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER
IF8.3
err2020-08-01
err13
PREAI
errBiswas, Angana; Rajesh, Yetirajam; Mitra, Pralay; Mandal, Mahitosh
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errSave
Estimating the Effect of Single-Point Mutations on Protein Thermodynamic Stability and Analyzing the Mutation Landscape of the p53 Protein
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2020-05-13
err13
PREAI
errBanerjee, Anupam; Mitra, Pralay
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errSave
Boosting phosphorylation site prediction with sequence feature-based machine learning
errPROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
IF2.8
err2019-08-22
err13
PREAI
errMaiti, Shyantani; Hassan, Atif; Mitra, Pralay
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Analyzing Change in Protein Stability Associated with Single Point Deletions in a Newly Defined Protein Structure Database
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2019-02-08
err9
PREAI
errBanerjee, Anupam; Levy, Yaakov; Mitra, Pralay
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errSave
Integrin β1 regulates doxorubicin resistance in breast cancer via FAK-mediated activation of ERK1 pathway
errCANCER RESEARCH
IF16.6
err2018-07-01
err0
PREAI
errDas, Subhayan; Jena, Bikash Ch; Mundre, Swati; Parekh, Aditya; Rajesh, Y.; Mitra, Pralay; Mandal, Mahitosh
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An Evolution-Based Approach to De Novo Protein Design and Case Study on Mycobacterium tuberculosis
errplos biology
IF3.6
err2013-10-24
err43
errOAAI
errMitra, Pralay; Shultis, David; Brender, Jeffrey R.; Czajka, Jeff; Marsh, David; Gray, Felicia; Cierpicki, Tomasz; Zhang, Yang
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errSave

Research Directions

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Co-authors
Cooperation Journals
张扬 cover
张扬 (Yang Zhang)
H-index: 112 · Papers: 1.6K
M
Mahitosh Mandal
H-index: 71 · Papers: 371
D
David Marsh
H-index: 60 · Papers: 506
Y
Yaakov Levy
H-index: 51 · Papers: 196
J
Jeffrey Brender
H-index: 50 · Papers: 320
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