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Jimmy K. Eng

university of washington

79H-index
180Paper Count
3.8WCitation Count
Published Papers 111
Publication Date
Open-Source and FAIR Research Software for Proteomics
err2025-04-01
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errPerez-Riverol, Yasset; Bittremieux, Wout; Noble, William S.; Martens, Lennart; Bilbao, Aivett; Lazear, Michael R.; Gruening, Bjorn; Katz, Daniel S.; MacCoss, Michael J.; Dai, Chengxin; Eng, Jimmy K.; Bouwmeester, Robbin; Shortreed, Michael R.; Audain, Enrique; Sachsenberg, Timo; Van Goey, Jeroen; Wallmann, Georg; Wen, Bo; Kall, Lukas; Fondrie, William E.
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Trans-Proteomic Pipeline: Robust Mass Spectrometry-Based Proteomics Data Analysis Suite
err2023-01-17
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errDeutsch, Eric W.; Mendoza, Luis; Shteynberg, David D.; Hoopmann, Michael R.; Sun, Zhi; Eng, Jimmy K.; Moritz, Robert L.
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The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data
err2023-01-04
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errKertesz-Farkas, Attila; Acquaye, Frank Lawrence Nii Adoquaye; Bhimani, Kishankumar; Eng, Jimmy K.; Fondrie, William E.; Grant, Charles; Hoopmann, Michael R.; Lin, Andy; Lu, Yang Y.; Moritz, Robert L.; MacCoss, Michael J.; Noble, William Stafford
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Coisolation of Peptide Pairs for Peptide Identification and MS/MS- Based Quantification
err2022-10-28
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errSmith, Ian R.; Eng, Jimmy K.; Barente, Anthony S.; Hogrebe, Alexander; Llovet, Ariadna; Rodriguez-Mias, Ricard A.; Villen, Judit
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Full-Featured, Real-Time Database Searching Platform Enables Fast and Accurate Multiplexed Quantitative Proteomics
err2020-03-03
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errSchweppe, Devin K.; Eng, Jimmy K.; Yu, Qing; Bailey, Derek; Rad, Ramin; Navarrete-Perea, Jose; Huttlin, Edward L.; Erickson, Brian K.; Paulo, Joao A.; Gygi, Steven P.
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In Vivo Cross-Linking MS Reveals Conservation in OmpA Linkage to Different Classes of β-Lactamase Enzymes
err2019-11-21
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errZhong, Xuefei; Wu, Xia; Schweppe, Devin K.; Chavez, Juan D.; Mathay, Martin; Eng, Jimmy K.; Keller, Andrew; Bruce, James E.
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Proteomics Standards Initiative Extended FASTA Format
err2019-05-13
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errBinz, Pierre-Alain; Shofstahl, Jim; Vizcaino, Juan Antonio; Barsnes, Harald; Chalkley, Robert J.; Menschaert, Gerben; Alpi, Emanuele; Clauser, Karl; Eng, Jimmy K.; Lane, Lydie; Seymour, Sean L.; Sanchez, Luis Francisco Hernandez; Mayer, Gerhard; Eisenacher, Martin; Perez-Riverol, Yasset; Kapp, Eugene A.; Mendoza, Luis; Baker, Peter R.; Collins, Andrew; Van den Bossche, Tim; Deutsch, Eric W.
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In Vivo Proteome of Pseudomonas aeruginosa in Airways of Cystic Fibrosis Patients
err2019-05-07
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errWu, Xia; Siehnel, Richard J.; Garudathri, Jayanthi; Staudinger, Benjamin J.; Hisert, Katherine B.; Ozer, Egon A.; Hauser, Alan R.; Eng, Jimmy K.; Manoil, Colin; Singh, Pradeep K.; Bruce, James E.
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A Tandem Mass Spectrometry Sequence Database Search Method for Identification of O-Fucosylated Proteins by Mass Spectrometry
err2018-12-07
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errSwearingen, Kristian E.; Eng, Jimmy K.; Shteynberg, David; Vigdorovich, Vladimir; Springer, Timothy A.; Mendoza, Luis; Sather, D. Noah; Deutsch, Eric W.; Kappe, Stefan H. I.; Moritz, Robert L.
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Tools for 3D Interactome Visualization
err2018-12-06
err26
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errKeller, Andrew; Chavez, Juan D.; Eng, Jimmy K.; Thornton, Zorian; Bruce, James E.
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Mango: A General Tool for Collision Induced Dissociation-Cleavable Cross-Linked Peptide Identification
err2018-04-20
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errMohr, Jared P.; Perumalla, Poorna; Chavez, Juan D.; Eng, Jimmy K.; Bruce, James E.
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Extracellular Matrix Proteins Mediate HIV-1 gp120 Interactions with α4β7
err2017-11-01
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errPlotnik, David; Guo, Wenjin; Cleveland, Brad; von Haller, Priska; Eng, Jimmy K.; Guttman, Miklos; Lee, Kelly K.; Arthos, James; Hu, Shiu-Lok
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Large-Scale and Targeted Quantitative Cross-Linking MS Using Isotope-Labeled Protein Interaction Reporter (PIR) Cross-Linkers
err2016-11-30
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errZhong, Xuefei; Navare, Arti T.; Chavez, Juan D.; Eng, Jimmy K.; Schweppe, Devin K.; Bruce, James E.
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In vivo protein interaction network analysis reveals porin-localized antibiotic inactivation in Acinetobacter baumannii strain AB5075
err2016-11-11
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errWu, Xia; Chavez, Juan D.; Schweppe, Devin K.; Zheng, Chunxiang; Weisbrod, Chad R.; Eng, Jimmy K.; Murali, Ananya; Lee, Samuel A.; Ramage, Elizabeth; Gallagher, Larry A.; Kulasekara, Hemantha D.; Edrozo, Mauna E.; Kamischke, Cassandra N.; Brittnacher, Mitchell J.; Miller, Samuel I.; Singh, Pradeep K.; Manoil, Colin; Bruce, James E.
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In Vivo Conformational Dynamics of Hsp90 and Its Interactors
err2016-06-01
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errChavez, Juan D.; Schweppe, Devin K.; Eng, Jimmy K.; Bruce, James E.
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Spectral Library Searching To Identify Cross-Linked Peptides
err2016-04-28
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errSchweppe, Devin K.; Chavez, Juan D.; Navare, Arti T.; Wu, Xia; Ruiz, Bianca; Eng, Jimmy K.; Lam, Henry; Bruce, James E.
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Visualization of Host-Polerovirus Interaction Topologies Using Protein Interaction Reporter Technology
err2016-02-15
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errDeBlasio, Stacy L.; Chavez, Juan D.; Alexander, Mariko M.; Ramsey, John; Eng, Jimmy K.; Mahoney, Jaclyn; Gray, Stewart M.; Bruce, James E.; Cilia, Michelle
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Quantitative interactome analysis reveals a chemoresistant edgotype
err2015-08-03
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errChavez, Juan D.; Schweppe, Devin K.; Eng, Jimmy K.; Zheng, Chunxiang; Taipale, Alex; Zhang, Yiyi; Takara, Kohji; Bruce, James E.
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