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Matthew F. Allan

Harvard University

11H-index
25Paper Count
892Citation Count
Published Papers 7
Publication Date
Diverse database and machine learning model to narrow the generalization gap in RNA structure prediction
err2026-02-25
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errOAAI
errAlbéric A. de Lajarte; Yves J. Martin des Taillades; Justin Aruda; Pierre Bongrand; Federico Fuchs Wightman; Dragui Salazar; Matthew F. Allan; Colin Kalicki; Casper L’Esperance-Kerckhoff; Alex Kashi; Fabrice Jossinet; Silvi Rouskin
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SEISMICgraph: a web-based tool for RNA structure data visualization
err2025-08-12
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errOAAI
errWightman, Federico Fuchs; Yang, Grant; des Taillades, Yves J. Martin; L'Esperance-Kerckhoff, Casper; Grote, Scott; Allan, Matthew F.; Herschlag, Daniel; Rouskin, Silvi; Hagler, Lauren D.
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RNA levers and switches controlling viral gene expression
err2023-04-01
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errOAAI
errAllan, Matthew F.; Brivanlou, Amir; Rouskin, Silvi
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3D RNA-scaffolded wireframe origami
err2023-01-24
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errOAAI
errParsons, Molly F.; Allan, Matthew F.; Li, Shanshan; Shepherd, Tyson R.; Ratanalert, Sakul; Zhang, Kaiming; Pullen, Krista M.; Chiu, Wah; Rouskin, Silvi; Bathe, Mark
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Secondary structural ensembles of the SARS-CoV-2 RNA genome in infected cells
err2022-03-02
err92
errOAAI
errLan, Tammy C. T.; Allan, Matty F.; Malsick, Lauren E.; Woo, Jia Z.; Zhu, Chi; Zhang, Fengrui; Khandwala, Stuti; Nyeo, Sherry S. Y.; Sun, Yu; Guo, Junjie U.; Bathe, Mark; Naar, Anders; Griffiths, Anthony; Rouskin, Silvi
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Simulation-Guided Design of Cytochrome P450 for Chemo- and Regioselective Macrocyclic Oxidation
err2018-03-09
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PREAI
errPetrovic, Dusan; Bokel, Ansgar; Allan, Matthew; Urlacher, Vlada B.; Strodel, Birgit
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Computational Redesign of Acyl-ACP Thioesterase with Improved Selectivity toward Medium-Chain-Length Fatty Acids
err2017-05-02
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errOAAI
errGrisewood, Matthew J.; Hernandez-Lozada, Nestor J.; Thoden, James B.; Gifford, Nathanael P.; Mendez-Perez, Daniel; Schoenberger, Haley A.; Allan, Matthew F.; Floy, Martha E.; Lai, Rung-Yi; Holden, Hazel M.; Pfleger, Brian F.; Maranas, Costas D.
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