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Tom van der Valk

Swedish Museum of Natural History

23H-index
79Paper Count
2.2KCitation Count
Published Papers 28
Publication Date
Ancient RNA expression profiles from the extinct woolly mammoth
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IF42.5
err2025-11-14
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errEmilio Mármol-Sánchez; Bastian Fromm; Nikolay Oskolkov; Zoé Pochon; Marianne Dehasque; Morteza Aslanzadeh; Elif Bozlak; Katherine Brown; Tom van der Valk; Panagiotis Kalogeropoulos; J. Camilo Chacón-Duque; Inna Biryukova; Peter D. Heintzman; Cecilia Furugård; Valeri Plotnikov; Albert Protopopov; Björn Andersson; Erik Ersmark; Kevin J. Peterson; Marc R. Friedländer
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Genomic and morphological analysis reveals long-term mammoth hybridization in British Columbia, Canada
err2025-09-24
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PREAI
errDehasque, Marianne; van der Valk, Tom; Chacon-Duque, J. Camilo; Termes, Laura; Larsson, Petter; Moots, Hannah M.; Tubbesing, Florentine; Larsdotter, Juliana; Oteo-Garcia, Gonzalo; Moreland, Kelsey; van Essen, Hans; Arbour, Victoria; Keddie, Grant; Richards, Michael P.; Diez-del-Molino, David; Heintzman, Peter D.; Lister, Adrian; Dalen, Love
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Small Bugs, Big Data: Metagenomics for Arthropod Biodiversity Monitoring
err2025-09-16
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errLopez Clinton, Samantha; Iwaszkiewicz-Eggebrecht, Ela; Miraldo, Andreia; Goodsell, Robert; Webster, Matthew T.; Ronquist, Fredrik; van der Valk, Tom
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Ancient host-associated microbes obtained from mammoth remains
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IF42.5
err2025-09-02
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PREAI
errBenjamin Guinet; Nikolay Oskolkov; Kelsey Moreland; Marianne Dehasque; J. Camilo Chacón-Duque; Anders Angerbjörn; Juan Luis Arsuaga; Gleb Danilov; Foteini Kanellidou; Andrew C. Kitchener; Héloïse Muller; Valerii Plotnikov; Albert Protopopov; Alexei Tikhonov; Laura Termes; Grant Zazula; Peter Mortensen; Lena Grigorieva; Michael Richards; Beth Shapiro; Adrian M. Lister; Sergey Vartanyan; David Díez-del-Molino; Anders Götherström; Patrícia Pečnerová; Pavel Nikolskiy; Love Dalén; Tom van der Valk
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Metagenomic insights into the diet and past Kolyma Lowland habitat from the intestinal content of a Late Pleistocene steppe bison
err2025-09-02
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errChenyu Jin; Adrian Forsythe; Miklós Bálint; Frank Kienast; Pavel A. Nikolskiy; Rafał Kowalczyk; Katerina Guschanski; Tom van der Valk
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Reticulate and Hybrid Speciation is Promoted by Environmental Instability in an Indo-Pacific Species Complex of Whistlers (Aves: Pachycephala)
err2025-07-12
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errMartin Irestedt; Ingo A. Müller; Filip Thörn; Leo Joseph; Johan A. A. Nylander; Benjamin Guinet; Tom van der Valk; Knud Andreas Jønsson
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Metagenomic biodiversity assessment within an offshore wind farm
err2025-05-14
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errOAAI
errSerivichyaswat, Phanu Theodore; Scholte, Thijs; Wilms, Tim; Stranddorf, Liv; van der Valk, Tom
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Constraints to gene flow increase the risk of genome erosion in the Ngorongoro Crater lion population
err2025-04-21
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errDussex, Nicolas; Jansson, Ingela; van der Valk, Tom; Packer, Craig; Norman, Anita; Kissui, Bernard M.; E. Mjingo, Ernest; Spong, Goeran
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A Million Years of Mammoth Mitogenome Evolution
err2025-04-09
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errChacon-Duque, J. Camilo; Thorpe, Jessica A. Thomas; Li, Wenxi; Dehasque, Marianne; Pecnerova, Patricia; Barlow, Axel; Diez-del-Molino, David; Henneberger, Kirstin; Jin, Chenyu; Moreland, Kelsey N.; Paijmans, Johanna L. A.; van der Valk, Tom; Westbury, Michael, V; Wijnands, Flore; Barnes, Ian; Germonpre, Mietje; Hall, Elizabeth; Hewitson, Susan; Mol, Dick; Nikolskiy, Pavel; Sablin, Mikhail; Vartanyan, Sergey; Zazula, Grant D.; Gotherstrom, Anders; Lister, Adrian M.; Hofreiter, Michael; Heintzman, Peter D.; Dalen, Love
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Improving taxonomic inference from ancient environmental metagenomes by masking microbial-like regions in reference genomes
err2025-01-01
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errOskolkov, Nikolay; Jin, Chenyu; Clinton, Samantha Lopez; Guinet, Benjamin; Wijnands, Flore; Johnson, Ernst; Kutschera, Verena E.; Kinsella, Cormac M.; Heintzman, Peter D.; van der Valk, Tom
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Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species
err2023-11-10
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errBarcala, Maximiliano Estravis; van der Valk, Tom; Chen, Zhiqiang; Funda, Tomas; Chaudhary, Rajiv; Klingberg, Adam; Fundova, Irena; Suontama, Mari; Hallingback, Henrik; Bernhardsson, Carolina; Nystedt, Bjorn; Ingvarsson, Par K.; Sherwood, Ellen; Street, Nathaniel; Gyllensten, Ulf; Nilsson, Ove; Wu, Harry X.
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aMeta: an accurate and memory-efficient ancient metagenomic profiling workflow
err2023-10-23
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errPochon, Zoe; Bergfeldt, Nora; Kirdok, Emrah; Vicente, Mario; Naidoo, Thijessen; van der Valk, Tom; Altinisik, N. Ezgi; Krzewinska, Maja; Dalen, Love; Gotherstrom, Anders; Mirabello, Claudio; Unneberg, Per; Oskolkov, Nikolay
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Ghost admixture in eastern gorillas
err2023-07-27
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errPawar, Harvinder; Rymbekova, Aigerim; Cuadros-Espinoza, Sebastian; Huang, Xin; de Manuel, Marc; van der Valk, Tom; Lobon, Irene; Alvarez-Estape, Marina; Haber, Marc; Dolgova, Olga; Han, Sojung; Esteller-Cucala, Paula; Juan, David; Ayub, Qasim; Bautista, Ruben; Kelley, Joanna L.; Cornejo, Omar. E.; Lao, Oscar; Andres, Aida. M.; Guschanski, Katerina; Ssebide, Benard; Cranfield, Mike; Tyler-Smith, Chris; Xue, Yali; Prado-Martinez, Javier; Marques-Bonet, Tomas; Kuhlwilm, Martin
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Genomics of adaptive evolution in the woolly mammoth
err2023-05-01
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errDiez-del-Molino, David; Dehasque, Marianne; Chacon-Duque, J. Camilo; Pecnerova, Patricia; Tikhonov, Alexei; Protopopov, Albert; Plotnikov, Valeri; Kanellidou, Foteini; Nikolskiy, Pavel; Mortensen, Peter; Danilov, Gleb K.; Vartanyan, Sergey; Gilbert, M. Thomas P.; Lister, Adrian M.; Heintzman, Peter D.; van der Valk, Tom; Dalen, Love
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Genomic trajectories of a near-extinction event in the Chatham Island black robin
err2022-11-10
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errvon Seth, Johanna; van der Valk, Tom; Lord, Edana; Sigeman, Hanna; Olsen, Remi-Andre; Knapp, Michael; Kardailsky, Olga; Robertson, Fiona; Hale, Marie; Houston, Dave; Kennedy, Euan; Dalen, Love; Noren, Karin; Massaro, Melanie; Robertson, Bruce C.; Dussex, Nicolas
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Genomic evidence for inbreeding depression and purging of deleterious genetic variation in Indian tigers
err2021-11-30
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errKhan, Anubhab; Patel, Kaushalkumar; Shukla, Harsh; Viswanathan, Ashwin; van der Valk, Tom; Borthakur, Udayan; Nigam, Parag; Zachariah, Arun; Jhala, Yadavendradev, V; Kardos, Marty; Ramakrishnan, Uma
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Population genomics of the critically endangered kakapo
err2021-10-01
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errDussex, Nicolas; van der Valk, Tom; Morales, Hernan E.; Wheat, Christopher W.; Diez-del-Molino, David; von Seth, Johanna; Foster, Yasmin; Kutschera, Verena E.; Guschanski, Katerina; Rhie, Arang; Phillippy, Adam M.; Korlach, Jonas; Howe, Kerstin; Chow, William; Pelan, Sarah; Damas, Joanna D. Mendes; Lewin, Harris A.; Hastie, Alex R.; Formenti, Giulio; Fedrigo, Olivier; Guhlin, Joseph; Harrop, Thomas W. R.; Lec, Marissa F. Le; Dearden, Peter K.; Haggerty, Leanne; Martin, Fergal J.; Kodali, Vamsi; Thibaud-Nissen, Francoise; Iorns, David; Knapp, Michael; Gemmell, Neil J.; Robertson, Fiona; Moorhouse, Ron; Digby, Andrew; Eason, Daryl; Vercoe, Deidre; Howard, Jason; Jarvis, Erich D.; Robertson, Bruce C.; Dalen, Love
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Mammuthus sp. (Early and Middle Pleistocene Mammoths)
err2021-07-01
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errOAAI
errPecnerova, Patricia; Diez-del-Molino, David; van der Valk, Tom; Dehasque, Marianne; Gotherstrom, Anders; Dalen, Love
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Genomic insights into the conservation status of the world's last remaining Sumatran rhinoceros populations
err2021-04-26
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errvon Seth, Johanna; Dussex, Nicolas; Diez-del-Molino, David; van der Valk, Tom; Kutschera, Verena E.; Kierczak, Marcin; Steiner, Cynthia C.; Liu, Shanlin; Gilbert, M. Thomas P.; Sinding, Mikkel-Holger S.; Prost, Stefan; Guschanski, Katerina; Nathan, Senthilvel K. S. S.; Brace, Selina; Chan, Yvonne L.; Wheat, Christopher W.; Skoglund, Pontus; Ryder, Oliver A.; Goossens, Benoit; Gotherstrom, Anders; Dalen, Love
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Moose genomes reveal past glacial demography and the origin of modern lineages
err2020-12-02
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errDussex, Nicolas; Alberti, Federica; Heino, Matti T.; Olsen, Remi-Andre; van der Valk, Tom; Ryman, Nils; Laikre, Linda; Ahlgren, Hans; Askeyev, Igor, V; Askeyev, Oleg, V; Shaymuratova, Dilyara N.; Askeyev, Arthur O.; Doppes, Doris; Friedrich, Ronny; Lindauer, Susanne; Rosendahl, Wilfried; Aspi, Jouni; Hofreiter, Michael; Liden, Kerstin; Dalen, Love; Diez-del-Molino, David
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