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A genome-scale metabolic reconstruction resource of 247,092 diverse human microbes spanning multiple continents, age groups, and body sites Heinken, Almut; Hulshof, Timothy Otto; Nap, Bram; Martinelli, Filippo; Basile, Arianna; O'Brolchain, Amy; O'Sullivan, Neil Francis; Gallagher, Celine; Magee, Eimer; Mcdonagh, Francesca; Lalor, Ian; Bergin, Maeve; Evans, Phoebe; Daly, Rachel; Farrell, Ronan; Delaney, Rose Mary; Hill, Saoirse; Mcauliffe, Saoirse Roisin; Kilgannon, Trevor; Fleming, Ronan M. T.; Thinnes, Cyrille C.; Thiele, Ines Share Save
Examining the healthy human microbiome concept Joos, Raphaela; Boucher, Katy; Lavelle, Aonghus; Arumugam, Manimozhiyan; Blaser, Martin J.; Claesson, Marcus J.; Clarke, Gerard; Cotter, Paul D.; De Sordi, Luisa; Dominguez-Bello, Maria G.; Dutilh, Bas E.; Ehrlich, Stanislav D.; Ghosh, Tarini Shankar; Hill, Colin; Junot, Christophe; Lahti, Leo; Lawley, Trevor D.; Licht, Tine R.; Maguin, Emmanuelle; Makhalanyane, Thulani P.; Marchesi, Julian R.; Matthijnssens, Jelle; Raes, Jeroen; Ravel, Jacques; Salonen, Anne; Scanlan, Pauline D.; Shkoporov, Andrey; Stanton, Catherine; Thiele, Ines; Tolstoy, Igor; Walter, Jens; Yang, Bo; Yutin, Natalia; Zhernakova, Alexandra; Zwart, Hub; Dore, Joel D.; Ross, R. Paul Share Save
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A genome-scale metabolic model of a globally disseminated hyperinvasive M1 strain of Streptococcus pyogenes Hirose, Yujiro; Zielinski, Daniel C.; Poudel, Saugat; Rychel, Kevin; Baker, Jonathon L.; Toya, Yoshihiro; Yamaguchi, Masaya; Heinken, Almut; Thiele, Ines; Kawabata, Shigetada; Palsson, Bernhard O.; Nizet, Victor Share Save
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Whole-body metabolic modelling reveals microbiome and genomic interactions on reduced urine formate levels in Alzheimer's disease Martinelli, Filippo; Heinken, Almut; Henning, Ann-Kristin; Ulmer, Maria A.; Hensen, Tim; Gonzalez, Antonio; Arnold, Matthias; Asthana, Sanjay; Budde, Kathrin; Engelman, Corinne D.; Estaki, Mehrbod; Grabe, Hans-Joergen; Heston, Margo B.; Johnson, Sterling; Kastenmueller, Gabi; Martino, Cameron; Mcdonald, Daniel; Rey, Federico E.; Kilimann, Ingo; Peters, Olive; Wang, Xiao; Spruth, Eike Jakob; Schneider, Anja; Fliessbach, Klaus; Wiltfang, Jens; Hansen, Niels; Glanz, Wenzel; Buerger, Katharina; Janowitz, Daniel; Laske, Christoph; Munk, Matthias H.; Spottke, Annika; Roy, Nina; Nauck, Matthias; Teipel, Stefan; Knight, Rob; Kaddurah-Daouk, Rima F.; Bendlin, Barbara B.; Hertel, Johannes; Thiele, Ines Share Save
A toolbox of machine learning software to support microbiome analysis Marcos-Zambrano, Laura Judith; Lopez-Molina, Victor Manuel; Bakir-Gungor, Burcu; Frohme, Marcus; Karaduzovic-Hadziabdic, Kanita; Klammsteiner, Thomas; Ibrahimi, Eliana; Lahti, Leo; Loncar-Turukalo, Tatjana; Dhamo, Xhilda; Simeon, Andrea; Nechyporenko, Alina; Pio, Gianvito; Przymus, Piotr; Sampri, Alexia; Trajkovik, Vladimir; Lacruz-Pleguezuelos, Blanca; Aasmets, Oliver; Araujo, Ricardo; Anagnostopoulos, Ioannis; Aydemir, Onder; Berland, Magali; Calle, M. Luz; Ceci, Michelangelo; Duman, Hatice; Gundogdu, Aycan; Havulinna, Aki S.; Kaka Bra, Kardokh Hama Najib; Kalluci, Eglantina; Karav, Sercan; Lode, Daniel; Lopes, Marta B.; May, Patrick; Nap, Bram; Nedyalkova, Miroslava; Paciencia, Ines; Pasic, Lejla; Pujolassos, Meritxell; Shigdel, Rajesh; Susin, Antonio; Thiele, Ines; Truica, Ciprian-Octavian; Wilmes, Paul; Yilmaz, Ercument; Yousef, Malik; Claesson, Marcus Joakim; Truu, Jaak; Carrillo de Santa Pau, Enrique Share Save
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The Effects of Hospitalisation on the Serum Metabolome in COVID-19 Patients Hensen, Tim; Faessler, Daniel; O'Mahony, Liam; Albrich, Werner C.; Barda, Beatrice; Garzoni, Christian; Kleger, Gian-Reto; Pietsch, Urs; Suh, Noemie; Hertel, Johannes; Thiele, Ines Share Save
Circulating metabolites modulated by diet are associated with depression van der Spek, Ashley; Stewart, Isobel D.; Kuehnel, Brigitte; Pietzner, Maik; Alshehri, Tahani; Gauss, Friederike; Hysi, Pirro G.; MahmoudianDehkordi, Siamak; Heinken, Almut; Luik, Annemarie I.; Ladwig, Karl-Heinz; Kastenmueller, Gabi; Menni, Cristina; Hertel, Johannes; Ikram, M. Arfan; de Mutsert, Renee; Suhre, Karsten; Gieger, Christian; Strauch, Konstantin; Voelzke, Henry; Meitinger, Thomas; Mangino, Massimo; Flaquer, Antonia; Waldenberger, Melanie; Peters, Annette; Thiele, Ines; Kaddurah-Daouk, Rima; Dunlop, Boadie W.; Rosendaal, Frits R.; Wareham, Nicholas J.; Spector, Tim D.; Kunze, Sonja; Grabe, Hans Joergen; Mook-Kanamori, Dennis O.; Langenberg, Claudia; van Duijn, Cornelia M.; Amin, Najaf Share Save
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Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine Heinken, Almut; Hertel, Johannes; Acharya, Geeta; Ravcheev, Dmitry A. A.; Nyga, Malgorzata; Okpala, Onyedika Emmanuel; Hogan, Marcus; Magnusdottir, Stefania; Martinelli, Filippo; Nap, Bram; Preciat, German; Edirisinghe, Janaka N. N.; Henry, Christopher S. S.; Fleming, Ronan M. T.; Thiele, Ines Share Save
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