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Wanding Zhou

university of pennsylvania

77H-index
248Paper Count
6.6WCitation Count
Published Papers 56
Publication Date
KnowYourCG: Facilitating base-level sparse methylome interpretation
err2025-10-24
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PREAI
errDavid C. Goldberg; Hongxiang Fu; Daniel Atkins; Ethan Moyer; Chin Nien Lee; Yanxiang Deng; Wanding Zhou
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Cell-free DNA methylomics identify tissue injury patterns in pediatric ARDS
err2025-10-22
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errOAAI
errYehya, Nadir; Till, Jacob E.; Srivastava, Nishi; Zhang, Donglan; Christie, Jason D.; Carpenter, Erica L.; Mangalmurti, Nilam S.; Zhou, Wanding
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A ternary-code DNA methylome atlas of mouse tissues
err2025-10-09
err0
errOAAI
errSol Moe Lee; David C. Goldberg; Cameron Cloud; Jared B. Parker; Christopher Krapp; Christian E. Loo; Elliot Kim; Ivan Zhao; Chengcheng Jin; Rishi Porecha; Marisa S. Bartolomei; Rahul M. Kohli; Wanding Zhou
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High-coverage allele-resolved single-cell DNA methylation profiling reveals cell lineage, X-inactivation state, and replication dynamics
err2025-07-08
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errOAAI
errNathan J. Spix; Walid Abi Habib; Zhouwei Zhang; Emily Eugster; Hsiao-yun Milliron; David Sokol; KwangHo Lee; Paula A. Nolte; Jamie L. Endicott; Kelly F. Krzyzanowski; Toshinori Hinoue; Jacob Morrison; Benjamin K. Johnson; Wanding Zhou; Hui Shen; Peter W. Laird
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Scalable screening of ternary-code DNA methylation dynamics associated with human traits
err2025-07-03
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errOAAI
errDavid C. Goldberg; Cameron Cloud; Sol Moe Lee; Bret Barnes; Steven Gruber; Elliot Kim; Anita Pottekat; Maximillian S. Westphal; Luana McAuliffe; Elisa Majounie; Manesh Kalayil Manian; Qingdi Zhu; Christine Tran; Mark Hansen; Jelena Stojakovic; Jared B. Parker; Rahul M. Kohli; Rishi Porecha; Nicole Renke; Wanding Zhou
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Ecological Realism Accelerates Epigenetic Aging in Mice
err2025-05-21
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errOAAI
errZipple, MN; Zhao, IV; Kuo, DC; Lee, SM; Sheehan, MJ; Zhou, WD
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UHRF1 ubiquitin ligase activity supports the maintenance of low-density CpG methylation
err2024-11-28
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errOAAI
errTiedemann, Rochelle L.; Hrit, Joel; Du, Qian; Wiseman, Ashley K.; Eden, Hope E.; Dickson, Bradley M.; Kong, Xiangqian; Chomiak, Alison A.; Vaughan, Robert M.; Tibben, Bailey M.; Hebert, Jakob M.; David, Yael; Zhou, Wanding; Baylin, Stephen B.; Jones, Peter A.; Clark, Susan J.; Rothbart, Scott B.
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The response to influenza vaccination is associated with DNA methylation-driven regulation of T cell innate antiviral pathways
err2024-08-21
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errOAAI
errFu, Hongxiang; Pickering, Harry; Rubbi, Liudmilla; Ross, Ted M.; Zhou, Wanding; Reed, Elaine F.; Pellegrini, Matteo
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PRC2-AgeIndex as a universal biomarker of aging and rejuvenation
err2024-07-16
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errOAAI
errMoqri, Mahdi; Cipriano, Andrea; Simpson, Daniel J.; Rasouli, Sajede; Murty, Tara; de Jong, Tineke Anna; Nachun, Daniel; Brandine, Guilherme de Sena; Ying, Kejun; Tarkhov, Andrei; Aberg, Karolina A.; van den Oord, Edwin; Zhou, Wanding; Smith, Andrew; Mackall, Crystal; Gladyshev, Vadim N.; Horvath, Steve; Snyder, Michael P.; Sebastiano, Vittorio
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Inflammatory and tissue injury marker dynamics in pediatric acute respiratory distress syndrome
err2024-04-04
err1
errOAAI
errYehya, Nadir; Booth, Thomas J.; Ardhanari, Gnana D.; Thompson, Jill M.; Lam, L. K. Metthew; Till, Jacob E.; Mai, Mark V.; Keim, Garrett; McKeone, Daniel J.; Halstead, E. Scott; Lahni, Patrick; Varisco, Brian M.; Zhou, Wanding; Carpenter, Erica L.; Christie, Jason D.; Mangalmurti, Nilam S.
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BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies
err2024-02-27
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errOAAI
errZhou, Wanding; Johnson, Benjamin K.; Morrison, Jacob; Beddows, Ian; Eapen, James; Katsman, Efrat; Semwal, Ayush; Habib, Walid Abi; Heo, Lyong; Laird, Peter W.; Berman, Benjamin P.; Triche Jr, Timothy J.; Shen, Hui
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Low-input and single-cell methods for Infinium DNA methylation BeadChips
err2024-02-26
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errOAAI
errLee, Sol Moe; Loo, Christian E.; Prasasya, Rexxi D.; Bartolomei, Marisa S.; Kohli, Rahul M.; Zhou, Wanding
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A signal processing and deep learning framework for methylation detection using Oxford Nanopore sequencing
err2024-02-16
err12
errOAAI
errAhsan, Mian Umair; Gouru, Anagha; Chan, Joe; Zhou, Wanding; Wang, Kai
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Universal DNA methylation age across mammalian tissues (vol 3, pg 1144, 2023)
err2023-09-06
err2
errOAAI
errLu, A. T.; Fei, Z.; Haghani, A.; Robeck, T. R.; Zoller, J. A.; Li, C. Z.; Lowe, R.; Yan, Q.; Zhang, J.; Vu, H.; Ablaeva, J.; Acosta-Rodriguez, V. A.; Adams, D. M.; Almunia, J.; Aloysius, A.; Ardehali, R.; Arneson, A.; Baker, C. S.; Banks, G.; Belov, K.; Bennett, N. C.; Black, P.; Blumstein, D. T.; Bors, E. K.; Breeze, C. E.; Brooke, R. T.; Brown, J. L.; Carter, G. G.; Caulton, A.; Cavin, J. M.; Chakrabarti, L.; Chatzistamou, I.; Chen, H.; Cheng, K.; Chiavellini, P.; Choi, O. W.; Clarke, S. M.; Cooper, L. N.; Cossette, M. L.; Day, J.; DeYoung, J.; DiRocco, S.; Dold, C.; Ehmke, E. E.; Emmons, C. K.; Emmrich, S.; Erbay, E.; Erlacher-Reid, C.; Faulkes, C. G.; Ferguson, S. H.; Finno, C. J.; Flower, J. E.; Gaillard, J. M.; Garde, E.; Gerber, L.; Gladyshev, V. N.; Gorbunova, V.; Goya, R. G.; Grant, M. J.; Green, C. B.; Hales, E. N.; Hanson, M. B.; Hart, D. W.; Haulena, M.; Herrick, K.; Hogan, A. N.; Hogg, C. J.; Hore, T. A.; Huang, T.; Izpisua Belmonte, J. C.; Jasinska, A. J.; Jones, G.; Jourdain, E.; Kashpur, O.; Katcher, H.; Katsumata, E.; Kaza, V.; Kiaris, H.; Kobor, M. S.; Kordowitzki, P.; Koski, W. R.; Kruetzen, M.; Kwon, S. B.; Larison, B.; Lee, S. G.; Lehmann, M.; Lemaitre, J. F.; Levine, A. J.; Li, C.; Li, X.; Lim, A. R.; Lin, D. T. S.; Lindemann, D. M.; Little, T. J.; Macoretta, N.; Maddox, D.; Matkin, C. O.; Mattison, J. A.; McClure, M.; Mergl, J.; Meudt, J. J.; Montano, G. A.; Mozhui, K.; Munshi-South, J.; Naderi, A.; Nagy, M.; Narayan, P.; Nathanielsz, P. W.; Nguyen, N. B.; Niehrs, C.; O'Brien, J. K.; O'Tierney Ginn, P.; Odom, D. T.; Ophir, A. G.; Osborn, S.; Ostrander, E. A.; Parsons, K. M.; Paul, K. C.; Pellegrini, M.; Peters, K. J.; Pedersen, A. B.; Petersen, J. L.; Pietersen, D. W.; Pinho, G. M.; Plassais, J.; Poganik, J. R.; Prado, N. A.; Reddy, P.; Rey, B.; Ritz, B. R.; Robbins, J.; Rodriguez, M.; Russell, J.; Rydkina, E.; Sailer, L. L.; Salmon, A. B.; Sanghavi, A.; Schachtschneider, K. M.; Schmitt, D.; Schmitt, T.; Schomacher, L.; Schook, L. B.; Sears, K. E.; Seifert, A. W.; Seluanov, A.; Shafer, A. B. A.; Shanmuganayagam, D.; Shindyapina, A. V.; Simmons, M.; Singh, K.; Sinha, I.; Slone, J.; Snell, R. G.; Soltanmaohammadi, E.; Spangler, M. L.; Spriggs, M. C.; Staggs, L.; Stedman, N.; Steinman, K. J.; Stewart, D. T.; Sugrue, V. J.; Szladovits, B.; Takahashi, J. S.; Takasugi, M.; Teeling, E. C.; Thompson, M. J.; Van Bonn, B.; Vernes, S. C.; Villar, D.; Vinters, H. V.; Wallingford, M. C.; Wang, N.; Wayne, R. K.; Wilkinson, G. S.; Williams, C. K.; Williams, R. W.; Yang, X. W.; Yao, M.; Young, B. G.; Zhang, B.; Zhang, Z.; Zhao, P.; Zhao, Y.; Zhou, W.; Zimmermann, J.; Ernst, J.; Raj, K.; Horvath, S.
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Universal DNA methylation age across mammalian tissues
err2023-08-10
err94
errOAAI
errLu, A. T.; Fei, Z.; Haghani, A.; Robeck, T. R.; Zoller, J. A.; Li, C. Z.; Lowe, R.; Yan, Q.; Zhang, J.; Vu, H.; Ablaeva, J.; Acosta-Rodriguez, V. A.; Adams, D. M.; Almunia, J.; Aloysius, A.; Ardehali, R.; Arneson, A.; Baker, C. S.; Banks, G.; Belov, K.; Bennett, N. C.; Black, P.; Blumstein, D. T.; Bors, E. K.; Breeze, C. E.; Brooke, R. T.; Brown, J. L.; Carter, G. G.; Caulton, A.; Cavin, J. M.; Chakrabarti, L.; Chatzistamou, I.; Chen, H.; Cheng, K.; Chiavellini, P.; Choi, O. W.; Clarke, S. M.; Cooper, L. N.; Cossette, M. L.; Day, J.; DeYoung, J.; DiRocco, S.; Dold, C.; Ehmke, E. E.; Emmons, C. K.; Emmrich, S.; Erbay, E.; Erlacher-Reid, C.; Faulkes, C. G.; Ferguson, S. H.; Finno, C. J.; Flower, J. E.; Gaillard, J. M.; Garde, E.; Gerber, L.; Gladyshev, V. N.; Gorbunova, V.; Goya, R. G.; Grant, M. J.; Green, C. B.; Hales, E. N.; Hanson, M. B.; Hart, D. W.; Haulena, M.; Herrick, K.; Hogan, A. N.; Hogg, C. J.; Hore, T. A.; Huang, T.; Izpisua Belmonte, J. C.; Jasinska, A. J.; Jones, G.; Jourdain, E.; Kashpur, O.; Katcher, H.; Katsumata, E.; Kaza, V.; Kiaris, H.; Kobor, M. S.; Kordowitzki, P.; Koski, W. R.; Kruetzen, M.; Kwon, S. B.; Larison, B.; Lee, S. G.; Lehmann, M.; Lemaitre, J. F.; Levine, A. J.; Li, C.; Li, X.; Lim, A. R.; Lin, D. T. S.; Lindemann, D. M.; Little, T. J.; Macoretta, N.; Maddox, D.; Matkin, C. O.; Mattison, J. A.; McClure, M.; Mergl, J.; Meudt, J. J.; Montano, G. A.; Mozhui, K.; Munshi-South, J.; Naderi, A.; Nagy, M.; Narayan, P.; Nathanielsz, P. W.; Nguyen, N. B.; Niehrs, C.; O'Brien, J. K.; O'Tierney Ginn, P.; Odom, D. T.; Ophir, A. G.; Osborn, S.; Ostrander, E. A.; Parsons, K. M.; Paul, K. C.; Pellegrini, M.; Peters, K. J.; Pedersen, A. B.; Petersen, J. L.; Pietersen, D. W.; Pinho, G. M.; Plassais, J.; Poganik, J. R.; Prado, N. A.; Reddy, P.; Rey, B.; Ritz, B. R.; Robbins, J.; Rodriguez, M.; Russell, J.; Rydkina, E.; Sailer, L. L.; Salmon, A. B.; Sanghavi, A.; Schachtschneider, K. M.; Schmitt, D.; Schmitt, T.; Schomacher, L.; Schook, L. B.; Sears, K. E.; Seifert, A. W.; Seluanov, A.; Shafer, A. B. A.; Shanmuganayagam, D.; Shindyapina, A. V.; Simmons, M.; Singh, K.; Sinha, I.; Slone, J.; Snell, R. G.; Soltanmaohammadi, E.; Spangler, M. L.; Spriggs, M. C.; Staggs, L.; Stedman, N.; Steinman, K. J.; Stewart, D. T.; Sugrue, V. J.; Szladovits, B.; Takahashi, J. S.; Takasugi, M.; Teeling, E. C.; Thompson, M. J.; Van Bonn, B.; Vernes, S. C.; Villar, D.; Vinters, H. V.; Wallingford, M. C.; Wang, N.; Wayne, R. K.; Wilkinson, G. S.; Williams, C. K.; Williams, R. W.; Yang, X. W.; Yao, M.; Young, B. G.; Zhang, B.; Zhang, Z.; Zhao, P.; Zhao, Y.; Zhou, W.; Zimmermann, J.; Ernst, J.; Raj, K.; Horvath, S.
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PyComplexHeatmap: A Python package to visualize multimodal genomics data
errIMETA
IF33.2
err2023-05-25
err5
errOAAI
errDing, Wubin; Goldberg, David; Zhou, Wanding
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Comparative epigenome analysis using Infinium DNA methylation BeadChips
err2023-01-08
err8
errOAAI
errDing, Wubin; Kaur, Diljeet; Horvath, Steve; Zhou, Wanding
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Characterizing DNA methylation signatures of retinoblastoma using aqueous humor liquid biopsy
err2022-09-21
err34
errOAAI
errLi, Hong-Tao; Xu, Liya; Weisenberger, Daniel J.; Li, Meng; Zhou, Wanding; Peng, Chen-Ching; Stachelek, Kevin; Cobrinik, David; Liang, Gangning; Berry, Jesse L.
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DNA methylation dynamics and dysregulation delineated by high-throughput profiling in the mouse
err2022-07-01
err35
errOAAI
errZhou, Wanding; Hinoue, Toshinori; Barnes, Bret; Mitchell, Owen; Iqbal, Waleed; Lee, Sol Moe; Foy, Kelly K.; Lee, Kwang-Ho; Moyer, Ethan J.; Vanderark, Alexandra; Koeman, Julie M.; Ding, Wubin; Kalkat, Manpreet; Spix, Nathan J.; Eagleson, Bryn; Pospisilik, John Andrew; Szabo, Piroska E.; Bartolomei, Marisa S.; Schaaf, Nicole A. Vander; Kang, Liang; Wiseman, Ashley K.; Jones, Peter A.; Krawczyk, Connie M.; Adams, Marie; Porecha, Rishi; Chen, Brian H.; Shen, Hui; Laird, Peter W.
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