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K

Kimberly A. Smith

Allen Institute for Brain Science

55H-index
140Paper Count
3.1WCitation Count
Published Papers 23
Publication Date
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Connecting single-cell transcriptomes to projectomes in the mouse visual cortex
errNature
IF48.5
err2026-07-01
err0
errOAAI
errStaci A. Sorensen; Nathan W. Gouwens; Yun Wang; Matt Mallory; Agata Budzillo; Rachel Dalley; Brian R. Lee; Olga Gliko; Hsien-chi Kuo; Xiuli Kuang; Rusty Mann; Leila Ahmadinia; Lauren Alfiler; Fahimeh Baftizadeh; Katherine S. Baker; Sarah Bannick; Darren Bertagnolli; Kris Bickley; Phil Bohn; Jasmine Bomben; Chris Bowman; Gabriella Boyer; Krissy Brouner; Dillan Brown; Alex Cahoon; Natalie Chen; Chao Chen; Kai Chen; Maggie Chvilicek; Forrest Collman; Tanya L. Daigle; Tim Dawes; Rebecca de Frates; Nick Dee; Maxwell DePartee; Tom Egdorf; Laila El-Hifnawi; Rachel Enstrom; Luke Esposito; Colin Farrell; Rohan Gala; Clare Gamlin; Amanda Gary; Andrew Glomb; Olena Gerasymchuk; Jeff Goldy; Hong Gu; Kristen Hadley; Mike Hawrylycz; Alex Henry; Dijon Hill; Karla E. Hirokawa; Zili Huang; Katelyn Johnson; Zoe Juneau; Sara Kebede; Lisa Kim; Lauren Kruse; Changkyu Lee; Arielle L. Leon; Phil Lesnar; Quinn Lheureux; Anan Li; Yaoyao Li; Elizabeth Liang; Katie Link; Michelle Maxwell; Medea McGraw; Delissa A. McMillen; Alice Mukora; Lindsay Ng; Thomas Ochoa; Aaron Oldre; Daniel Park; Christina Alice Pom; Zoran Popovich; Lydia Potekhina; Ram Rajanbabu; Shea Ransford; Melissa R. Reding; Augustin Ruiz; David Sandman; Martin Schroedter; Josh Sevigny; Lyudmila Shulga; La’Akea Siverts; Cliff R. Slaughterbeck; Kimberly A. Smith; Michelle Stoecklin; Josef Sulc; Susan M. Sunkin; Michael Tieu; Jonathan T. Ting; Jessica Trinh; Ramel Velasco; Sara Vargas; Dave Vumbaco; Miranda Walker; Micheal Wang; Adrian Wanner; Jack Waters; Mirah Wells; Grace Williams; Julia A. Wilson; Wei Xiong; Ed S. Lein; Jim Berg; Brian E. Kalmbach; Shenqin Yao; Hui Gong; Qingming Luo; Quanxin Wang; Lydia Ng; Uygar Sümbül; Zizhen Yao; Tim Jarsky; Bosiljka Tasic; Hongkui Zeng
errShare
errSave
Technical and biological sources of noise confound multiplexed enhancer AAV screening
errNature Communications
IF15.7
err2026-04-28
err0
errOAAI
errAvery C. Hunker; John K. Mich; Naz Taskin; Amy Torkelson; Trangthanh Cardenas; Jean-Benoît Lalanne; Joseph T. Mahoney; Darren Bertagnolli; Anish Bhaswanth Chakka; Rushil Chakrabarty; Nicholas P. Donadio; Rebecca Ferrer; Molly Gasperini; Jeff Goldy; Junitta Guzman; Kelly Jin; Shannon Khem; Rana Kutsal; Refugio A. Martinez; Dakota Newman; Nick Pena; Christine Rimorin; Dana Rocha; Nadiya V. Shapovalova; Michael Tieu; Natalie Weed; Thomas Zhou; Rebecca Hodge; Shenqin Yao; Jay Shendure; Kimberly A. Smith; Ed S. Lein; Bosiljka Tasic; Boaz P. Levi; Jonathan T. Ting
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errSave
HCN channels reveal conserved and divergent physiology in supragranular pyramidal neurons in primate species
errCommunications Biology
IF5.1
err2026-01-20
err0
errOAAI
errCristina Radaelli; Matthew Schmitz; Xiao-Ping Liu; Scott Sawchuk; Ximena Opitz-Araya; Mark Hudson; Naz Taskin; Darren Bertagnolli; Jeff Goldy; Andrew L. Ko; Benjamin L. Grannan; Jason S. Hauptman; Anoop P. Patel; Charles Cobbs; Kimberly A. Smith; William J. Spain; Ed S. Lein; Trygve Bakken; Nikolai C. Dembrow; Jonathan T. Ting; Brian E. Kalmbach
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errSave
Transcriptomic and spatial organization of telencephalic GABAergic neurons
errNature
IF48.5
err2025-11-05
err0
errOAAI
errCindy T. J. van Velthoven; Yuan Gao; Michael Kunst; Changkyu Lee; Delissa McMillen; Anish Bhaswanth Chakka; Tamara Casper; Michael Clark; Rushil Chakrabarty; Scott Daniel; Tim Dolbeare; Rebecca Ferrer; Jessica Gloe; Jeff Goldy; Junitta Guzman; Carliana Halterman; Windy Ho; Mike J. Huang; Katelyn James; Rachel McCue; Beagan Nguy; Trangthanh Cardenas; Kara Ronellenfitch; Emma D. Thomas; Amy Torkelson; Chelsea M. Pagan; Lauren Kruse; Nick Dee; Lydia Ng; Jack Waters; Kimberly A. Smith; Bosiljka Tasic; Zizhen Yao; Hongkui Zeng
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errSave
Continuous cell-type diversification in mouse visual cortex development
errNature
IF48.5
err2025-11-05
err0
errOAAI
errYuan Gao; Cindy T. J. van Velthoven; Changkyu Lee; Emma D. Thomas; Rémi Mathieu; Angela P. Ayala; Stuard Barta; Darren Bertagnolli; Jazmin Campos; Trangthanh Cardenas; Daniel Carey; Tamara Casper; Anish Bhaswanth Chakka; Rushil Chakrabarty; Megan Chiang; Lindsey Ching; Michael Clark; Marie J. Desierto; Rebecca Ferrer; Jessica Gloe; Jeff Goldy; Nathan Guilford; Junitta Guzman; Carliana R. Halterman; Samantha D. Hastings; Daniel Hirschstein; Windy Ho; Katelyn James; Zoe Juneau; Naomi Martin; Rachel McCue; Emma Meyerdierks; Amanda C. Mitchell; Josh S. Nagra; Beagan Nguy; Thuc Nghi Nguyen; Paul Olsen; Alana A. Oyama; Nick Pena; Jacob Quon; Qingzhong Ren; Augustin Ruiz; Nadiya V. Shapovalova; Josef Sulc; Amy Torkelson; Alex Tran; Herman Tung; Nasmil Valera Cuevas; Justin Wang; Jeanelle Ariza; Delissa A. M. McMillen; Jack Waters; Michael Kunst; Kara Ronellenfitch; Boaz Levi; Michael J. Hawrylycz; Chelsea Pagan; Nick Dee; Kimberly A. Smith; Bosiljka Tasic; Zizhen Yao; Hongkui Zeng
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errSave
Distinctive physiology of molecularly identified medium spiny neurons in the macaque putamen
errCELL REPORTS
IF6.9
err2024-11-01
err0
errOAAI
errTing, Jonathan T.; Johansen, Nelson J.; Kalmbach, Brian E.; Taskin, Naz; Lee, Brian; Clark, Jason K.; Kendrick, Rennie; Ng, Lindsay; Radaelli, Cristina; Weed, Natalie; Enstrom, Rachel; Ransford, Shea; Redford, Ingrid; Walling-Bell, Sarah; Dalley, Rachel; Tieu, Michael; Goldy, Jeff; Jorstad, Nik; Smith, Kimberly; Bakken, Trygve; Lein, Ed S.; Owen, Scott F.
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errSave
Areal specializations in the morpho-electric and transcriptomic properties of primate layer 5 extratelencephalic projection neurons
errCELL REPORTS
IF6.9
err2024-09-01
err0
errOAAI
errDembrow, Nikolai C.; Sawchuk, Scott; Dalley, Rachel; Opitz-Araya, Ximena; Hudson, Mark; Radaelli, Cristina; Alfiler, Lauren; Walling-Bell, Sarah; Bertagnolli, Darren; Goldy, Jeff; Johansen, Nelson; Miller, Jeremy A.; Nasirova, Kamiliam; Owen, Scott F.; Parga-Becerra, Alejandro; Taskin, Naz; Tieu, Michael; Vumbaco, David; Weed, Natalie; Wilson, Julia; Lee, Brian R.; Smith, Kimberly A.; Sorensen, Staci A.; Spain, William J.; Lein, Ed S.; Perlmutter, Steve I.; Ting, Jonathan T.; Kalmbach, Brian E.
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Topographical and cell type-specific connectivity of rostral and caudal forelimb corticospinal neuron populations
errCELL REPORTS
IF6.9
err2024-04-01
err1
errOAAI
errCarmona, Lina Marcela; Thomas, Eric D.; Smith, Kimberly; Tasic, Bosiljka; Costa, Rui M.; Nelson, Anders
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errSave
Target cell-specific synaptic dynamics of excitatory to inhibitory neuron connections in supragranular layers of human neocortex
errELIFE
IF0
err2023-05-30
err13
errOAAI
errKim, Mean-Hwan; Radaelli, Cristina; Thomsen, Elliot R.; Monet, Deja; Chartrand, Thomas; Jorstad, Nikolas L.; Mahoney, Joseph T.; Taormina, Michael J.; Long, Brian; Baker, Katherine; Bakken, Trygve E.; Campagnola, Luke; Casper, Tamara; Clark, Michael; Dee, Nick; D'Orazi, Florence; Gamlin, Clare; Kalmbach, Brian E.; Kebede, Sara; Lee, Brian R.; Ng, Lindsay; Trinh, Jessica; Cobbs, Charles; Gwinn, Ryder P.; Keene, C. Dirk; Ko, Andrew L.; Ojemann, Jeffrey G.; Silbergeld, Daniel L.; Sorensen, Staci A.; Berg, Jim; Smith, Kimberly A.; Nicovich, Philip R.; Jarsky, Tim; Zeng, Hongkui; Ting, Jonathan T.; Levi, Boaz P.; Lein, Ed
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errSave
Single-cell and single-nucleus RNA-seq uncovers shared and distinct axes of variation in dorsal LGN neurons in mice, non-human primates, and humans
errELIFE
IF0
err2021-09-02
err40
errOAAI
errBakken, Trygve E.; van Velthoven, Cindy T. J.; Menon, Vilas; Hodge, Rebecca D.; Yao, Zizhen; Thuc Nghi Nguyen; Graybuck, Lucas T.; Horwitz, Gregory D.; Bertagnolli, Darren; Goldy, Jeff; Yanny, Anna Marie; Garren, Emma; Parry, Sheana; Casper, Tamara; Shehata, Soraya, I; Barkan, Eliza R.; Szafer, Aaron; Levi, Boaz P.; Dee, Nick; Smith, Kimberly A.; Sunkin, Susan M.; Bernard, Amy; Phillips, John; Hawrylycz, Michael J.; Koch, Christof; Murphy, Gabe J.; Lein, Ed; Zeng, Hongkui; Tasic, Bosiljka
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errSave
Signature morpho-electric, transcriptomic, and dendritic properties of human layer 5 neocortical pyramidal neurons
errNEURON
IF15
err2021-09-01
err50
errOAAI
errKalmbach, Brian E.; Hodge, Rebecca D.; Jorstad, Nikolas L.; Owen, Scott; de Frates, Rebecca; Yanny, Anna Marie; Dalley, Rachel; Mallory, Matt; Graybuck, Lucas T.; Radaelli, Cristina; Keene, C. Dirk; Gwinn, Ryder P.; Silbergeld, Daniel L.; Cobbs, Charles; Ojemann, Jeffrey G.; Ko, Andrew L.; Patel, Anoop P.; Ellenbogen, Richard G.; Bakken, Trygve E.; Daigle, Tanya L.; Dee, Nick; Lee, Brian R.; McGraw, Medea; Nicovich, Philip R.; Smith, Kimberly; Sorensen, Staci A.; Tasic, Bosiljka; Zeng, Hongkui; Koch, Christof; Lein, Ed S.; Ting, Jonathan T.
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errSave
Scaled, high fidelity electrophysiological, morphological, and transcriptomic cell characterization
errELIFE
IF0
err2021-08-13
err34
errOAAI
errLee, Brian R.; Budzillo, Agata; Hadley, Kristen; Miller, Jeremy A.; Jarsky, Tim; Baker, Katherine; Hill, DiJon; Kim, Lisa; Mann, Rusty; Ng, Lindsay; Oldre, Aaron; Rajanbabu, Ram; Trinh, Jessica; Vargas, Sara; Braun, Thomas; Dalley, Rachel A.; Gouwens, Nathan W.; Kalmbach, Brian E.; Kim, Tae Kyung; Smith, Kimberly A.; Soler-Llavina, Gilberto; Sorensen, Staci; Tasic, Bosiljka; Ting, Jonathan T.; Lein, Ed; Zeng, Hongkui; Murphy, Gabe J.; Berg, Jim
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errSave
Enhancer viruses for combinatorial cell-subclass-specific labeling
errNEURON
IF15
err2021-05-01
err82
errOAAI
errGraybuck, Lucas T.; Daigle, Tanya L.; Sedeno-Cortes, Adriana E.; Walker, Miranda; Kalmbach, Brian; Lenz, Garreck H.; Morin, Elyse; Thuc Nghi Nguyen; Garren, Emma; Bendrick, Jacqueline L.; Kim, Tae Kyung; Zhou, Thomas; Mortrud, Marty; Yao, Shenqin; Siverts, La' Akea; Larsen, Rachael; Gore, Bryan B.; Szelenyi, Eric R.; Trader, Cameron; Balaram, Pooja; van Velthoven, Cindy T. J.; Chiang, Megan; Mich, John K.; Dee, Nick; Goldy, Jeff; Cetin, Ali H.; Smith, Kimberly; Way, Sharon W.; Esposito, Luke; Yao, Zizhen; Gradinaru, Viviana; Sunkin, Susan M.; Lein, Ed; Levi, Boaz P.; Ting, Jonathan T.; Zeng, Hongkui; Tasic, Bosiljka
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errSave
Functional enhancer elements drive subclass-selective expression from mouse to primate neocortex
errCELL REPORTS
IF6.9
err2021-03-01
err90
errOAAI
errMich, John K.; Graybuck, Lucas T.; Hess, Erik E.; Mahoney, Joseph T.; Kojima, Yoshiko; Ding, Yi; Somasundaram, Saroja; Miller, Jeremy A.; Kalmbach, Brian E.; Radaelli, Cristina; Gore, Bryan B.; Weed, Natalie; Omstead, Victoria; Bishaw, Yemeserach; Shapovalova, Nadiya, V; Martinez, Refugio A.; Fong, Olivia; Yao, Shenqin; Mortrud, Marty; Chong, Peter; Loftus, Luke; Bertagnolli, Darren; Goldy, Jeff; Casper, Tamara; Dee, Nick; Opitz-Araya, Ximena; Cetin, Ali; Smith, Kimberly A.; Gwinn, Ryder P.; Cobbs, Charles; Ko, Andrew L.; Ojemann, Jeffrey G.; Keene, C. Dirk; Silbergeld, Daniel L.; Sunkin, Susan M.; Gradinaru, Viviana; Horwitz, Gregory D.; Zeng, Hongkui; Tasic, Bosiljka; Lein, Ed S.; Ting, Jonathan T.; Levi, Boaz P.
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errSave
Regional, Layer, and Cell-Type-Specific Connectivity of the Mouse Default Mode Network
errNEURON
IF15
err2021-02-01
err72
errOAAI
errWhitesell, Jennifer D.; Liska, Adam; Coletta, Ludovico; Hirokawa, Karla E.; Bohn, Phillip; Williford, Ali; Groblewski, Peter A.; Graddis, Nile; Kuan, Leonard; Knox, Joseph E.; Ho, Anh; Wakeman, Wayne; Nicovich, Philip R.; Nguyen, Thuc Nghi; van Velthoven, Cindy T. J.; Garren, Emma; Fong, Olivia; Naeemi, Maitham; Henry, Alex M.; Dee, Nick; Smith, Kimberly A.; Levi, Boaz; Feng, David; Ng, Lydia; Tasic, Bosiljka; Zeng, Hongkui; Mihalas, Stefan; Gozzi, Alessandro; Harris, Julie A.
errShare
errSave
Distinct Transcriptomic Cell Types and Neural Circuits of the Subiculum and Prosubiculum along the Dorsal-Ventral Axis
errCELL REPORTS
IF6.9
err2020-05-01
err43
errOAAI
errDing, Song-Lin; Yao, Zizhen; Hirokawa, Karla E.; Thuc Nghi Nguyen; Graybuck, Lucas T.; Fong, Olivia; Bohn, Phillip; Ngo, Kiet; Smith, Kimberly A.; Koch, Christof; Phillips, John W.; Lein, Ed S.; Harris, Julie A.; Tasic, Bosiljka; Zeng, Hongkui
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errSave
Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons
errNATURE COMMUNICATIONS
IF15.7
err2020-03-03
err55
errOAAI
errHodge, Rebecca D.; Miller, Jeremy A.; Novotny, Mark; Kalmbach, Brian E.; Ting, Jonathan T.; Bakken, Trygve E.; Aevermann, Brian D.; Barkan, Eliza R.; Berkowitz-Cerasano, Madeline L.; Cobbs, Charles; Diez-Fuertes, Francisco; Ding, Song-Lin; McCorrison, Jamison; Schork, Nicholas J.; Shehata, Soraya I.; Smith, Kimberly A.; Sunkin, Susan M.; Tran, Danny N.; Venepally, Pratap; Yanny, Anna Marie; Steemers, Frank J.; Phillips, John W.; Bernard, Amy; Koch, Christof; Lasken, Roger S.; Scheuermann, Richard H.; Lein, Ed S.
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errSave
Neuropathological and transcriptomic characteristics of the aged brain
errELIFE
IF0
err2017-11-09
err105
errOAAI
errMiller, Jeremy A.; Guillozet-Bongaarts, Angela; Gibbons, Laura E.; Postupna, Nadia; Renz, Anne; Beller, Allison E.; Sunkin, Susan M.; Ng, Lydia; Rose, Shannon E.; Smith, Kimberly A.; Szafer, Aaron; Barber, Chris; Bertagnolli, Darren; Bickley, Kristopher; Brouner, Krissy; Caldejon, Shiella; Chapin, Mike; Chua, Mindy L.; Coleman, Natalie M.; Cudaback, Eiron; Cuhaciyan, Christine; Dalley, Rachel A.; Dee, Nick; Desta, Tsega; Dolbeare, Tim A.; Dotson, Nadezhda I.; Fisher, Michael; Gaudreault, Nathalie; Gee, Garrett; Gilbert, Terri L.; Goldy, Jeff; Griffin, Fiona; Habel, Caroline; Haradon, Zeb; Hejazinia, Nika; Hellstern, Leanne L.; Horvath, Steve; Howard, Kim; Howard, Robert; Johal, Justin; Jorstad, Nikolas L.; Josephsen, Samuel R.; Kuan, Chihchau L.; Lai, Florence; Lee, Eric; Lee, Felix; Lemon, Tracy; Li, Xianwu; Marshall, Desiree A.; Melchor, Jose; Mukherjee, Shubhabrata; Nyhus, Julie; Pendergraft, Julie; Potekhina, Lydia; Rha, Elizabeth Y.; Rice, Samantha; Rosen, David; Sapru, Abharika; Schantz, Aimee; Shen, Elaine; Sherfield, Emily; Shi, Shu; Sodt, Andy J.; Thatra, Nivretta; Tieu, Michael; Wilson, Angela M.; Montine, Thomas J.; Larson, Eric B.; Bernard, Amy; Crane, Paul K.; Ellenbogen, Richard G.; Keene, C. Dirk; Lein, Ed
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Spatiotemporal dynamics of the postnatal developing primate brain transcriptome
errHUMAN MOLECULAR GENETICS
IF3.2
err2015-05-07
err31
errOAAI
errBakken, Trygve E.; Miller, Jeremy A.; Luo, Rui; Bernard, Amy; Bennett, Jeffrey L.; Lee, Chang-Kyu; Bertagnolli, Darren; Parikshak, Neelroop N.; Smith, Kimberly A.; Sunkin, Susan M.; Amaral, David G.; Geschwind, Daniel H.; Lein, Ed S.
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errSave
Anatomical characterization of Cre driver mice for neural circuit mapping and manipulation
errFRONTIERS IN NEURAL CIRCUITS
IF3
err2014-07-10
err369
errOAAI
errHarris, Julie A.; Hirokawa, Karla E.; Sorensen, Staci A.; Gu, Hong; Mills, Maya; Ng, Lydia L.; Bohn, Phillip; Mortrud, Marty; Ouellette, Benjamin; Kidney, Jolene; Smith, Kimberly A.; Dang, Chinh; Sunkin, Susan; Bernard, Amy; Oh, Seung Wook; Madisen, Linda; Zeng, Hongkui
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Research Directions

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Co-authors
Cooperation Journals
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Daniel H. Geschwind
H-index: 188 · Papers: 966
J
Jay Shendure
H-index: 167 · Papers: 662
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Christof Koch
H-index: 160 · Papers: 1.1K
S
Steve Horvath
H-index: 150 · Papers: 941
N
Nicholas J. Schork
H-index: 138 · Papers: 785
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