arrow
Back
K

Kaiyuan Zhu

Zhejiang Academy of Agricultural Sciences

10H-index
44Paper Count
270Citation Count
Published Papers 13
Publication Date
A gapless genome of early-diverging Asteraceae species, Gerbera, provides insights for ray floret differentiation in the capitula
err2026-03-01
err0
PREAI
errWen, Xiaohui; Li, Fan; Jin, Chunlian; Shan, Qinli; Yang, Chunmei; Wang, Bohao; Sun, Fuhui; Gao, Qiang; Liu, Huichun; Zhou, Xiaofan; Zhu, Kaiyuan; Zhang, Liangsheng; Li, Shenchong
errShare
errSave
Reconstructing the three-dimensional architecture of extrachromosomal DNA with ec3D
err2025-12-20
err0
errOAAI
errBiswanath Chowdhury; Kaiyuan Zhu; Chaohui Li; Jessica Alsing; Jens Luebeck; Maria E. Stefanova; Owen S. Chapman; Katerina Kraft; Shu Zhang; Jun Yi Stanley Lim; Yipeng Xie; Yoon Jung Kim; Sihan Wu; Lukas Chavez; Guy Nir; Anton G. Henssen; Paul S. Mischel; Howard Y. Chang; Vineet Bafna
errShare
errSave
Three-dimensional genome landscape of primary human cancers
err2025-05-12
err0
errOAAI
errYost, Kathryn E.; Zhao, Yanding; Hung, King L.; Zhu, Kaiyuan; Xu, Duo; Corces, M. Ryan; Shams, Shadi; Louie, Bryan H.; Sarmashghi, Shahab; Sundaram, Laksshman; Luebeck, Jens; Clarke, Stanley; Doane, Ashley S.; Granja, Jeffrey M.; Choudhry, Hani; Imielinski, Marcin; Cherniack, Andrew D.; Khurana, Ekta; Bafna, Vineet; Felau, Ina; Zenklusen, Jean C.; Laird, Peter W.; Curtis, Christina; Greenleaf, William J.; Chang, Howard Y.
errShare
errSave
Learning-augmented sketching offers improved performance for privacy preserving and secure GWAS
err2025-02-01
err0
errOAAI
errXu, Junyan; Zhu, Kaiyuan; Cai, Jieling; Kockan, Can; Dokmai, Natnatee; Cho, Hyunghoon; Woodruff, David P.; Sahinalp, S. Cenk
errShare
errSave
CoRAL accurately resolves extrachromosomal DNA genome structures with long-read sequencing
err2024-07-09
err1
errOAAI
errZhu, Kaiyuan; Jones, Matthew G.; Luebeck, Jens; Bu, Xinxin; Yi, Hyerim; Hung, King L.; Wong, Ivy Tsz-Lo; Zhang, Shu; Mischel, Paul S.; Chang, Howard Y.; Bafna, Vineet
errShare
errSave
Identification of intracellular bacteria from multiple single-cell RNA-seq platforms using CSI-Microbes
err2024-07-05
err2
errOAAI
errRobinson, Welles; Stone, Joshua K.; Schischlik, Fiorella; Gasmi, Billel; Kelly, Michael C.; Seibert, Charlie; Dadkhah, Kimia; Gertz, E. Michael; Lee, Joo Sang; Zhu, Kaiyuan; Ma, Lichun; Wang, Xin Wei; Sahinalp, S. Cenk; Patro, Rob; Leiserson, Mark D. M.; Harris, Curtis C.; Schaffer, Alejandro A.; Ruppin, Eytan
errShare
errSave
Strain level microbial detection and quantification with applications to single cell metagenomics
err2022-10-28
err4
errOAAI
errZhu, Kaiyuan; Schaeffer, Alejandro A.; Robinson, Welles; Xu, Junyan; Ruppin, Eytan; Ergun, A. Funda; Ye, Yuzhen; Sahinalp, S. Cenk
errShare
errSave
Privacy-preserving genotype imputation in a trusted execution environment
err2021-10-01
err16
errOAAI
errDokmai, Natnatee; Kockan, Can; Zhu, Kaiyuan; Wang, XiaoFeng; Sahinalp, S. Cenk; Cho, Hyunghoon
errShare
errSave
Sketching algorithms for genomic data analysis and querying in a secure enclave
err2020-03-04
err35
errOAAI
errKockan, Can; Zhu, Kaiyuan; Dokmai, Natnatee; Karpov, Nikolai; Kulekci, M. Oguzhan; Woodruff, David P.; Sahinalp, S. Cenk
errShare
errSave
Combinatorial Detection of Conserved Alteration Patterns for Identifying Cancer Subnetworks
err2019-04-11
err7
errOAAI
errHodzic, Ermin; Shrestha, Raunak; Zhu, Kaiyuan; Cheng, Kuoyuan; Collins, Colin C.; Sahinalp, S. Cenk
errShare
errSave
Optimal compressed representation of high throughput sequence data via light assembly (vol 9, 566, 2018)
err2018-04-26
err0
errOAAI
errGinart, Antonio A.; Hui, Joseph; Zhu, Kaiyuan; Numanagic, Ibrahim; Courtade, Thomas A.; Sahinalp, S. Cenk; Tse, David N.
errShare
errSave
Optimal compressed representation of high throughput sequence data via light assembly
err2018-02-08
err15
errOAAI
errGinart, Antonio A.; Hui, Joseph; Zhu, Kaiyuan; Numanagic, Ibrahim; Courtade, Thomas A.; Sahinalp, S. Cenk; Tse, David N.
errShare
errSave