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Lopez, Romain

University of California Berkeley

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Published Papers 9
Publication Date
The scverse project provides a computational ecosystem for single-cell omics data analysis
err2023-04-10
err60
PREAI
errVirshup, Isaac; Bredikhin, Danila; Heumos, Lukas; Palla, Giovanni; Sturm, Gregor; Gayoso, Adam; Kats, Ilia; Koutrouli, Mikaela; Berger, Bonnie; Pe'er, Dana; Regev, Aviv; Teichmann, Sarah; Finotello, Francesca; Wolf, F. Alexander; Yosef, Nir; Stegle, Oliver; Theis, Fabian; Angerer, Philipp; Bergen, Volker; Boyeau, Pierre D.; Buettner, Maren; Eraslan, Gokcen; Fischer, David; Frank, Max C.; Hong, Justin; Klein, Michal; Lange, Marius; Lopez, Romain; Lotfollahi, Mohammad; Luecken, Malte; Ramirez, Fidel A.; Regier, Jeffrey; Rybakov, Sergei; Schaar, Anna; Valiollah Pour Amiri, Valeh; Weiler, Philipp J.; Xing, Galen
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DestVI identifies continuums of cell types in spatial transcriptomics data
err2022-04-21
err81
errOAAI
errLopez, Romain; Li, Baoguo; Keren-Shaul, Hadas; Boyeau, Pierre; Kedmi, Merav; Pilzer, David; Jelinski, Adam; Yofe, Ido; David, Eyal; Wagner, Allon; Ergen, Can; Addadi, Yoseph; Golani, Ofra; Ronchese, Franca; Jordan, Michael I.; Amit, Ido; Yosef, Nir
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A Python library for probabilistic analysis of single-cell omics data
err2022-02-07
err208
errOAAI
errGayoso, Adam; Lopez, Romain; Xing, Galen; Boyeau, Pierre; Amiri, Valeh Valiollah Pour; Hong, Justin; Wu, Katherine; Jayasuriya, Michael; Mehlman, Edouard; Langevin, Maxime; Liu, Yining; Samaran, Jules; Misrachi, Gabriel; Nazaret, Achille; Clivio, Oscar; Xu, Chenling; Ashuach, Tal; Gabitto, Mariano; Lotfollahi, Mohammad; Svensson, Valentine; Beltrame, Eduardo da Veiga; Kleshchevnikov, Vitalii; Talavera-Lopez, Carlos; Pachter, Lior; Theis, Fabian J.; Streets, Aaron; Jordan, Michael I.; Regier, Jeffrey; Yosef, Nir
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Joint probabilistic modeling of single-cell multi-omic data with totalVI
err2021-02-15
err223
errOAAI
errGayoso, Adam; Steier, Zoe; Lopez, Romain; Regier, Jeffrey; Nazor, Kristopher L.; Streets, Aaron; Yosef, Nir
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Probabilistic harmonization and annotation of single-cell transcriptomics data with deep generative models
err2021-01-25
err198
errOAAI
errXu, Chenling; Lopez, Romain; Mehlman, Edouard; Regier, Jeffrey; Jordan, Michael, I; Yosef, Nir
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Scrublet: Computational Identification of Cell Doublets in Single-Cell Transcriptomic Data
err2019-04-01
err1.1K
errOAAI
errWolock, Samuel L.; Lopez, Romain; Klein, Allon M.
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Deep generative modeling for single-cell transcriptomics
err2018-11-30
err1.1K
errOAAI
errLopez, Romain; Regier, Jeffrey; Cole, Michael B.; Jordan, Michael I.; Yosef, Nir
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