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OmniPath: integrated knowledgebase for multi-omics analysis Turei, Denes; Schaul, Jonathan; Palacio-Escat, Nicolas; Bohar, Balazs; Bai, Yunfan; Ceccarelli, Francesco; Cevrim, Elif; Daley, Macabe; Darcan, Melih; Dimitrov, Daniel; Dogan, Tunca; Domingo-Fernandez, Daniel; Dugourd, Aurelien; Gabor, Attila; Gul, Lejla; Hall, Benjamin A.; Hoyt, Charles Tapley; Ivanova, Olga; Klein, Michal; Lawrence, Toby; Mananes, Diego; Modos, Dezso; Muller-Dott, Sophia; Olbei, Marton; Schmidt, Christina; Sen, Bunyamin; Theis, Fabian J.; Unlu, Atabey; Ulusoy, Erva; Valdeolivas, Alberto; Korcsmaros, Tamas; Saez-Rodriguez, Julio Share Save
METABOLIC REPROGRAMMING OF DEL(5Q) MDS HEMATOPOIETIC STEM CELLS WITH CSNK1A1 MUTATION Schmitz, Stephani; Pearce, Juliette; Fuchs, Stijn; Snoeren, Inge; Hoyer, Sergio Martinez; Dugourd, Aurelien; Franciosa, Giulia; van der Vorst, Emiel; Sole, Francesc; Saez-Rodriguez, Julio; Linkermann, Andreas; Olsen, Jesper; Gleitz, Helene; Schneider, Rebekka Share Save
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Non-invasive detection of bone marrow fibrosis in myeloproliferative neoplasms using cell-free RNA Saad, Mohamed; Fuchs, Stijn N. R.; Schalla, Carmen; Gotz, Katrin; Pritchard, Jessica E.; Flosdorf, Niclas; Benabid, Adam; Gleitz, Helene F. E.; Leimkuhler, Nils; Dugourd, Aurelien; Schneider, Rebekka K. Share Save
LIANA plus provides an all-in-one framework for cell-cell communication inference Dimitrov, Daniel; Schaefer, Philipp Sven Lars; Farr, Elias; Rodriguez-Mier, Pablo; Lobentanzer, Sebastian; Badia-i-Mompel, Pau; Dugourd, Aurelien; Tanevski, Jovan; Flores, Ricardo Omar Ramirez; Saez-Rodriguez, Julio Share Save
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Metabolic Communication by SGLT2 Inhibition Billing, Anja M.; Kim, Young Chul; Gullaksen, Soren; Schrage, Benedikt; Raabe, Janice; Hutzfeldt, Arvid; Demir, Fatih; Kovalenko, Elina; Lasse, Moritz; Dugourd, Aurelien; Fallegger, Robin; Klampe, Birgit; Jaegers, Johannes; Li, Qing; Kravtsova, Olha; Crespo-Masip, Maria; Palermo, Amelia; Fenton, Robert A.; Hoxha, Elion; Blankenberg, Stefan; Kirchhof, Paulus; Huber, Tobias B.; Laugesen, Esben; Zeller, Tanja; Chrysopoulou, Maria; Saez-Rodriguez, Julio; Magnussen, Christina; Eschenhagen, Thomas; Staruschenko, Alexander; Siuzdak, Gary; Poulsen, Per L.; Schwab, Clarissa; Cuello, Friederike; Vallon, Volker; Rinschen, Markus M. Share Save
Multiomic profiling of breast cancer cells uncovers stress MAPK-associated sensitivity to AKT degradation Erickson, Emily C.; You, Inchul; Perry, Grace; Dugourd, Aurelien; Donovan, Katherine A.; Crafter, Claire; Johannes, Jeffrey W.; Williamson, Stuart; Moss, Jennifer I.; Ros, Susana; Ziegler, Robert E.; Barry, Simon T.; Fischer, Eric S.; Gray, Nathanael S.; Madsen, Ralitsa R.; Toker, Alex Share Save
Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches Niarakis, Anna; Ostaszewski, Marek; Mazein, Alexander; Kuperstein, Inna; Kutmon, Martina; Gillespie, Marc E.; Funahashi, Akira; Acencio, Marcio Luis; Hemedan, Ahmed; Aichem, Michael; Klein, Karsten; Czauderna, Tobias; Burtscher, Felicia; Yamada, Takahiro G.; Hiki, Yusuke; Hiroi, Noriko F.; Hu, Finterly; Pham, Nhung; Ehrhart, Friederike; Willighagen, Egon L.; Valdeolivas, Alberto; Dugourd, Aurelien; Messina, Francesco; Esteban-Medina, Marina; Pena-Chilet, Maria; Rian, Kinza; Soliman, Sylvain; Aghamiri, Sara Sadat; Puniya, Bhanwar Lal; Naldi, Aurelien; Helikar, Tomas; Singh, Vidisha; Fernandez, Marco Farinas; Bermudez, Viviam; Tsirvouli, Eirini; Montagud, Arnau; Noel, Vincent; Ponce-de-Leon, Miguel; Maier, Dieter; Bauch, Angela; Gyori, Benjamin M.; Bachman, John A.; Luna, Augustin; Pinero, Janet; Furlong, Laura I.; Balaur, Irina; Rougny, Adrien; Jarosz, Yohan; Overall, Rupert W.; Phair, Robert; Perfetto, Livia; Matthews, Lisa; Rex, Devasahayam Arokia Balaya; Orlic-Milacic, Marija; Gomez, Luis Cristobal Monraz; De Meulder, Bertrand; Ravel, Jean Marie; Jassal, Bijay; Satagopam, Venkata; Wu, Guanming; Golebiewski, Martin; Gawron, Piotr; Calzone, Laurence; Beckmann, Jacques S.; Evelo, Chris T.; D'Eustachio, Peter; Schreiber, Falk; Saez-Rodriguez, Julio; Dopazo, Joaquin; Kuiper, Martin; Valencia, Alfonso; Wolkenhauer, Olaf; Kitano, Hiroaki; Barillot, Emmanuel; Auffray, Charles; Balling, Rudi; Schneider, Reinhard Share Save
Collaborative effect of Csnk1a1 haploinsufficiency and mutant p53 in Myc induction can promote leukemic transformation Fuchs, Stijn N. R.; Stalmann, Ursula S. A.; Snoeren, Inge A. M.; Bindels, Eric; Schmitz, Stephani; Banjanin, Bella; Hoogenboezem, Remco M.; van Herk, Stanley; Saad, Mohamed; Walter, Wencke; Haferlach, Torsten; Seillier, Lancelot; Saez-Rodriguez, Julio; Dugourd, Aurelien J. F.; Lehmann, Kjong-Van; Ben-Neriah, Yinon; Gleitz, Helene F. E.; Schneider, Rebekka K. Share Save
Mapping cardiac remodeling in chronic kidney disease Kaesler, Nadine; Cheng, Mingbo; Nagai, James; O'Sullivan, James; Peisker, Fabian; Bindels, Eric M. J.; Babler, Anne; Moellmann, Julia; Droste, Patrick; Franciosa, Giulia; Dugourd, Aurelien; Saez-Rodriguez, Julio; Neuss, Sabine; Lehrke, Michael; Boor, Peter; Goettsch, Claudia; Olsen, Jesper V.; Speer, Thimoteus; Lu, Tzong-Shi; Lim, Kenneth; Floege, Juergen; Denby, Laura; Costa, Ivan; Kramann, Rafael Share Save
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Dynamic partitioning of branched-chain amino acids-derived nitrogen supports renal cancer progression Sciacovelli, Marco; Dugourd, Aurelien; Jimenez, Lorea Valcarcel; Yang, Ming; Nikitopoulou, Efterpi; Costa, Ana S. H.; Tronci, Laura; Caraffini, Veronica; Rodrigues, Paulo; Schmidt, Christina; Ryan, Dylan Gerard; Young, Timothy; Zecchini, Vincent R.; Rossi, Sabrina H.; Massie, Charlie; Lohoff, Caroline; Masid, Maria; Hatzimanikatis, Vassily; Kuppe, Christoph; Von Kriegsheim, Alex; Kramann, Rafael; Gnanapragasam, Vincent; Warren, Anne Y.; Stewart, Grant D.; Erez, Ayelet; Vanharanta, Sakari; Saez-Rodriguez, Julio; Frezza, Christian Share Save
Pre-analytical processing of plasma and serum samples for combined proteome and metabolome analysis Gegner, Hagen M.; Naake, Thomas; Dugourd, Aurelien; Mueller, Torsten; Czernilofsky, Felix; Kliewer, Georg; Jaeger, Evelyn; Helm, Barbara; Kunze-Rohrbach, Nina; Klingmueller, Ursula; Hopf, Carsten; Mueller-Tidow, Carsten; Dietrich, Sascha; Saez-Rodriguez, Julio; Huber, Wolfgang; Hell, Rudiger; Poschet, Gernot; Krijgsveld, Jeroen Share Save
Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data Dimitrov, Daniel; Tuerei, Denes; Garrido-Rodriguez, Martin; Burmedi, Paul L.; Nagai, James S.; Boys, Charlotte; Flores, Ricardo O. Ramirez; Kim, Hyojin; Szalai, Bence; Costa, Ivan G.; Valdeolivas, Alberto; Dugourd, Aurelien; Saez-Rodriguez, Julio Share Save
Reducing lipid bilayer stress by monounsaturated fatty acids protects renal proximal tubules in diabetes Perez-Marti, Albert; Ramakrishnan, Suresh; Li, Jiayi; Dugourd, Aurelien; Molenaar, Martijn R.; De la Motte, Luigi R.; Grand, Kelli; Mansouri, Anis; Parisot, Melanie; Lienkamp, Soeren S.; Saez-Rodriguez, Julio; Simons, Matias Share Save
COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms (vol 17, e10387, 2021) Ostaszewski, Marek; Niarakis, Anna; Mazein, Alexander; Kuperstein, Inna; Phair, Robert; Orta-Resendiz, Aurelio; Singh, Vidisha; Aghamiri, Sara Sadat; Acencio, Marcio Luis; Glaab, Enrico; Ruepp, Andreas; Fobo, Gisela; Montrone, Corinna; Brauner, Barbara; Frishman, Goar; Monraz Gomez, Luis Cristobal; Somers, Julia; Hoch, Matti; Kumar Gupta, Shailendra; Scheel, Julia; Borlinghaus, Hanna; Czauderna, Tobias; Schreiber, Falk; Montagud, Arnau; Ponce de Leon, Miguel; Funahashi, Akira; Hiki, Yusuke; Hiroi, Noriko; Yamada, Takahiro G.; Drager, Andreas; Renz, Alina; Naveez, Muhammad; Bocskei, Zsolt; Messina, Francesco; Bornigen, Daniela; Fergusson, Liam; Conti, Marta; Rameil, Marius; Nakonecnij, Vanessa; Vanhoefer, Jakob; Schmiester, Leonard; Wang, Muying; Ackerman, Emily E.; Shoemaker, Jason E.; Zucker, Jeremy; Oxford, Kristie; Teuton, Jeremy; Kocakaya, Ebru; Summak, Gokce Yagmur; Hanspers, Kristina; Kutmon, Martina; Coort, Susan; Eijssen, Lars; Ehrhart, Friederike; Rex, D. A. B.; Slenter, Denise; Martens, Marvin; Pham, Nhung; Haw, Robin; Jassal, Bijay; Matthews, Lisa; Orlic-Milacic, Marija; Senff-Ribeiro, Andrea; Rothfels, Karen; Shamovsky, Veronica; Stephan, Ralf; Sevilla, Cristoffer; Varusai, Thawfeek; Ravel, Jean-Marie; Fraser, Rupsha; Ortseifen, Vera; Marchesi, Silvia; Gawron, Piotr; Smula, Ewa; Heirendt, Laurent; Satagopam, Venkata; Wu, Guanming; Riutta, Anders; Golebiewski, Martin; Owen, Stuart; Goble, Carole; Hu, Xiaoming; Overall, Rupert W.; Maier, Dieter; Bauch, Angela; Gyori, Benjamin M.; Bachman, John A.; Vega, Carlos; Groues, Valentin; Vazquez, Miguel; Porras, Pablo; Licata, Luana; Iannuccelli, Marta; Sacco, Francesca; Nesterova, Anastasia; Yuryev, Anton; de Waard, Anita; Turei, Denes; Luna, Augustin; Babur, Ozgun; Soliman, Sylvain; Valdeolivas, Alberto; Esteban-Medina, Marina; Pena-Chilet, Maria; Rian, Kinza; Helikar, Tomas; Puniya, Bhanwar Lal; Modos, Dezso; Treveil, Agatha; Olbei, Marton; De Meulder, Bertrand; Ballereau, Stephane; Dugourd, Aurelien; Naldi, Aurelien; Noel, Vincent; Calzone, Laurence; Sander, Chris; Demir, Emek; Korcsmaros, Tamas; Freeman, Tom C.; Auge, Franck; Beckmann, Jacques S.; Hasenauer, Jan; Wolkenhauer, Olaf; Willighagen, Egon L.; Pico, Alexander R.; Evelo, Chris T.; Gillespie, Marc E.; Stein, Lincoln D.; Hermjakob, Henning; D'Eustachio, Peter; Saez-Rodriguez, Julio; Dopazo, Joaquin; Valencia, Alfonso; Kitano, Hiroaki; Barillot, Emmanuel; Auffray, Charles; Balling, Rudi; Schneider, Reinhard Share Save
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