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Seager, James
university of calabria
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Published Papers 13
Publication Date
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- Citations
Empowering biological knowledgebases: advances in human-in-the-loop AI-driven literature curation
2026-01-01
0
Wood, Valerie; Jeffryes, Matt; Green, Andrew F.; Blum, Matthias; Orchard, Sandra; Panni, Simona; Quaglia, Federica; Rodriguez-Esteban, Raul; Seager, James; Tosatto, Silvio C. E.; Wittig, Ulrike; Harrison, Melissa
PREAI
The Gene Ontology knowledgebase in 2026
NUCLEIC ACIDS RESEARCH
2025-12-01
1
Aleksander, Suzi A.; Balhoff, James P.; Carbon, Seth; Cherry, J. Michael; Ebert, Dustin; Feuermann, Marc; Gaudet, Pascale; Harris, Nomi L.; Hill, David P.; Kalita, Patrick; Lee, Raymond; Mi, Huaiyu; Moxon, Sierra; Mungall, Christopher J.; Muruganujan, Anushya; Mushayahama, Tremayne; Sternberg, Paul W.; Thomas, Paul D.; Van Auken, Kimberly; Wong, Edith D.; Wood, Valerie; Ramsey, Jolene; Siegele, Deborah A.; Chisholm, Rex L.; Dodson, Robert; Fey, Petra; Aspromonte, Maria Cristina; Nugnes, Maria Victoria; Naser, Ximena Aixa Castro; Tosatto, Silvio C. E.; Giglio, Michelle; Nadendla, Suvarna; Antonazzo, Giulia; Attrill, Helen; Brown, Nicholas H.; Dos Santos, Gil; Marygold, Steven; Roper, Katja; Strelets, Victor; Tabone, Christopher J.; Thurmond, Jim; Zhou, Pinglei; Zaru, Rossana; Lovering, Ruth C.; Logie, Colin; Chen, Daqing; Naba, Alexandra; Christie, Karen; Corbani, Lori; Ni, Li; Sitnikov, Dmitry; Smith, Cynthia; Seager, James; Cooper, Laurel; Elser, Justin; Jaiswal, Pankaj; Gupta, Parul; Naithani, Sushma; Carme, Pascal; Rutherford, Kim; De Pons, Jeffrey L.; Dwinell, Melinda R.; Hayman, G. Thomas; Kaldunski, Mary L.; Kwitek, Anne E.; Laulederkind, Stanley J. F.; Tutaj, Marek A.; Vedi, Mahima; Wang, Shur-Jen; D'eustachio, Peter; Aimo, Lucila; Axelsen, Kristian; Bridge, Alan; Hyka-Nouspikel, Nevila; Morgat, Anne; Goldbold, Gene; Engel, Stacia R.; Miyasato, Stuart R.; Nash, Robert S.; Sherlock, Gavin; Weng, Shuai; Bakker, Erika; Berardini, Tanya Z.; Reiser, Leonore; Auchincloss, Andrea; Argoud-Puy, Ghislaine; Blatter, Marie-Claude; Boutet, Emmanuel; Breuza, Lionel; Casals-Casas, Cristina; Coudert, Elisabeth; Estreicher, Anne; Famiglietti, Maria Livia; Gos, Arnaud; Gruaz-Gumowski, Nadine; Hulo, Chantal; Jungo, Florence; Mercier, Philippe Le; Lieberherr, Damien; Masson, Patrick; Pedruzzi, Ivo; Pourcel, Lucille; Poux, Sylvain; Rivoire, Catherine; Sundaram, Shyamala; Bateman, Alex; Adesina, Aduragbemi; Bowler-Barnett, Emily; Carpentier, David; Denny, Paul; Ignatchenko, Alexandr; Ishtiaq, Rizwan; Lock, Antonia; Lussi, Yvonne; Magrane, Michele; Martin, Maria J.; Orchard, Sandra; Raposo, Pedro; Speretta, Elena; Tyagi, Nidhi; Urakova, Nadya; Warner, Kate; Yu, Conny Wing-Hen; Chan, Juancarlos; Diamantakis, Stavros; Quinton-Tulloch, Mark; Raciti, Daniela; Fisher, Malcolm; James-Zorn, Christina; Ponferrada, Virgilio; Zorn, Aaron; Howe, Doug; Ramachandran, Sridhar; Ruzicka, Leyla; Westerfield, Monte
IF13.1
PREAI
The Unified Phenotype Ontology : a framework for cross-species integrative phenomics
GENETICS
2025-03-17
0
OAAI
Matentzoglu, Nicolas; Bello, Susan M.; Stefancsik, Ray; Alghamdi, Sarah M.; Anagnostopoulos, Anna, V; Balhoff, James P.; Balk, Meghan A.; Bradford, Yvonne M.; Bridges, Yasemin; Callahan, Tiffany J.; Caufield, Harry; Cuzick, Alayne; Carmody, Leigh C.; Caron, Anita R.; de Souza, Vinicius; Engel, Stacia R.; Fey, Petra; Fisher, Malcolm; Gehrke, Sarah; Grove, Christian; Hansen, Peter; Harris, Nomi L.; Harris, Midori A.; Harris, Laura; Ibrahim, Arwa; Jacobsen, Julius O. B.; Koehler, Sebastian; Mcmurry, Julie A.; Munoz-Fuentes, Violeta; Munoz-Torres, Monica C.; Parkinson, Helen; Pendlington, Zoe M.; Pilgrim, Clare; Robb, Sofia M. C.; Robinson, Peter N.; Seager, James; Segerdell, Erik; Smedley, Damian; Sollis, Elliot; Toro, Sabrina; Vasilevsky, Nicole; Wood, Valerie; Haendel, Melissa A.; Mungall, Christopher J.; Mclaughlin, James A.; Osumi-Sutherland, David
IF5.1
PHI-base - the multi-species pathogen-host interaction database in 2025
NUCLEIC ACIDS RESEARCH
2024-11-26
2
OAAI
Urban, Martin; Cuzick, Alayne; Seager, James; Nonavinakere, Nagashree; Sahoo, Jahobanta; Sahu, Pallavi; Iyer, Vijay Laksmi; Khamari, Lokanath; Martinez, Manuel Carbajo; Hammond-Kosack, Kim E.
IF13.1
The Gene Ontology knowledgebase in 2023
GENETICS
2023-03-03
774
OAAI
Aleksander, Suzi A.; Balhoff, James; Carbon, Seth; Cherry, J. Michael; Drabkin, Harold J.; Ebert, Dustin; Feuermann, Marc; Gaudet, Pascale; Harris, Nomi L.; Hill, David P.; Lee, Raymond; Mi, Huaiyu; Moxon, Sierra; Mungall, Christopher J.; Muruganugan, Anushya; Mushayahama, Tremayne; Sternberg, Paul W.; Thomas, Paul D.; Van Auken, Kimberly; Ramsey, Jolene; Siegele, Deborah A.; Chisholm, Rex L.; Fey, Petra; Aspromonte, Maria Cristina; Nugnes, Maria Victoria; Quaglia, Federica; Tosatto, Silvio; Giglio, Michelle; Nadendla, Suvarna; Antonazzo, Giulia; Attrill, Helen; dos Santos, Gil; Marygold, Steven; Strelets, Victor; Tabone, Christopher J.; Thurmond, Jim; Zhou, Pinglei; Ahmed, Saadullah H.; Asanitthong, Praoparn; Luna Buitrago, Diana; Erdol, Meltem N.; Gage, Matthew C.; Ali Kadhum, Mohamed; Li, Kan Yan Chloe; Long, Miao; Michalak, Aleksandra; Pesala, Angeline; Pritazahra, Armalya; Saverimuttu, Shirin C. C.; Su, Renzhi; Thurlow, Kate E.; Lovering, Ruth C.; Logie, Colin; Oliferenko, Snezhana; Blake, Judith; Christie, Karen; Corbani, Lori; Dolan, Mary E.; Sitnikov, Dmitry; Smith, Cynthia; Cuzick, Alayne; Seager, James; Cooper, Laurel; Elser, Justin; Jaiswal, Pankaj; Gupta, Parul; Naithani, Sushma; Lera-Ramirez, Manuel; Rutherford, Kim; Wood, Valerie; De Pons, Jeffrey L.; Dwinell, Melinda R.; Hayman, G. Thomas; Kaldunski, Mary L.; Kwitek, Anne E.; Laulederkind, Stanley J. F.; Tutaj, Marek A.; Vedi, Mahima; Wang, Shur-Jen; D'Eustachio, Peter; Aimo, Lucila; Axelsen, Kristian; Bridge, Alan; Hyka-Nouspikel, Nevila; Morgat, Anne; Engel, Stacia R.; Karra, Kalpana; Miyasato, Stuart R.; Nash, Robert S.; Skrzypek, Marek S.; Weng, Shuai; Wong, Edith D.; Bakker, Erika; Berardini, Tanya Z.; Reiser, Leonore; Auchincloss, Andrea; Argoud-Puy, Ghislaine; Blatter, Marie-Claude; Boutet, Emmanuel; Breuza, Lionel; Casals-Casas, Cristina; Coudert, Elisabeth; Estreicher, Anne; Livia Famiglietti, Maria; Gos, Arnaud; Gruaz-Gumowski, Nadine; Hulo, Chantal; Jungo, Florence; Le Mercier, Philippe; Lieberherr, Damien; Masson, Patrick; Pedruzzi, Ivo; Pourcel, Lucille; Poux, Sylvain; Rivoire, Catherine; Sundaram, Shyamala; Bateman, Alex; Bowler-Barnett, Emily; Bye-A-Jee, Hema; Denny, Paul; Ignatchenko, Alexandr; Ishtiaq, Rizwan; Lock, Antonia; Lussi, Yvonne; Magrane, Michele; Martin, Maria J.; Orchard, Sandra; Raposo, Pedro; Speretta, Elena; Tyagi, Nidhi; Warner, Kate; Zaru, Rossana; Diehl, Alexander D.; Chan, Juancarlos; Diamantakis, Stavros; Raciti, Daniela; Zarowiecki, Magdalena; Fisher, Malcolm; James-Zorn, Christina; Ponferrada, Virgilio; Zorn, Aaron; Ramachandran, Sridhar; Ruzicka, Leyla; Westerfield, Monte
IF5.1
Ensembl Genomes 2022: an expanding genome resource for non-vertebrates
NUCLEIC ACIDS RESEARCH
2021-11-13
167
OAAI
Yates, Andrew D.; Allen, James; Amode, Ridwan M.; Azov, Andrey G.; Barba, Matthieu; Becerra, Andres; Bhai, Jyothish; Campbell, Lahcen, I; Martinez, Manuel Carbajo; Chakiachvili, Marc; Chougule, Kapeel; Christensen, Mikkel; Contreras-Moreira, Bruno; Cuzick, Alayne; Fioretto, Luca Da Rin; Davis, Paul; De Silva, Nishadi H.; Diamantakis, Stavros; Dyer, Sarah; Elser, Justin; Filippi, Carla, V; Gall, Astrid; Grigoriadis, Dionysios; Guijarro-Clarke, Cristina; Gupta, Parul; Hammond-Kosack, Kim E.; Howe, Kevin L.; Jaiswal, Pankaj; Kaikala, Vinay; Kumar, Vivek; Kumari, Sunita; Langridge, Nick; Le, Tuan; Luypaert, Manuel; Maslen, Gareth L.; Maurel, Thomas; Moore, Benjamin; Muffato, Matthieu; Mushtaq, Aleena; Naamati, Guy; Naithani, Sushma; Olson, Andrew; Parker, Anne; Paulini, Michael; Pedro, Helder; Perry, Emily; Preece, Justin; Quinton-Tulloch, Mark; Rodgers, Faye; Rosello, Marc; Ruffier, Magali; Seager, James; Sitnik, Vasily; Szpak, Michal; Tate, John; Tello-Ruiz, Marcela K.; Trevanion, Stephen J.; Urban, Martin; Ware, Doreen; Wei, Sharon; Williams, Gary; Winterbottom, Andrea; Zarowiecki, Magdalena; Finn, Robert D.; Flicek, Paul
IF13.1
PHI-base in 2022: a multi-species phenotype database for Pathogen-Host Interactions
NUCLEIC ACIDS RESEARCH
2021-11-12
85
OAAI
Urban, Martin; Cuzick, Alayne; Seager, James; Wood, Valerie; Rutherford, Kim; Venkatesh, Shilpa Yagwakote; Sahu, Jashobanta; Iyer, S. Vijaylakshmi; Khamari, Lokanath; De Silva, Nishadi; Martinez, Manuel Carbajo; Pedro, Helder; Yates, Andrew D.; Hammond-Kosack, Kim E.
IF13.1
PHI-base: the pathogen-host interactions database
NUCLEIC ACIDS RESEARCH
2019-11-16
269
OAAI
Urban, Martin; Cuzick, Alayne; Seager, James; Wood, Valerie; Rutherford, Kim; Venkatesh, Shilpa Yagwakote; De Silva, Nishadi; Martinez, Manuel Carbajo; Pedro, Helder; Yates, Andy D.; Hassani-Pak, Keywan; Hammond-Kosack, Kim E.
IF13.1
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species
NUCLEIC ACIDS RESEARCH
2019-11-08
151
OAAI
Shefchek, Kent A.; Harris, Nomi L.; Gargano, Michael; Matentzoglu, Nicolas; Unni, Deepak; Brush, Matthew; Keith, Daniel; Conlin, Tom; Vasilevsky, Nicole; Zhang, Xingmin Aaron; Balhoff, James P.; Babb, Larry; Bello, Susan M.; Blau, Hannah; Bradford, Yvonne; Carbon, Seth; Carmody, Leigh; Chan, Lauren E.; Cipriani, Valentina; Cuzick, Alayne; Della Rocca, Maria; Dunn, Nathan; Essaid, Shahim; Fey, Petra; Grove, Chris; Gourdine, Jean-Phillipe; Hamosh, Ada; Harris, Midori; Helbig, Ingo; Hoatlin, Maureen; Joachimiak, Marcin; Jupp, Simon; Lett, Kenneth B.; Lewis, Suzanna E.; McNamara, Craig; Pendlington, Zoe M.; Pilgrim, Clare; Putman, Tim; Ravanmehr, Vida; Reese, Justin; Riggs, Erin; Robb, Sofia; Roncaglia, Paola; Seager, James; Segerdell, Erik; Similuk, Morgan; Storm, Andrea L.; Thaxon, Courtney; Thessen, Anne; Jacobsen, Julius O. B.; McMurry, Julie A.; Groza, Tudor; Koehler, Sebastian; Smedley, Damian; Robinson, Peter N.; Mungall, Christopher J.; Haendel, Melissa A.; Munoz-Torres, Monica C.; Osumi-Sutherland, David
IF13.1
Towards automating underwater measurement of fish length: a comparison of semi-automatic and manual stereo-video measurements
2017-02-27
48
OAAI
Shafait, Faisal; Harvey, Euan S.; Shortis, Mark R.; Mian, Ajmal; Ravanbakhsh, Mehdi; Seager, James W.; Culverhouse, Philip F.; Cline, Danelle E.; Edgington, Duane R.
Current and future trends in marine image annotation software
2016-12-01
52
Gomes-Pereira, Jose Nuno; Auger, Vincent; Beisiegel, Kolja; Benjamin, Robert; Bergmann, Melanie; Bowden, David; Buhl-Mortensen, Pal; De Leo, Fabio C.; Dionisio, Gisela; Durden, Jennifer M.; Edwards, Luke; Friedman, Ariell; Greinert, Jens; Jacobsen-Stout, Nancy; Lerner, Steve; Leslie, Murray; Nattkemper, Tim W.; Sameoto, Jessica A.; Schoening, Timm; Schouten, Ronald; Seager, James; Singh, Hanumant; Soubigou, Olivier; Tojeira, Ines; van den Beld, Inge; Dias, Frederico; Tempera, Fernando; Santos, Ricardo S.
PREAI
Fish identification from videos captured in uncontrolled underwater environments
2016-07-18
43
OAAI
Shafait, Faisal; Mian, Ajmal; Shortis, Mark; Ghanem, Bernard; Culverhouse, Phil F.; Edgington, Duane; Cline, Danelle; Ravanbakhsh, Mehdi; Seager, James; Harvey, Euan S.
Research Directions
No research directions

