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Daniele Capocefalo

machine learning for integrative genomics group

10H-index
22Paper Count
353Citation Count
Published Papers 9
Publication Date
STORIES: learning cell fate landscapes from spatial transcriptomics using optimal transport
err2025-11-03
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errGeert-Jan Huizing; Jules Samaran; Daniele Capocefalo; Anna Audit; Gabriel Peyré; Laura Cantini
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Multiscale modeling uncovers 7q11.23 copy number variation-dependent changes in ribosomal biogenesis and neuronal maturation and excitability
err2024-07-15
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errMihailovich, Marija; Germain, Pierre-Luc; Shyti, Reinald; Pozzi, Davide; Noberini, Roberta; Liu, Yansheng; Aprile, Davide; Tenderini, Erika; Troglio, Flavia; Trattaro, Sebastiano; Fabris, Sonia; Ciptasari, Ummi; Rigoli, Marco Tullio; Caporale, Nicolo; D'Agostino, Giuseppe; Mirabella, Filippo; Vitriolo, Alessandro; Capocefalo, Daniele; Skaros, Adrianos; Franchini, Agnese Virginia; Ricciardi, Sara; Biunno, Ida; Neri, Antonino; Kasri, Nael Nadif; Bonaldi, Tiziana; Aebersold, Rudolf; Matteoli, Michela; Testa, Giuseppe
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Curation of causal interactions mediated by genes associated with autism accelerates the understanding of gene-phenotype relationships underlying neurodevelopmental disorders (vol 29, pg 186, 2024)
err2024-01-24
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errIannuccelli, Marta; Vitriolo, Alessandro; Licata, Luana; Lo Surdo, Prisca; Contino, Silvia; Cheroni, Cristina; Capocefalo, Daniele; Castagnoli, Luisa; Testa, Giuseppe; Cesareni, Gianni; Perfetto, Livia
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Curation of causal interactions mediated by genes associated with autism accelerates the understanding of gene-phenotype relationships underlying neurodevelopmental disorders
err2023-12-15
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errIannuccelli, Marta; Vitriolo, Alessandro; Licata, Luana; Lo Surdo, Prisca; Contino, Silvia; Cheroni, Cristina; Capocefalo, Daniele; Castagnoli, Luisa; Testa, Giuseppe; Cesareni, Gianni; Perfetto, Livia
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Pyntacle: a parallel computing-enabled framework for large-scale network biology analysis
err2020-10-21
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errParca, Luca; Truglio, Mauro; Biagini, Tommaso; Castellana, Stefano; Petrizzelli, Francesco; Capocefalo, Daniele; Jordan, Ferenc; Carella, Massimo; Mazza, Tommaso
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Systematic Analysis of Mouse Genome Reveals Distinct Evolutionary and Functional Properties Among Circadian and Ultradian Genes
err2018-08-23
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errCastellana, Stefano; Mazza, Tommaso; Capocefalo, Daniele; Genov, Nikolai; Biagini, Tommaso; Fusilli, Caterina; Scholkmann, Felix; Relogio, Angela; Hogenesch, John B.; Mazzoccoli, Gianluigi
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Insights From Molecular Characterization of Adult Patients of Families With Multigenerational Diabetes
err2017-10-09
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errPezzilli, Serena; Ludovico, Ornella; Biagini, Tommaso; Mercuri, Luana; Alberico, Federica; Lauricella, Eleonora; Dallali, Hamza; Capocefalo, Daniele; Carella, Massimo; Miccinilli, Elide; Piscitelli, Pamela; Scarale, Maria Giovanna; Mazza, Tommaso; Trischitta, Vincenzo; Prudente, Sabrina
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Molecular dynamics recipes for genome research
err2017-02-18
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errBiagini, Tommaso; Chillemi, Giovanni; Mazzoccoli, Gianluigi; Grottesi, Alessandro; Fusilli, Caterina; Capocefalo, Daniele; Castellana, Stefano; Vescovi, Angelo Luigi; Mazza, Tommaso
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Multifaceted enrichment analysis of RNA-RNA crosstalk reveals cooperating micro-societies in human colorectal cancer
err2016-04-11
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errMazza, Tommaso; Mazzoccoli, Gianluigi; Fusilli, Caterina; Capocefalo, Daniele; Panza, Anna; Biagini, Tommaso; Castellana, Stefano; Gentile, Annamaria; De Cata, Angelo; Palumbo, Orazio; Stallone, Raffaella; Rubino, Rosa; Carella, Massimo; Piepoli, Ada
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