Not logged inCandidate genes involved in biosynthesis and degradation of the main extracellular matrix polysaccharides of brown algae and their probable evolutionary history
Mazeas, Lisa; Bouguerba-Collin, Ahlem; Cock, J. Mark; Denoeud, France; Godfroy, Olivier; Brillet-Gueguen, Loraine; Barbeyron, Tristan; Lipinska, Agnieszka P.; Delage, Ludovic; Corre, Erwan; Drula, Elodie; Henrissat, Bernard; Czjzek, Mirjam; Terrapon, Nicolas; Herve, Cecile .png)
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SaveLocoGSE, a sequence-based genome size estimator for plants (vol 15, 1328966, 2024)Guenzi-Tiberi, Pierre; Istace, Benjamin; Alsos, Inger Greve; Coissac, Eric; Lavergne, Sebastien; Aury, Jean-Marc; Denoeud, France Share Save Share Save Pervasive tandem duplications and convergent evolution shape coral genomesNoel, Benjamin; Denoeud, France; Rouan, Alice; Buitrago-Lopez, Carol; Capasso, Laura; Poulain, Julie; Boissin, Emilie; Pousse, Melanie; Da Silva, Corinne; Couloux, Arnaud; Armstrong, Eric; Carradec, Quentin; Cruaud, Corinne; Labadie, Karine; Le-Hoang, Julie; Tambutte, Sylvie; Barbe, Valerie; Moulin, Clementine; Bourdin, Guillaume; Iwankow, Guillaume; Romac, Sarah; Agostini, Sylvain; Banaigs, Bernard; Boss, Emmanuel; Bowler, Chris; de Vargas, Colomban; Douville, Eric; Flores, J. Michel; Forcioli, Didier; Furla, Paola; Galand, Pierre E.; Lombard, Fabien; Pesant, Stephane; Reynaud, Stephanie; Sullivan, Matthew B.; Sunagawa, Shinichi; Thomas, Olivier P.; Trouble, Romain; Thurber, Rebecca Vega; Allemand, Denis; Planes, Serge; Gilson, Eric; Zoccola, Didier; Wincker, Patrick; Voolstra, Christian R.; Aury, Jean-Marc Share Save Postglacial species arrival and diversity buildup of northern ecosystems took millenniaAlsos, Inger Greve; Rijal, Dilli Prasad; Ehrich, Dorothee; Karger, Dirk Nikolaus; Yoccoz, Nigel Gilles; Heintzman, Peter D.; Brown, Antony G.; Lammers, Youri; Pellissier, Loic; Alm, Torbjorn; Brathen, Kari Anne; Coissac, Eric; Merkel, Marie Kristine Foreid; Alberti, Adriana; Denoeud, France; Bakke, Jostein Share Save Tempo and drivers of plant diversification in the European mountain systemSmycka, Jan; Roquet, Cristina; Boleda, Marti; Alberti, Adriana; Boyer, Frederic; Douzet, Rolland; Perrier, Christophe; Rome, Maxime; Valay, Jean-Gabriel; Denoeud, France; Semberova, Kristyna; Zimmermann, Niklaus E.; Thuiller, Wilfried; Wincker, Patrick; Alsos, Inger G.; Coissac, Eric; Layergne, Sebastien Share Save Share Save Long-read assembly of the Brassica napus reference genome Darmor-bzhRousseau-Gueutin, Mathieu; Belser, Caroline; Da Silva, Corinne; Richard, Gautier; Istace, Benjamin; Cruaud, Corinne; Falentin, Cyril; Boideau, Franz; Boutte, Julien; Delourme, Regine; Deniot, Gwenaelle; Engelen, Stefan; de Carvalho, Julie Ferreira; Lemainque, Arnaud; Maillet, Loeiz; Morice, Jerome; Wincker, Patrick; Denoeud, France; Chevre, Anne-Marie; Aury, Jean-Marc Share Save The Treasure Vault Can be Opened: Large-Scale Genome Skimming Works Well Using Herbarium and Silica Gel Dried MaterialAlsos, Inger Greve; Lavergne, Sebastien; Merkel, Marie Kristine Foreid; Boleda, Marti; Lammers, Youri; Alberti, Adriana; Pouchon, Charles; Denoeud, France; Pitelkova, Iva; Puscas, Mihai; Roquet, Cristina; Hurdu, Bogdan-Iuliu; Thuiller, Wilfried; Zimmermann, Niklaus E.; Hollingsworth, Peter M.; Coissac, Eric Share Save Cytonuclear interactions remain stable during allopolyploid evolution despite repeated whole-genome duplications in Brassicade Carvalho, Julie Ferreira; Lucas, Jeremy; Deniot, Gwenaelle; Falentin, Cyril; Filangi, Olivier; Gilet, Marie; Legeai, Fabrice; Lode, Maryse; Morice, Jerome; Trotoux, Gwenn; Aury, Jean-Marc; Barbe, Valerie; Keller, Jean; Snowdon, Rod; He, Zhesi; Denoeud, France; Wincker, Patrick; Bancroft, Ian; Chevre, Anne-Marie; Rousseau-Gueutin, Mathieu Share Save Chromosome-scale assemblies of plant genomes using nanopore long reads and optical mapsBelser, Caroline; Istace, Benjamin; Denis, Erwan; Dubarry, Marion; Baurens, Franc-Christophe; Falentin, Cyril; Genete, Mathieu; Berrabah, Wahiba; Chevre, Anne-Marie; Delourme, Regine; Deniot, Gwenaelle; Denoeud, France; Duffe, Philippe; Engelen, Stefan; Lemainque, Arnaud; Manzanares-Dauleux, Maria; Martin, Guillaume; Morice, Jerome; Noel, Benjamin; Vekemans, Xavier; D'Hont, Angelique; Rousseau-Gueutin, Mathieu; Barbe, Valerie; Cruaud, Corinne; Wincker, Patrick; Aury, Jean-Marc Share Save Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleraceaParkin, Isobel A. P.; Koh, Chushin; Tang, Haibao; Robinson, Stephen J.; Kagale, Sateesh; Clarke, Wayne E.; Town, Chris D.; Nixon, John; Krishnakumar, Vivek; Bidwell, Shelby L.; Denoeud, France; Belcram, Harry; Links, Matthew G.; Just, Jeremy; Clarke, Carling; Bender, Tricia; Huebert, Terry; Mason, Annaliese S.; Pires, J. Chris; Barker, Guy; Moore, Jonathan; Walley, Peter G.; Manoli, Sahana; Batley, Jacqueline; Edwards, David; Nelson, Matthew N.; Wang, Xiyin; Paterson, Andrew H.; King, Graham; Bancroft, Ian; Chalhoub, Boulos; Sharpe, Andrew G. Share Save The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomesLiu, Shengyi; Liu, Yumei; Yang, Xinhua; Tong, Chaobo; Edwards, David; Parkin, Isobel A. P.; Zhao, Meixia; Ma, Jianxin; Yu, Jingyin; Huang, Shunmou; Wang, Xiyin; Wang, Junyi; Lu, Kun; Fang, Zhiyuan; Bancroft, Ian; Yang, Tae-Jin; Hu, Qiong; Wang, Xinfa; Yue, Zhen; Li, Haojie; Yang, Linfeng; Wu, Jian; Zhou, Qing; Wang, Wanxin; King, Graham J.; Pires, J. Chris; Lu, Changxin; Wu, Zhangyan; Sampath, Perumal; Wang, Zhuo; Guo, Hui; Pan, Shengkai; Yang, Limei; Min, Jiumeng; Zhang, Dong; Jin, Dianchuan; Li, Wanshun; Belcram, Harry; Tu, Jinxing; Guan, Mei; Qi, Cunkou; Du, Dezhi; Li, Jiana; Jiang, Liangcai; Batley, Jacqueline; Sharpe, Andrew G.; Park, Beom-Seok; Ruperao, Pradeep; Cheng, Feng; Waminal, Nomar Espinosa; Huang, Yin; Dong, Caihua; Wang, Li; Li, Jingping; Hu, Zhiyong; Zhuang, Mu; Huang, Yi; Huang, Junyan; Shi, Jiaqin; Mei, Desheng; Liu, Jing; Lee, Tae-Ho; Wang, Jinpeng; Jin, Huizhe; Li, Zaiyun; Li, Xun; Zhang, Jiefu; Xiao, Lu; Zhou, Yongming; Liu, Zhongsong; Liu, Xuequn; Qin, Rui; Tang, Xu; Liu, Wenbin; Wang, Yupeng; Zhang, Yangyong; Lee, Jonghoon; Kim, Hyun Hee; Denoeud, France; Xu, Xun; Liang, Xinming; Hua, Wei; Wang, Xiaowu; Wang, Jun; Chalhoub, Boulos; Paterson, Andrew H. Share Save The Streamlined Genome of Phytomonas spp. Relative to Human Pathogenic Kinetoplastids Reveals a Parasite Tailored for PlantsPorcel, Betina M.; Denoeud, France; Opperdoes, Fred; Noel, Benjamin; Madoui, Mohammed-Amine; Hammarton, Tansy C.; Field, Mark C.; Da Silva, Corinne; Couloux, Arnaud; Poulain, Julie; Katinka, Michael; Jabbari, Kamel; Aury, Jean-Marc; Campbell, David A.; Cintron, Roxana; Dickens, Nicholas J.; Docampo, Roberto; Sturm, Nancy R.; Koumandou, V. Lila; Fabre, Sandrine; Flegontov, Pavel; Lukes, Julius; Michaeli, Shulamit; Mottram, Jeremy C.; Szoeor, Balazs; Zilberstein, Dan; Bringaud, Frederic; Wincker, Patrick; Dollet, Michel Share Save Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the ArchaeplastidaCollen, Jonas; Porcel, Betina; Carre, Wilfrid; Ball, Steven G.; Chaparro, Cristian; Tonon, Thierry; Barbeyron, Tristan; Michel, Gurvan; Noel, Benjamin; Valentin, Klaus; Elias, Marek; Artiguenave, Franois; Arun, Alok; Aury, Jean-Marc; Barbosa-Neto, Jose F.; Bothwell, John H.; Bouget, Franois-Yves; Brillet, Loraine; Cabello-Hurtado, Francisco; Capella-Gutierrez, Salvador; Charrier, Benedicte; Cladiere, Lionel; Cock, J. Mark; Coelho, Susana M.; Colleoni, Christophe; Czjzek, Mirjam; Da Silva, Corinne; Delage, Ludovic; Denoeud, France; Deschamps, Philippe; Dittami, Simon M.; Gabaldon, Toni; Gachon, Claire M. M.; Groisillier, Agnes; Herve, Cecile; Jabbari, Kamel; Katinka, Michael; Kloareg, Bernard; Kowalczyk, Nathalie; Labadie, Karine; Leblanc, Catherine; Lopez, Pascal J.; McLachlan, Deirdre H.; Meslet-Cladiere, Laurence; Moustafa, Ahmed; Nehr, Zofia; Collen, Pi Nyvall; Panaud, Olivier; Partensky, Frederic; Poulain, Julie; Rensing, Stefan A.; Rousvoal, Sylvie; Samson, Gaelle; Symeonidi, Aikaterini; Weissenbach, Jean; Zambounis, Antonios; Wincker, Patrick; Boyen, Catherine Share Save Conservation and divergence of chemical defense system in the tunicate Oikopleura dioica revealed by genome wide response to two xenobioticsYadetie, Fekadu; Butcher, Stephen; Forde, Hilde E.; Campsteijn, Coen; Bouquet, Jean-Marie; Karlsen, Odd A.; Denoeud, France; Metpally, Raghu; Thompson, Eric M.; Manak, J. Robert; Goksoyr, Anders; Chourrout, Daniel Share Save Genome sequence of the stramenopile Blastocystis, a human anaerobic parasiteDenoeud, France; Roussel, Michael; Noel, Benjamin; Wawrzyniak, Ivan; Da Silva, Corinne; Diogon, Marie; Viscogliosi, Eric; Brochier-Armanet, Celine; Couloux, Arnaud; Poulain, Julie; Segurens, Beatrice; Anthouard, Veronique; Texier, Catherine; Blot, Nicolas; Poirier, Philippe; Ng, Geok Choo; Tan, Kevin S. W.; Artiguenave, Francois; Jaillon, Olivier; Aury, Jean-Marc; Delbac, Frederic; Wincker, Patrick; Vivares, Christian P.; El Alaoui, Hicham Share Save Variation in Novel Exons (RACEfrags) of the MECP2 Gene in Rett Syndrome Patients and ControlsMakrythanasis, Periklis; Kapranov, Philipp; Bartoloni, Lucia; Reymond, Alexandre; Deutsch, Samuel; Guigo, Roderic; Denoeud, France; Drenkow, Jorg; Rossier, Colette; Ariani, Francesca; Capra, Valeria; Excoffier, Laurent; Renieri, Alessandra; Gingeras, Thomas R.; Antonarakis, Stylianos E. Share Save Annotating genomes with massive-scale RNA sequencingDenoeud, France; Aury, Jean-Marc; Da Silva, Corinne; Noel, Benjamin; Rogier, Odile; Delledonne, Massimo; Morgante, Michele; Valle, Giorgio; Wincker, Patrick; Scarpelli, Claude; Jaillon, Olivier; Artiguenave, Francois Share Save Efficient targeted transcript discovery via array-based normalization of RACE librariesDjebali, Sarah; Kapranov, Philipp; Foissac, Sylvain; Lagarde, Julien; Reymond, Alexandre; Ucla, Catherine; Wyss, Carine; Drenkow, Jorg; Dumais, Erica; Murray, Ryan R.; Lin, Chenwei; Szeto, David; Denoeud, France; Calvo, Miquel; Frankish, Adam; Harrow, Jennifer; Makrythanasis, Periklis; Vidal, Marc; Salehi-Ashtiani, Kourosh; Antonarakis, Stylianos E.; Gingeras, Thomas R.; Guigo, Roderic Share Save 
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