arrow
Back
E

Emmanuel Barillot

PSL University

76H-index
449Paper Count
2.3WCitation Count
Published Papers 101
Publication Date
sCellST predicts single-cell gene expression from H& E images
err2026-01-09
err0
errOAAI
errLoïc Chadoutaud; Marvin Lerousseau; Daniel Herrero-Saboya; Julian Ostermaier; Jacqueline Fontugne; Emmanuel Barillot; Thomas Walter
errShare
errSave
Author Correction: Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms
err2025-07-12
err0
errOAAI
errAlexander Mazein; Marek Ostaszewski; Inna Kuperstein; Steven Watterson; Nicolas Le Novère; Diane Lefaudeux; Bertrand De Meulder; Johann Pellet; Irina Balaur; Mansoor Saqi; Maria Manuela Nogueira; Feng Q. HeFeng; Andrew Parton; Nathanaël Lemonnier; Piotr Gawron; Stephan Gebel; Pierre Hainaut; Markus Ollert; Ugur Dogrusoz; Emmanuel Barillot; Andrei Zinovyev; Reinhard Schneider; Rudi Balling; Charles Auffray
errShare
errSave
Cell-type deconvolution methods for spatial transcriptomics
err2025-05-14
err0
PREAI
errLucie C. Gaspard-Boulinc; Luca Gortana; Thomas Walter; Emmanuel Barillot; Florence M. G. Cavalli
errShare
errSave
Building multiscale models with PhysiBoSS, an agent-based modeling tool
err2024-10-18
err0
errOAAI
errRuscone, Marco; Checcoli, Andrea; Heiland, Randy; Barillot, Emmanuel; Macklin, Paul; Calzone, Laurence; Noel, Vincent
errShare
errSave
Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches
err2024-02-13
err1
errOAAI
errNiarakis, Anna; Ostaszewski, Marek; Mazein, Alexander; Kuperstein, Inna; Kutmon, Martina; Gillespie, Marc E.; Funahashi, Akira; Acencio, Marcio Luis; Hemedan, Ahmed; Aichem, Michael; Klein, Karsten; Czauderna, Tobias; Burtscher, Felicia; Yamada, Takahiro G.; Hiki, Yusuke; Hiroi, Noriko F.; Hu, Finterly; Pham, Nhung; Ehrhart, Friederike; Willighagen, Egon L.; Valdeolivas, Alberto; Dugourd, Aurelien; Messina, Francesco; Esteban-Medina, Marina; Pena-Chilet, Maria; Rian, Kinza; Soliman, Sylvain; Aghamiri, Sara Sadat; Puniya, Bhanwar Lal; Naldi, Aurelien; Helikar, Tomas; Singh, Vidisha; Fernandez, Marco Farinas; Bermudez, Viviam; Tsirvouli, Eirini; Montagud, Arnau; Noel, Vincent; Ponce-de-Leon, Miguel; Maier, Dieter; Bauch, Angela; Gyori, Benjamin M.; Bachman, John A.; Luna, Augustin; Pinero, Janet; Furlong, Laura I.; Balaur, Irina; Rougny, Adrien; Jarosz, Yohan; Overall, Rupert W.; Phair, Robert; Perfetto, Livia; Matthews, Lisa; Rex, Devasahayam Arokia Balaya; Orlic-Milacic, Marija; Gomez, Luis Cristobal Monraz; De Meulder, Bertrand; Ravel, Jean Marie; Jassal, Bijay; Satagopam, Venkata; Wu, Guanming; Golebiewski, Martin; Gawron, Piotr; Calzone, Laurence; Beckmann, Jacques S.; Evelo, Chris T.; D'Eustachio, Peter; Schreiber, Falk; Saez-Rodriguez, Julio; Dopazo, Joaquin; Kuiper, Martin; Valencia, Alfonso; Wolkenhauer, Olaf; Kitano, Hiroaki; Barillot, Emmanuel; Auffray, Charles; Balling, Rudi; Schneider, Reinhard
errShare
errSave
PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
err2023-10-30
err16
errOAAI
errPonce-de-Leon, Miguel; Montagud, Arnau; Noel, Vincent; Meert, Annika; Pradas, Gerard; Barillot, Emmanuel; Calzone, Laurence; Valencia, Alfonso
errShare
errSave
Genome-wide redistribution of meiotic double-strand breaks in Saccharomyces cerevisiae
err2023-03-27
err91
errOAAI
errRobine, Nicolas; Uematsu, Norio; Amiot, Franck; Gidrol, Xavier; Barillot, Emmanuel; Nicolas, Alain; Borde, Valerie
errShare
errSave
A comparison of Sars-Cov-2 vaccine platforms: the CoviCompare project
err2022-05-05
err9
errOAAI
errMolino, Diana; Durier, Christine; Radenne, Anne; Desaint, Corinne; Ropers, Jacques; Courcier, Soizic; Vieillard, Louis Victorien; Rekacewicz, Claire; Parfait, Beatrice; Appay, Victor; Batteux, Frederic; Barillot, Emmanuel; Cogne, Michel; Combadiere, Behazine; Eberhardt, Christiane S.; Gorochov, Guy; Hupe, Philippe; Ninove, Laetitia; Paul, Stephane; Pellegrin, Isabelle; van der Werf, Sylvie; Lefebvre, Maeva; Botelho-Nevers, Elisabeth; Ortega-Perez, Inmaculada; Jaspard, Marie; Sow, Samba; Lelievre, Jean Daniel; de Lamballerie, Xavier; Kieny, Marie Paule; Tartour, Eric; Launay, Odile
errShare
errSave
UPMaBoSS: A Novel Framework for Dynamic Cell Population Modeling
err2022-03-02
err5
errOAAI
errStoll, Gautier; Naldi, Aurelien; Noel, Vincent; Viara, Eric; Barillot, Emmanuel; Kroemer, Guido; Thieffry, Denis; Calzone, Laurence
errShare
errSave
Patient-specific Boolean models of signalling networks guide personalised treatments
err2022-02-15
err38
errOAAI
errMontagud, Arnau; Beal, Jonas; Tobalina, Luis; Traynard, Pauline; Subramanian, Vigneshwari; Szalai, Bence; Alfoldi, Robert; Puskas, Laszlo; Valencia, Alfonso; Barillot, Emmanuel; Saez-Rodriguez, Julio; Calzone, Laurence
errShare
errSave
Modeling Progression of Single Cell Populations Through the Cell Cycle as a Sequence of Switches
err2022-02-01
err3
errOAAI
errZinovyev, Andrei; Sadovsky, Michail; Calzone, Laurence; Fouche, Aziz; Groeneveld, Clarice S.; Chervov, Alexander; Barillot, Emmanuel; Gorban, Alexander N.
errShare
errSave
COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms (vol 17, e10387, 2021)
err2021-12-23
err49
errOAAI
errOstaszewski, Marek; Niarakis, Anna; Mazein, Alexander; Kuperstein, Inna; Phair, Robert; Orta-Resendiz, Aurelio; Singh, Vidisha; Aghamiri, Sara Sadat; Acencio, Marcio Luis; Glaab, Enrico; Ruepp, Andreas; Fobo, Gisela; Montrone, Corinna; Brauner, Barbara; Frishman, Goar; Monraz Gomez, Luis Cristobal; Somers, Julia; Hoch, Matti; Kumar Gupta, Shailendra; Scheel, Julia; Borlinghaus, Hanna; Czauderna, Tobias; Schreiber, Falk; Montagud, Arnau; Ponce de Leon, Miguel; Funahashi, Akira; Hiki, Yusuke; Hiroi, Noriko; Yamada, Takahiro G.; Drager, Andreas; Renz, Alina; Naveez, Muhammad; Bocskei, Zsolt; Messina, Francesco; Bornigen, Daniela; Fergusson, Liam; Conti, Marta; Rameil, Marius; Nakonecnij, Vanessa; Vanhoefer, Jakob; Schmiester, Leonard; Wang, Muying; Ackerman, Emily E.; Shoemaker, Jason E.; Zucker, Jeremy; Oxford, Kristie; Teuton, Jeremy; Kocakaya, Ebru; Summak, Gokce Yagmur; Hanspers, Kristina; Kutmon, Martina; Coort, Susan; Eijssen, Lars; Ehrhart, Friederike; Rex, D. A. B.; Slenter, Denise; Martens, Marvin; Pham, Nhung; Haw, Robin; Jassal, Bijay; Matthews, Lisa; Orlic-Milacic, Marija; Senff-Ribeiro, Andrea; Rothfels, Karen; Shamovsky, Veronica; Stephan, Ralf; Sevilla, Cristoffer; Varusai, Thawfeek; Ravel, Jean-Marie; Fraser, Rupsha; Ortseifen, Vera; Marchesi, Silvia; Gawron, Piotr; Smula, Ewa; Heirendt, Laurent; Satagopam, Venkata; Wu, Guanming; Riutta, Anders; Golebiewski, Martin; Owen, Stuart; Goble, Carole; Hu, Xiaoming; Overall, Rupert W.; Maier, Dieter; Bauch, Angela; Gyori, Benjamin M.; Bachman, John A.; Vega, Carlos; Groues, Valentin; Vazquez, Miguel; Porras, Pablo; Licata, Luana; Iannuccelli, Marta; Sacco, Francesca; Nesterova, Anastasia; Yuryev, Anton; de Waard, Anita; Turei, Denes; Luna, Augustin; Babur, Ozgun; Soliman, Sylvain; Valdeolivas, Alberto; Esteban-Medina, Marina; Pena-Chilet, Maria; Rian, Kinza; Helikar, Tomas; Puniya, Bhanwar Lal; Modos, Dezso; Treveil, Agatha; Olbei, Marton; De Meulder, Bertrand; Ballereau, Stephane; Dugourd, Aurelien; Naldi, Aurelien; Noel, Vincent; Calzone, Laurence; Sander, Chris; Demir, Emek; Korcsmaros, Tamas; Freeman, Tom C.; Auge, Franck; Beckmann, Jacques S.; Hasenauer, Jan; Wolkenhauer, Olaf; Willighagen, Egon L.; Pico, Alexander R.; Evelo, Chris T.; Gillespie, Marc E.; Stein, Lincoln D.; Hermjakob, Henning; D'Eustachio, Peter; Saez-Rodriguez, Julio; Dopazo, Joaquin; Valencia, Alfonso; Kitano, Hiroaki; Barillot, Emmanuel; Auffray, Charles; Balling, Rudi; Schneider, Reinhard
errShare
errSave
WebMaBoSS: A Web Interface for Simulating Boolean Models Stochastically
err2021-11-15
err2
errOAAI
errNoel, Vincent; Ruscone, Marco; Stoll, Gautier; Viara, Eric; Zinovyev, Andrei; Barillot, Emmanuel; Calzone, Laurence
errShare
errSave
COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms
err2021-10-19
err49
errOAAI
errOstaszewski, Marek; Niarakis, Anna; Mazein, Alexander; Kuperstein, Inna; Phair, Robert; Orta-Resendiz, Aurelio; Singh, Vidisha; Aghamiri, Sara Sadat; Acencio, Marcio Luis; Glaab, Enrico; Ruepp, Andreas; Fobo, Gisela; Montrone, Corinna; Brauner, Barbara; Frishman, Goar; Gomez, Luis Cristobal Monraz; Somers, Julia; Hoch, Matti; Gupta, Shailendra Kumar; Scheel, Julia; Borlinghaus, Hanna; Czauderna, Tobias; Schreiber, Falk; Montagud, Arnau; de Leon, Miguel Ponce; Funahashi, Akira; Hiki, Yusuke; Hiroi, Noriko; Yamada, Takahiro G.; Draeger, Andreas; Renz, Alina; Naveez, Muhammad; Bocskei, Zsolt; Messina, Francesco; Boernigen, Daniela; Fergusson, Liam; Conti, Marta; Rameil, Marius; Nakonecnij, Vanessa; Vanhoefer, Jakob; Schmiester, Leonard; Wang, Muying; Ackerman, Emily E.; Shoemaker, Jason E.; Zucker, Jeremy; Oxford, Kristie; Teuton, Jeremy; Kocakaya, Ebru; Summak, Gokce Yagmur; Hanspers, Kristina; Kutmon, Martina; Coort, Susan; Eijssen, Lars; Ehrhart, Friederike; Rex, Devasahayam Arokia Balaya; Slenter, Denise; Martens, Marvin; Nhung Pham; Haw, Robin; Jassal, Bijay; Matthews, Lisa; Orlic-Milacic, Marija; Ribeiro, Andrea Senff; Rothfels, Karen; Shamovsky, Veronica; Stephan, Ralf; Sevilla, Cristoffer; Varusai, Thawfeek; Ravel, Jean-Marie; Fraser, Rupsha; Ortseifen, Vera; Marchesi, Silvia; Gawron, Piotr; Smula, Ewa; Heirendt, Laurent; Satagopam, Venkata; Wu, Guanming; Riutta, Anders; Golebiewski, Martin; Owen, Stuart; Goble, Carole; Hu, Xiaoming; Overall, Rupert W.; Maier, Dieter; Bauch, Angela; Gyori, Benjamin M.; Bachman, John A.; Vega, Carlos; Groues, Valentin; Vazquez, Miguel; Porras, Pablo; Licata, Luana; Iannuccelli, Marta; Sacco, Francesca; Nesterova, Anastasia; Yuryev, Anton; de Waard, Anita; Turei, Denes; Luna, Augustin; Babur, Ozgun; Soliman, Sylvain; Valdeolivas, Alberto; Esteban-Medina, Marina; Pena-Chilet, Maria; Rian, Kinza; Helikar, Tomas; Puniya, Bhanwar Lal; Modos, Dezso; Treveil, Agatha; Olbei, Marton; De Meulder, Bertrand; Ballereau, Stephane; Dugourd, Aurelien; Naldi, Aurelien; Noel, Vincent; Calzone, Laurence; Sander, Chris; Demir, Emek; Korcsmaros, Tamas; Freeman, Tom C.; Auge, Franck; Beckmann, Jacques S.; Hasenauer, Jan; Wolkenhauer, Olaf; Wilighagen, Egon L.; Pico, Alexander R.; Evelo, Chris T.; Gillespie, Marc E.; Stein, Lincoln D.; Hermjakob, Henning; D'Eustachio, Peter; Saez-Rodriguez, Julio; Dopazo, Joaquin; Valencia, Alfonso; Kitano, Hiroaki; Barillot, Emmanuel; Auffray, Charles; Balling, Rudi; Schneider, Reinhard
errShare
errSave
A high-risk retinoblastoma subtype with stemness features, dedifferentiated cone states and neuronal/ganglion cell gene expression
err2021-09-22
err58
errOAAI
errLiu, Jing; Ottaviani, Daniela; Sefta, Meriem; Desbrousses, Celine; Chapeaublanc, Elodie; Aschero, Rosario; Sirab, Nanor; Lubieniecki, Fabiana; Lamas, Gabriela; Tonon, Laurie; Dehainault, Catherine; Hua, Clement; Freneaux, Paul; Reichman, Sacha; Karboul, Narjesse; Biton, Anne; Mirabal-Ortega, Liliana; Larcher, Magalie; Brulard, Celine; Arrufat, Sandrine; Nicolas, Andre; Elarouci, Nabila; Popova, Tatiana; Nemati, Fariba; Decaudin, Didier; Gentien, David; Baulande, Sylvain; Mariani, Odette; Dufour, Florent; Guibert, Sylvain; Vallot, Celine; Lumbroso-Le Rouic, Livia; Matet, Alexandre; Desjardins, Laurence; Pascual-Pasto, Guillem; Sunol, Mariona; Catala-Mora, Jaume; Llano, Genoveva Correa; Couturier, Jerome; Barillot, Emmanuel; Schaiquevich, Paula; Gauthier-Villars, Marion; Stoppa-Lyonnet, Dominique; Golmard, Lisa; Houdayer, Claude; Brisse, Herve; Bernard-Pierrot, Isabelle; Letouze, Eric; Viari, Alain; Saule, Simon; Sastre-Garau, Xavier; Doz, Francois; Carcaboso, Angel M.; Cassoux, Nathalie; Pouponnot, Celio; Goureau, Olivier; Chantada, Guillermo; de Reynies, Aurelien; Aerts, Isabelle; Radvanyi, Francois
errShare
errSave
Gene- and pathway-level analyses of iCOGS variants highlight novel signaling pathways underlying familial breast cancer susceptibility
err2021-01-09
err4
errOAAI
errLonjou, Christine; Eon-Marchais, Severine; Truong, Therese; Dondon, Marie-Gabrielle; Karimi, Mojgan; Jiao, Yue; Damiola, Francesca; Barjhoux, Laure; Le Gal, Dorothee; Beauvallet, Juana; Mebirouk, Noura; Cavaciuti, Eve; Chiesa, Jean; Floquet, Anne; Audebert-Bellanger, Severine; Giraud, Sophie; Frebourg, Thierry; Limacher, Jean-Marc; Gladieff, Laurence; Mortemousque, Isabelle; Dreyfus, Helene; Lejeune-Dumoulin, Sophie; Lasset, Christine; Venat-Bouvet, Laurence; Bignon, Yves-Jean; Pujol, Pascal; Maugard, Christine M.; Luporsi, Elisabeth; Bonadona, Valerie; Nogues, Catherine; Berthet, Pascaline; Delnatte, Capucine; Gesta, Paul; Lortholary, Alain; Faivre, Laurence; Buecher, Bruno; Caron, Olivier; Gauthier-Villars, Marion; Coupier, Isabelle; Mazoyer, Sylvie; Monraz, Luis-Cristobal; Kondratova, Maria; Kuperstein, Inna; Guenel, Pascal; Barillot, Emmanuel; Stoppa-Lyonnet, Dominique; Andrieu, Nadine; Lesueur, Fabienne
errShare
errSave
Dynamical Boolean Modeling of Immunogenic Cell Death
err2020-11-12
err14
errOAAI
errCheccoli, Andrea; Pol, Jonathan G.; Naldi, Aurelien; Noel, Vincent; Barillot, Emmanuel; Kroemer, Guido; Thieffry, Denis; Calzone, Laurence; Stoll, Gautier
errShare
errSave
Transcriptional Programs Define Intratumoral Heterogeneity of Ewing Sarcoma at Single-Cell Resolution
err2020-02-01
err102
errOAAI
errAynaud, Marie-Ming; Mirabeau, Olivier; Gruel, Nadege; Grossetete, Sandrine; Boeva, Valentina; Durand, Simon; Surdez, Didier; Saulnier, Olivier; Zaidi, Sakina; Gribkova, Svetlana; Fouche, Aziz; Kairov, Ulykbek; Raynal, Virginie; Tirode, Franck; Gruenewald, Thomas G. P.; Bohec, Mylene; Baulande, Sylvain; Janoueix-Lerosey, Isabelle; Vert, Jean-Philippe; Barillot, Emmanuel; Delattre, Olivier; Zinovyev, Andrei
errShare
errSave
Interpreting pathways to discover cancer driver genes with Moonlight
err2020-01-03
err67
errOAAI
errColaprico, Antonio; Olsen, Catharina; Bailey, Matthew H.; Odom, Gabriel J.; Terkelsen, Thilde; Silva, Tiago C.; Olsen, Andre, V; Cantini, Laura; Zinovyev, Andrei; Barillot, Emmanuel; Noushmehr, Houtan; Bertoli, Gloria; Castiglioni, Isabella; Cava, Claudia; Bontempi, Gianluca; Chen, Xi Steven; Papaleo, Elena
errShare
errSave
A multiscale signalling network map of innate immune response in cancer reveals cell heterogeneity signatures
err2019-10-22
err38
errOAAI
errKondratova, Maria; Czerwinska, Urszula; Sompairac, Nicolas; Amigorena, Sebastian D.; Soumelis, Vassili; Barillot, Emmanuel; Zinovyev, Andrei; Kuperstein, Inna
errShare
errSave