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John Parkinson

hospital for sick children

62H-index
305Paper Count
1.8WCitation Count
Published Papers 82
Publication Date
Cell4D: a general purpose spatial stochastic simulator for cellular pathways
err2026-04-08
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errOAAI
errDonny Chan; Graham L. Cromar; Billy Taj; John Parkinson
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Whole Genome Sequence of the gut commensal protist Tritrichomonas musculus isolated from laboratory mice
err2025-04-08
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errAlves-Ferreira, Eliza V. C.; Galac, Madeline R.; Lorenzi, Hernan A.; Ho, Margaret C. W.; Tjhin, Erick T.; Popovic, Ana; Parkinson, John
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Cross-kingdom-mediated detection of intestinal protozoa through NLRP6
err2025-03-01
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PREAI
errWinsor, Nathaniel J.; Bayer, Giuliano; Singh, Ojas; Chan, Jeremy K.; Li, Lu Yi; Lieng, Brandon Y.; Foerster, Elisabeth; Popovic, Ana; Tsankov, Boyan K.; Maughan, Heather; Lemire, Paul; Tam, Elaine; Streutker, Catherine; Chen, Lina; Heaver, Stacey L.; Ley, Ruth E.; Parkinson, John; Montenegro-Burke, J. Rafael; Birchenough, George M. H.; Philpott, Dana J.; Girardin, Stephen E.
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The protozoan commensal Tritrichomonas musculis is a natural adjuvant for mucosal IgA
err2024-11-13
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errCao, Eric Yixiao; Burrows, Kyle; Chiaranunt, Pailin; Popovic, Ana; Zhou, Xueyang; Xie, Cong; Thakur, Ayushi; Britton, Graham; Spindler, Matthew; Ngai, Louis; Tai, Siu Ling; Dasoveanu, Dragos Cristian; Nguyen, Albert; Faith, Jeremiah J.; Parkinson, John; Gommerman, Jennifer L.; Mortha, Arthur
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The impact of gestational diabetes on functional capacity of the infant gut microbiome is modest and transient
err2024-05-26
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errChieu, Ryan V.; Hamilton, Katharine; Ryan, Paul M.; Copeland, Julia; Wang, Pauline W.; Retnakaran, Ravi; Guttman, David S.; Parkinson, John; Hamilton, Jill K.
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Commensal protist Tritrichomonas musculus exhibits a dynamic life cycle that induces extensive remodeling of the gut microbiota
err2024-02-05
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errPopovic, Ana; Cao, Eric Y.; Han, Joanna; Nursimulu, Nirvana; Alves-Ferreira, Eliza V. C.; Burrows, Kyle; Kennard, Andrea; Alsmadi, Noor; Grigg, Michael E.; Mortha, Arthur; Parkinson, John
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MetaPro: a scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities
err2023-06-27
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errOAAI
errTaj, Billy; Adeolu, Mobolaji; Xiong, Xuejian; Ang, Jordan; Nursimulu, Nirvana; Parkinson, John
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Systematic profiling of the chicken gut microbiome reveals dietary supplementation with antibiotics alters expression of multiple microbial pathways with minimal impact on community structure
err2022-08-15
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errZou, Angela; Nadeau, Kerry; Xiong, Xuejian; Wang, Pauline W.; Copeland, Julia K.; Lee, Jee Yeon; St Pierre, James; Ty, Maxine; Taj, Billy; Brumell, John H.; Guttman, David S.; Sharif, Shayan; Korver, Doug; Parkinson, John
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Toxoplasma infection in male mice alters dopamine-sensitive behaviors and host gene expression patterns associated with neuropsychiatric disease
err2022-07-20
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errCromar, Graham L.; Epp, Jonathan R.; Popovic, Ana; Gu, Yusing; Ha, Violet; Walters, Brandon J.; Pierre, James St.; Xiong, Xuejian; Howland, John G.; Josselyn, Sheena A.; Frankland, Paul W.; Parkinson, John
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Effects of therapeutic levels of dietary antibiotics on the cecal microbiome composition of broiler chickens
err2022-06-01
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errOAAI
errKairmi, Seyed Hossien; Taha-Abdelaziz, Khaled; Yitbarek, Alexander; Sargolzaei, Mehdi; Spahany, Heidi; Astill, Jake; Shojadoost, Bahram; Alizadeh, Mohammadali; Kulkarni, Raveendra R.; Parkinson, John; Sharif, Shayan
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Performance of distinct microbial based solutions in a Campylobacter infection challenge model in poultry
err2022-01-03
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errTy, Maxine; Taha-Abdelaziz, Khaled; Demey, Vanessa; Castex, Mathieu; Sharif, Shayan; Parkinson, John
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Micronutrient supplements can promote disruptive protozoan and fungal communities in the developing infant gut
err2021-11-18
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errPopovic, Ana; Bourdon, Celine; Wang, Pauline W.; Guttman, David S.; Soofi, Sajid; Bhutta, Zulfiqar A.; Bandsma, Robert H. J.; Parkinson, John; Pell, Lisa G.
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E.coli Nissle increases transcription of flagella assembly and formate hydrogenlyase genes in response to colitis
err2021-11-09
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errDacquay, Louis C.; Tsang, Derek; Chan, Donny; Parkinson, John; Philpott, Dana J.; McMillen, David R.
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A new platform for high-throughput therapy testing on iPSC-derived lung progenitor cells from cystic fibrosis patients
err2021-11-01
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errJiang, Jia Xin; Wellhauser, Leigh; Laselva, Onofrio; Utkina, Irina; Bozoky, Zoltan; Gunawardena, Tarini; Ngan, Zoe; Xia, Sunny; Di Paola, Michelle; Eckford, Paul D. W.; Ratjen, Felix; Moraes, Theo J.; Parkinson, John; Wong, Amy P.; Bear, Christine E.
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Blindly Controlled Magnetically Actuated Capsule for Noninvasive Sampling of the Gastrointestinal Microbiome
err2021-10-01
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PREAI
errShokrollahi, Peyman; Lai, Yung P.; Rash-Ahmadi, Samrand; Stewart, Victoria; Mohammadigheisar, Mohsen; Huber, Lee-Anne; Matsuura, Naomi; Zavodni, Anna E. H.; Parkinson, John; Diller, Eric
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Modeling the metabolic interplay between a parasitic worm and its bacterial endosymbiont allows the identification of novel drug targets
err2020-08-11
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errCurran, David M.; Grote, Alexandra; Nursimulu, Nirvana; Geber, Adam; Voronin, Dennis; Jones, Drew R.; Ghedin, Elodie; Parkinson, John
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BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain (vol 10, pg 333, 2020)
err2020-08-01
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errPourhaghighi, Reza; Ash, Peter E. A.; Phanse, Sadhna; Goebels, Florian; Hu, Lucas Z. M.; Chen, Siwei; Zhang, Yingying; Wierbowski, Shayne D.; Boudeau, Samantha; Moutaoufik, Mohamed T.; Malty, Ramy H.; Malolepsza, Edyta; Tsafou, Kalliopi; Nathan, Aparna; Cromar, Graham; Guo, Hongbo; Al Abdullatif, Ali; Apicco, Daniel J.; Becker, Lindsay A.; Gitler, Aaron D.; Pulst, Stefan M.; Youssef, Ahmed; Hekman, Ryan; Havugimana, Pierre C.; White, Carl A.; Blum, Benjamin C.; Ratti, Antonia; Bryant, Camron D.; Parkinson, John; Lage, Kasper; Babu, Mohan; Yu, Haiyuan; Bader, Gary D.; Wolozin, Benjamin; Emili, Andrew
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A transcriptomic analysis of the phylum Nematoda (vol 36, pg 1259, 2004)
err2020-06-15
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errParkinson, John; Mitreva, Makedonka; Whitton, Claire; Thomson, Marian; Daub, Jennifer; Martin, John; Schmid, Ralf; Hall, Neil; Barrell, Bart; Waterston, Robert H.; McCarter, James P.; Blaxter, Mark L.
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