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J

Joel P. Arrais

universidade de coimbra

19H-index
129Paper Count
1.3KCitation Count
Published Papers 29
Publication Date
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A Novel Deep Learning Framework for Predicting Antimicrobial Peptide Activity Using ProtBert and Neural Networks
errPATTERN RECOGNITION AND IMAGE ANALYSIS, IBPRIA 2025, PT II
IF0
err2026-01-01
err0
PREAI
errAbbasi, Maryam; Vasconcelos, Veronica; Vicente, Edgar M. C. O. S.; Santos, Ana L. M.; Arrais, Joel P.
errShare
errSave
Convolutional Spiking Neural Networks with Molecular Fingerprints for Drug Discovery
errPROGRESS IN ARTIFICIAL INTELLIGENCE, EPIA 2025, PT I
IF0
err2026-01-01
err0
PREAI
errBosii, Dinu; Torres, Luis H. M.; Arrais, Joel P.; Ribeiro, Bernardete
errShare
errSave
Deep learning for small-molecule drug discovery: From molecular design to clinical translation
errJournal of Pharmaceutical Analysis
IF8.9
err2025-12-26
err0
errOAAI
errRita I. Oliveira; Tiago O. Pereira; Maryam Abbasi; Jorge A.R. Salvador; Joel P. Arrais
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errSave
Review of advanced algorithms and imaging techniques in food analysis: a path to the future
errTrends in Food Science & Technology
IF15.4
err2025-12-19
err0
PREAI
errCarlos Eduardo Marques Pratas; Fernando Ramos; Joel Arrais; Ana Sanches Silva
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errSave
Enhancing kinase-inhibitor activity and selectivity prediction through contrastive learning
errNature Communications
IF15.7
err2025-12-03
err0
errOAAI
errYanan Tian; Ruiqiang Lu; Xiaoqing Gong; Wei Zhao; Yuquan Li; Xiaorui Wang; Xinming Jia; Qin Li; Yuwei Yang; Henry H. Y. Tong; Joel P. Arrais; Xiaojun Yao; Huanxiang Liu
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errSave
Advancing mutagenicity predictions in drug discovery with an explainable few-shot deep learning framework
errDigital Discovery
IF5.6
err2025-11-18
err0
errOAAI
errLuis H. M. Torres; Sofia M. da Silva; Joel P. Arrais; Catarina Pimentel; Bernardete Ribeiro
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errSave
Rethinking transformers with convolution and graph embeddings for few-shot molecular property discovery
errPATTERN RECOGNITION
IF7.6
err2025-05-08
err0
PREAI
errTorres, Luis H. M.; Arrais, Joel P.; Ribeiro, Bernardete
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errSave
Predicting progression of mild cognitive impairment patients through four distinctive subgroups obtained by unsupervised learning algorithms
errJOURNAL OF ALZHEIMERS DISEASE
IF3.1
err2025-04-01
err0
PREAI
errSilva-Spinola, Anuschka; Baldeiras, Ines; Santana, Isabel; Arrais, Joel P.
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errSave
Combining graph neural networks and transformers for few-shot nuclear receptor binding activity prediction
errJOURNAL OF CHEMINFORMATICS
IF5.7
err2024-09-27
err0
errOAAI
errTorres, Luis H. M.; Arrais, Joel P.; Ribeiro, Bernardete
errShare
errSave
Enhancing schizophrenia phenotype prediction from genotype data through knowledge-driven deep neural network models
errGENOMICS
IF3
err2024-09-01
err0
errOAAI
errMartins, Daniel; Abbasi, Maryam; Egas, Conceicao; Arrais, Joel P.
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errSave
Predicting drug activity against cancer through genomic profiles and SMILES
errARTIFICIAL INTELLIGENCE IN MEDICINE
IF6.2
err2024-04-01
err3
errOAAI
errAbbasi, Maryam; Carvalho, Filipa G.; Ribeiro, Bernardete; Arrais, Joel P.
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errSave
Ensemble-imbalance-based classification for amyotrophic lateral sclerosis prognostic prediction: identifying short-survival patients at diagnosis
errBMC MEDICAL INFORMATICS AND DECISION MAKING
IF3.8
err2024-03-19
err1
errOAAI
errPapaiz, Fabiano; Dourado, Mario Emilio Teixeira; Valentim, Ricardo Alexsandro de Medeiros; Pinto, Rafael; de Morais, Antonio Higor Freire; Arrais, Joel Perdiz
errShare
errSave
Multi-scale cross-attention transformer via graph embeddings for few-shot molecular property prediction
errAPPLIED SOFT COMPUTING
IF6.6
err2024-03-01
err5
errOAAI
errTorres, Luis H. M.; Ribeiro, Bernardete; Arrais, Joel P.
errShare
errSave
TAG-DTA: Binding-region-guided strategy to predict drug-target affinity using transformers
errEXPERT SYSTEMS WITH APPLICATIONS
IF7.5
err2024-03-01
err4
errOAAI
errMonteiro, Nelson R. C.; Oliveira, Jose L.; Arrais, Joel P.
errShare
errSave
Enhancing reinforcement learning for de novo molecular design applying self-attention mechanisms
errBRIEFINGS IN BIOINFORMATICS
IF7.7
err2023-10-30
err1
PREAI
errPereira, Tiago O.; Abbasi, Maryam; Arrais, Joel P.
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errSave
Artificial intelligence for prediction of biological activities and generation of molecular hits using stereochemical information
errJOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN
IF3.1
err2023-10-17
err1
errOAAI
errPereira, Tiago O.; Abbasi, Maryam; Oliveira, Rita I.; Guedes, Romina A.; Salvador, Jorge A. R.; Arrais, Joel P.
errShare
errSave
FSM-DDTR: End-to-end feedback strategy for multi-objective De Novo drug design using transformers
errCOMPUTERS IN BIOLOGY AND MEDICINE
IF6.3
err2023-09-01
err6
errOAAI
errMonteiro, Nelson R. C.; Pereira, Tiago O.; Machado, Ana Catarina D.; Oliveira, Jose L.; Abbasi, Maryam; Arrais, Joel P.
errShare
errSave
Few-shot learning with transformers via graph embeddings for molecular property prediction
errEXPERT SYSTEMS WITH APPLICATIONS
IF7.5
err2023-09-01
err11
errOAAI
errTorres, Luis H. M.; Ribeiro, Bernardete; Arrais, Joel P.
errShare
errSave
Designing optimized drug candidates with Generative Adversarial Network (vol 14, 40, 2022)
errJOURNAL OF CHEMINFORMATICS
IF5.7
err2022-08-11
err0
errOAAI
errAbbasi, Maryam; Santos, Beatriz P.; Pereira, Tiago C.; Sofa, Raul; Monteiro, Nelson R. C.; Simoes, Carlos J. V.; Brito, Rui M. M.; Ribeiro, Bernardete; Oliveira, Jose L.; Arrais, Joel P.
errShare
errSave
DTITR: End-to-end drug-target binding affinity prediction with transformers
errCOMPUTERS IN BIOLOGY AND MEDICINE
IF6.3
err2022-08-01
err30
errOAAI
errMonteiro, Nelson R. C.; Oliveira, Jose L.; Arrais, Joel P.
errShare
errSave

Research Directions

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Co-authors
Cooperation Journals
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秦鹂 (Qin Li)
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姚小軍 cover
姚小軍 (Xiaojun Yao)
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A
A. Sanches‐Silva
H-index: 62 · Papers: 489
I
Isabel Santana
H-index: 61 · Papers: 460
M
Manuel A. S. Santos
H-index: 50 · Papers: 230
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