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Artur Yakimovich

helmholtz association

18H-index
111Paper Count
1.1KCitation Count
Published Papers 28
Publication Date
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Roadmap on deep learning for microscopy
errjournal of physics: photonics
IF0
err2026-01-29
err0
errOAAI
errGiovanni Volpe; Carolina Wählby; Lei Tian; Michael Hecht; Artur Yakimovich; Kristina Monakhova; Laura Waller; Ivo F Sbalzarini; Christopher A Metzler; Mingyang Xie; Kevin Zhang; Isaac C D Lenton; Halina Rubinsztein-Dunlop; Daniel Brunner; Bijie Bai; Aydogan Ozcan; Daniel Midtvedt; Hao Wang; Tongyu Li; Nataša Sladoje; Joakim Lindblad; Jason T Smith; Marien Ochoa; Margarida Barroso; Xavier Intes; Tong Qiu; Li-Yu Yu; Sixian You; Yongtao Liu; Maxim A Ziatdinov; Sergei V Kalinin; Arlo Sheridan; Uri Manor; Elias Nehme; Ofri Goldenberg; Yoav Shechtman; Henrik K Moberg; Christoph Langhammer; Barbora Špačková; Saga Helgadottir; Benjamin Midtvedt; Aykut Argun; Tobias Thalheim; Frank Cichos; Stefano Bo; Lars Hubatsch; Jesus Pineda; Carlo Manzo; Harshith Bachimanchi; Erik Selander; Antoni Homs-Corbera; Martin Fränzl; Kevin de Haan; Yair Rivenson; Zofia Korczak; Caroline Beck Adiels; Mite Mijalkov; Dániel Veréb; Yu-Wei Chang; Joana B Pereira; Damian Matuszewski; Gustaf Kylberg; Ida-Maria Sintorn; Juan C Caicedo; Beth A Cimini; Muyinatu A Lediju Bell; Bruno M Saraiva; Guillaume Jacquemet; Ricardo Henriques; Wei Ouyang; Trang Le; Estibaliz Gómez-de-Mariscal; Daniel Sage; Arrate Muñoz-Barrutia; Ebba Josefson Lindqvist; Johanna Bergman
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errSave
DeBCR: a sparsity-efficient framework for image enhancement through a deep-learning-based solution to inverse problems
errCommunications Engineering
IF0
err2026-01-12
err0
errOAAI
errLi, Rui; Yushkevich, Artsemi; Chu, Xiaofeng; Kudryashev, Mikhail; Yakimovich, Artur
errShare
errSave
Regularized Gradient Statistics Improve Generative Deep Learning Models of Super Resolution Microscopy
errSmall Methods
IF9.1
err2025-06-02
err0
errOAAI
errMeri Abgaryan; Xinning Cui; Nandu Gopan; Gabriel della Maggiora; Artur Yakimovich; Ivo F. Sbalzarini
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errSave
A Benchmark for Virus Infection Reporter Virtual Staining in Fluorescence and Brightfield Microscopy
errSCIENTIFIC DATA
IF6.9
err2025-05-28
err0
errOAAI
errWyrzykowska, Maria; della Maggiora, Gabriel; Deshpande, Nikita; Mokarian, Ashkan; Yakimovich, Artur
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errSave
Vaccinia virus subverts xenophagy through phosphorylation and nuclear targeting of p62
errJOURNAL OF CELL BIOLOGY
IF6.4
err2024-05-06
err0
errOAAI
errKrause, Melanie; Samolej, Jerzy; Yakimovich, Artur; Kriston-Vizi, Janos; Huttunen, Moona; Lara-Reyna, Samuel; Frickel, Eva-Maria; Mercer, Jason
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errSave
Bisbenzimide compounds inhibit the replication of prototype and pandemic potential poxviruses
errMICROBIOLOGY SPECTRUM
IF3.8
err2024-04-02
err4
errOAAI
errSamolej, Jerzy; Mendonca, Diogo Correa; Upfold, Nicole; Mcelwee, Marion; Landsberger, Mariann; Yakimovich, Artur; Patel, Arvind H.; Strang, Blair L.; Mercer, Jason
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errSave
Toward the novel AI tasks in infection biology
errMSPHERE
IF3.1
err2024-02-28
err0
errOAAI
errYakimovich, Artur
errShare
errSave
Using Social Media to Help Understand Patient-Reported Health Outcomes of Post-COVID-19 Condition: Natural Language Processing Approach (vol 25, e45767, 2023)
errJOURNAL OF MEDICAL INTERNET RESEARCH
IF6
err2023-12-08
err1
errOAAI
errDolatabadi, Elham; Moyano, Diana; Bales, Michael; Spasojevic, Sofija; Bhambhoria, Rohan; Bhatti, Junaid; Debnath, Shyamolima; Hoell, Nicholas; Li, Xin; Leng, Celine; Nanda, Sasha; Saab, Jad; Sahak, Esmat; Sie, Fanny; Uppal, Sara; Vadlamudi, Nirma Khatri; Vladimirova, Antoaneta; Yakimovich, Artur; Yang, Xiaoxue; Kocak, Sedef Akinli; Cheung, Angela M.
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errSave
A weak-labelling and deep learning approach for in-focus object segmentation in 3D widefield microscopy
errSCIENTIFIC REPORTS
IF3.9
err2023-07-28
err0
errOAAI
errLi, Rui; Kudryashev, Mikhail; Yakimovich, Artur
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errSave
Sequencing meets machine learning to fight emerging pathogens: A preview
errPATTERNS
IF7.4
err2022-02-01
err0
errOAAI
errYakimovich, Artur
errShare
errSave
Editorial: Machine Learning Methodologies to Study Molecular Interactions
errFRONTIERS IN MOLECULAR BIOSCIENCES
IF4
err2021-12-03
err1
errOAAI
errYakimovich, Artur; Ozgur, Arzucan; Dogan, Tunca; Ozkirimli, Elif
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errSave
Labels in a haystack: Approaches beyond supervised learning in biomedical applications
errPATTERNS
IF7.4
err2021-12-01
err9
errOAAI
errYakimovich, Artur; Beaugnon, Anael; Huang, Yi; Ozkirimli, Elif
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errSave
Vaccinia virus hijacks ESCRT-mediated multivesicular body formation for virus egress
errLIFE SCIENCE ALLIANCE
IF2.9
err2021-06-18
err17
errOAAI
errHuttunen, Moona; Samolej, Jerzy; Evans, Robert J.; Yakimovich, Artur; White, Ian J.; Kriston-Vizi, Janos; Martin-Serrano, Juan; Sundquist, Wesley, I; Frickel, Eva-Maria; Mercer, Jason
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errSave
Mimicry Embedding Facilitates Advanced Neural Network Training for Image-Based Pathogen Detection
errMSPHERE
IF3.1
err2020-10-28
err4
errOAAI
errYakimovich, Artur; Huttunen, Moona; Samolej, Jerzy; Clough, Barbara; Yoshida, Nagisa; Mostowy, Serge; Frickel, Eva-Maria; Mercer, Jason
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errSave
The FDA-Approved Drug Nelfinavir Inhibits Lytic Cell-Free but Not Cell-Associated Nonlytic Transmission of Human Adenovirus
errANTIMICROBIAL AGENTS AND CHEMOTHERAPY
IF4.5
err2020-08-20
err17
errOAAI
errGeorgi, Fanny; Andriasyan, Vardan; Witte, Robert; Murer, Luca; Hemmi, Silvio; Yu, Lisa; Grove, Melanie; Meili, Nicole; Kuttler, Fabien; Yakimovich, Artur; Turcatti, Gerardo; Greber, Urs F.
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errSave
The zebrafish as a novel model for the in vivo study of Toxoplasma gondii replication and interaction with macrophages
errDISEASE MODELS & MECHANISMS
IF3.3
err2020-07-20
err11
errOAAI
errYoshida, Nagisa; Domart, Marie-Charlotte; Peddie, Christopher J.; Yakimovich, Artur; Mazon-Moya, Maria J.; Hawkins, Thomas A.; Collinson, Lucy; Mercer, Jason; Frickel, Eva-Maria; Mostowy, Serge
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errSave
mSphere of Influence: the Rise of Artificial Intelligence in Infection Biology
errMSPHERE
IF3.1
err2019-06-26
err5
errOAAI
errYakimovich, Artur
errShare
errSave
Defining host-pathogen interactions employing an artificial intelligence workflow
errELIFE
IF0
err2019-02-12
err59
errOAAI
errFisch, Daniel; Yakimovich, Artur; Clough, Barbara; Wright, Joseph; Bunyan, Monique; Howell, Michael; Mercer, Jason; Frickel, Eva
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errSave
Label-Free Digital Holo-tomographic Microscopy Reveals Virus-Induced Cytopathic Effects in Live Cells
errMSPHERE
IF3.1
err2018-12-26
err20
errOAAI
errYakimovich, Artur; Witte, Robert; Andriasyan, Vardan; Georgi, Fanny; Greber, Urs F.
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errSave
Concepts in Light Microscopy of Viruses
errVIRUSES-BASEL
IF3.5
err2018-04-18
err40
errOAAI
errWitte, Robert; Andriasyan, Vardan; Georgi, Fanny; Yakimovich, Artur; Greber, Urs F.
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errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
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Pascale Cossart
H-index: 125 · Papers: 604
A
Ari Helenius
H-index: 123 · Papers: 315
S
Sergei V. Kalinin
H-index: 109 · Papers: 1.6K
M
Manfred Köpf
H-index: 104 · Papers: 324
C
Christian von Mering
H-index: 100 · Papers: 271
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